View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18313_low_1 (Length: 1050)
Name: NF18313_low_1
Description: NF18313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18313_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 919; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 919; E-Value: 0
Query Start/End: Original strand, 16 - 1022
Target Start/End: Original strand, 55336455 - 55337457
Alignment:
| Q |
16 |
caccaaacagaaggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagctttgtcaagtgccaacactttctccaatg |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55336455 |
caccaaacagaaggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagctttgtcaagtgccaacactttctccaatg |
55336554 |
T |
|
| Q |
116 |
aagattccacatcttcctccgtaataagattaccaagattgattttggtttggatttgagtccatagttgtttgaacaatcttgtagcactgcgctgttc |
215 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
55336555 |
aagattccacatcttcctcagtaataagattaccaagattgattttggtttggatttgagtccatagttgtttgaacaatcttgtagcattgcgctgttc |
55336654 |
T |
|
| Q |
216 |
ctcagcgagctgcgaaggctgaatcttgttcatgataagcaacatacaagttgctgctgaaaacagaagagtggatgatagtttcagagccaacagttgt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55336655 |
ctcagcgagctgcgaaggctgaatcttgttcatgataagcaacataccagttgctgctgaaaacagaagagtggatgatagtttcagagccaacagttgt |
55336754 |
T |
|
| Q |
316 |
gcaccatcagcaccagttgcggctgcaataccagttaatgttgtagcagtgagtgtaatcatgttaatgttgtttagaagtaggttgttccaattttgac |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55336755 |
gcaccatcagcaccagttgcggctgcaatacaagttaatgttgtagcagtgagtgtaatcatgttaatgttgtttagaagtaggttgttccaattttgac |
55336854 |
T |
|
| Q |
416 |
gctgttcgcagatgtttttgtgcatttcaattctgtcagatacagaatctaagatagcatagagttgcacggtgttggagttattgattgtagaattgga |
515 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
55336855 |
gctgttcgccgatgtttttgtgcatttcaattctgtcagatacagaatctaagatagcatagagttgcacggtgttggagttattgattgaagaattgga |
55336954 |
T |
|
| Q |
516 |
taaatcatggtgtaaattatgtgtcctattgatgacannnnnnncaagcaataatgaaggaactgagtctttgaaggttaacccttcaaccagctttgca |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55336955 |
taaatcatggtgtaaattatgtgtcctattgatgacatttttttcaagcaataatgaaggaactgagtctttgaaggttaacccttcaaccagctttgca |
55337054 |
T |
|
| Q |
616 |
gtgggtatcctattcttaggaagtaaagaattgggtcttgggaaatggattgaggcattcacatttcctctttttgaagacaagaaagaaaaagaagaag |
715 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
55337055 |
gtgggtatcctattcttaggaagtaaagaattgggtcttgggaaatggattgaggcattcacattacctctttttgaagacaagaaagaaaaagaagaag |
55337154 |
T |
|
| Q |
716 |
ttgaggtgtgcatggaagccatgaaaatgaaatgattgtacgtatgttaattatgttttgctttgtgtttagtgttagtgaggaaaggtttatatatata |
815 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
55337155 |
ttgaggtgtgcatggaagccatgaaaatgaaatgattgtacgtatgttaattatgttttgatttgtgtttagtgttagtgaggaaaggtttatata---- |
55337250 |
T |
|
| Q |
816 |
ctatactattgtgacagggaggatgagtgcaacttgtaatgttatagttttattcaattttttaagac-aagagttatgggaggtattaaacaaataggt |
914 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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|
| T |
55337251 |
-tatactattgtgacagggaggatgagtgcaacttgtaatgttatagttttattcaattttttagtacaaagagttatgggaggtattaaacaaataggt |
55337349 |
T |
|
| Q |
915 |
tcttagatacctatggaccaaatgtaggaatatttgtatacacacaataaaataacatgtttttagtattaaaaaatgaagctaatgagttcatgtcatg |
1014 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55337350 |
tcttagatacctatggaccaaatgtaggaatatttgtatacacacaataaaataacatgtttttagtattaaaaaatgaagctaatgagttcatgtcatg |
55337449 |
T |
|
| Q |
1015 |
tgaaatta |
1022 |
Q |
| |
|
|||||||| |
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|
| T |
55337450 |
tgaaatta |
55337457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 16 - 484
Target Start/End: Original strand, 55331020 - 55331485
Alignment:
| Q |
16 |
caccaaacagaaggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagctttgtcaagtgccaacactttctccaatg |
115 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||| |||||||||||| | ||||| | |||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
55331020 |
caccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctccatga |
55331119 |
T |
|
| Q |
116 |
aagattccacatcttcctccgtaataagattaccaagattgattttggtttggatttgagtccatagttgtttgaacaatcttgtagcactgcgctgttc |
215 |
Q |
| |
|
|| | | |||||||| || || |||| |||||| | | || ||| |||||| | | || |||||||| ||||||||||| | | ||||| |
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|
| T |
55331120 |
aacacttcacatcttgttctgttt---gatttccaagagcaactgtgttttcgatttggcttcgaagatgtttgaataatcttgtagcgtttctttgttc |
55331216 |
T |
|
| Q |
216 |
ctcagcgagctgcgaaggctgaatcttgttcatgataagcaacatacaagttgctgctgaaaacagaagagtggatgatagtttcagagccaacagttgt |
315 |
Q |
| |
|
|| ||||| |||||||||||||| |||||||| ||||| | |||| || ||||| ||||| | ||| |||||||||||||| |||||||| ||| | |
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|
| T |
55331217 |
ttccgcgagttgcgaaggctgaattttgttcataataagaagtatacttgtagctgcagaaaataaaagtgtggatgatagtttaagagccaaaagtggg |
55331316 |
T |
|
| Q |
316 |
gcaccatcagcaccagttgcggctgcaataccagttaatgttgtagcagtgagtgtaatcatgttaatgttgtttagaagtaggttgttccaattttgac |
415 |
Q |
| |
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| ||| ||||||| |||| || ||| ||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| || | |
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|
| T |
55331317 |
gtgccaatagcaccacttgcagccacaacaccggttaatgttgtagcagtaagtgtgatcatgttgatgttgtttagaagtaggttgttccaattctgtc |
55331416 |
T |
|
| Q |
416 |
gctgttcgcagatgtttttgtgcatttcaattctgtcagatacagaatctaagatagcatagagttgca |
484 |
Q |
| |
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|||||| || || ||| ||||||||||| |||||||| |||||||||||||| || ||||||||||||| |
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|
| T |
55331417 |
gctgttggctgaggttgttgtgcatttcgattctgtcggatacagaatctaaaattgcatagagttgca |
55331485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 8395469 - 8395392
Alignment:
| Q |
35 |
attttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagctttgtcaagtgccaacactttctcca |
112 |
Q |
| |
|
|||||||||| | ||||||||||| |||||||| | ||||||||||| ||||||||||| ||||| ||||| |||| |
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|
| T |
8395469 |
attttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaactttttcca |
8395392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 8406103 - 8406180
Alignment:
| Q |
35 |
attttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagctttgtcaagtgccaacactttctcca |
112 |
Q |
| |
|
|||||||||| | ||||||||||| |||||||| | ||||||||||| ||||||||||| ||||| ||||| |||| |
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|
| T |
8406103 |
attttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaactttttcca |
8406180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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