View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18313_low_11 (Length: 461)
Name: NF18313_low_11
Description: NF18313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18313_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 17 - 456
Target Start/End: Original strand, 9213956 - 9214397
Alignment:
| Q |
17 |
aatttacattggcagatgaattaagttggagtacttgaaaataacatgcataatctcatgcacttacaacaataacttcatcttcttttctaaaatgtga |
116 |
Q |
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| T |
9213956 |
aatttacattagcagatgaattaagttggagtacttgaaaataacatacataatctcatgcacttacaacaataacttcatcttcttttctaaaatgtga |
9214055 |
T |
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| Q |
117 |
ggagacctctttaacaaaattgctgttctttgtcatccctgaatacatgagaaaataatttacattaacatcaaacactatatgaatagattagagaaaa |
216 |
Q |
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| T |
9214056 |
ggagacctctttaacaaaattgctgttctttgtcatccctgaatacatgagaaaataatttacattaacatcaaacactatatgaatagattagagaaaa |
9214155 |
T |
|
| Q |
217 |
ggacactaatgg-------attatcaatttgatctcttacaattacaacctattctatcaaacctcagtcgtttcgtttgattgatctaatggctaagag |
309 |
Q |
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| T |
9214156 |
ggacattaatggtcaatggattatcaatttgatctcttacaattacaacctattctatcaaacctcagtcgt-----ttgattgatctaatggctaagag |
9214250 |
T |
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| Q |
310 |
tattattatatctcttagacttatgacaatcaacaataatttaacatagtgtttgagaattgaattagaacctgatccaactttgtacatataaggtatg |
409 |
Q |
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| T |
9214251 |
tattattatatctcttagacttatgacaatcaacaataatttaacatagtgtttgagaattgaattagaacctgatccaactttgtacatataaggtatg |
9214350 |
T |
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| Q |
410 |
ttaattgcaccaggagcgtgtccagcattaaactcttctgtgctcct |
456 |
Q |
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| T |
9214351 |
ttaattgcaccaggagcgtgtccagcattaaactcttccgtggtcct |
9214397 |
T |
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