View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18313_high_7 (Length: 610)
Name: NF18313_high_7
Description: NF18313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18313_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 15 - 594
Target Start/End: Complemental strand, 32171307 - 32170728
Alignment:
| Q |
15 |
aagaagtgtggatctgttatgcttcgtatatacaattggatttatcaactataagctcggatctctgaaatgattttagctctacaattattcaggaagc |
114 |
Q |
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| T |
32171307 |
aagaagtgtggatctgttatgcttcgtatatacaattggatttatcaactataagcttggatctctgaaatgattttagctctacaattattcaggaagc |
32171208 |
T |
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| Q |
115 |
tcaaaaacgatggataaaatacaaaagaaaatgactcatcatgaagaaacttgtattgaaaagaaagaagggaacattatatcggagataagttacatgt |
214 |
Q |
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| T |
32171207 |
tcaaaaacgatggataaaatacaaaagaaaatgactcatcatgaagaaacttgtattgaaaagaaagaagggaacattatatcggagataagttacatgt |
32171108 |
T |
|
| Q |
215 |
agcaaatatctatctaaagttcctgtaatttcatcaattattccttttataacatcatgaatttcatctaaagttgaattagtagtaaagactaaattat |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32171107 |
agcaaatatctatctaaagttcctgtaatttcatcaattattccttttataacatcatgaatttcatctaaagttgaattagttgtaaagactaaattat |
32171008 |
T |
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| Q |
315 |
cattatatttcatatttatcaaatacaggtttgatagcacaacgaattcttgacaattataggccacttgatcaatagaaagaaaatagcttttcagata |
414 |
Q |
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| T |
32171007 |
cattatatttcatatttatcaaatacaggtttgatagcataacgaattcttgacgattataggccacttgatcaatagaaagaaaatagcttttcagata |
32170908 |
T |
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| Q |
415 |
agagactaatttacccagcagtcggcacatgttggagagtcgtgattgaagatcattccatcgcaaagctgctcaaacaacaaatacacaaaattcaatt |
514 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32170907 |
agagactaatttacccagcagtcggcacatgttggagggtcgtgattgaagatcattccatcgcaaagctgctcaaacaacaaatacacaaaattcaatt |
32170808 |
T |
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| Q |
515 |
atagatcaatttggcataaagctacgttaacgctataattccttacgaaaccaaattttgtgctttgagtttgaaagttc |
594 |
Q |
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| T |
32170807 |
atagatcaatttggcataaagctacgttaacgctataattccttacaaaaccaaattttgtgctttgagtttgaaagttc |
32170728 |
T |
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