View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18313_low_12 (Length: 460)

Name: NF18313_low_12
Description: NF18313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18313_low_12
NF18313_low_12
[»] chr4 (20 HSPs)
chr4 (19-452)||(5101827-5102267)
chr4 (264-432)||(5106306-5106478)
chr4 (116-215)||(5106203-5106302)
chr4 (123-328)||(2467533-2467744)
chr4 (264-422)||(2491037-2491195)
chr4 (291-409)||(2621180-2621298)
chr4 (130-190)||(2525943-2526003)
chr4 (136-190)||(2519368-2519422)
chr4 (139-189)||(12126962-12127012)
chr4 (291-420)||(2519144-2519273)
chr4 (141-184)||(2547613-2547656)
chr4 (139-189)||(12124906-12124956)
chr4 (141-409)||(2477490-2477761)
chr4 (51-120)||(5106108-5106177)
chr4 (136-188)||(2367600-2367652)
chr4 (136-188)||(2625296-2625348)
chr4 (284-338)||(2486300-2486354)
chr4 (136-189)||(2373164-2373217)
chr4 (129-190)||(5035808-5035869)
chr4 (130-190)||(2536677-2536737)
[»] chr7 (1 HSPs)
chr7 (19-432)||(2576139-2576555)
[»] chr1 (1 HSPs)
chr1 (285-389)||(15837976-15838080)


Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 19 - 452
Target Start/End: Original strand, 5101827 - 5102267
Alignment:
Q  19 tgagcatggttttagaatccattta-----aagcttcgttgagtctagggttgtttgttttgttgtgtagcatat--tttcataggagtgagcgaaggat 111  Q
    |||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||| ||||||||||  |||||||||| ||||||||||||    
T  5101827 tgagcatggttttagaatccatttataataaagcttcgttgagtctagggttgtttgttttgttttgtagcatatattttcataggaatgagcgaaggat 5101926  T
Q  112 taacaatggcagccgctgcaacaggttcatatttaccggatgagttatgggagcgcatcttcaaattcctcaacgacgaagttaagaacatctacgatat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5101927 taacaatggcagccgctgcaacaggttcatatttaccggatgagttatgggagcgcatcttcaaattcctcaacgacgaagttaagaacatctacgatat 5102026  T
Q  212 ccgtgcagatgggatgctagcttataacctctccttcctctctcttcgagatagtttcaagtctctctctggcgtctcgaaacagtttttgtctatcact 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5102027 ccgtgcagatgggatgctagcttataacctctccttcctctctcttcgagatagtttcaagtctctctctggcgtctcgaaacagtttttgtctatcact 5102126  T
Q  312 aatcgtcttcgattctcggtcacaatcactgatcgaaccatccctttcatccctctccttttcgaaaggttccctaacgtcacaacactcaacatcaccc 411  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5102127 aatagtcttcgattctcggtcacaatcactgatcgaaccatccctttcattcctctccttttcgaaaggttccctaacgtcacatcactcaacatcaccc 5102226  T
Q  412 tctcttcccgagtcctcaacgtcctcaacacgcttcatatc 452  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  5102227 tctcttcccgagtcctcaacgtcctcaacacgcttcttatc 5102267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 264 - 432
Target Start/End: Original strand, 5106306 - 5106478
Alignment:
Q  264 agtttcaagtctctctctggcgtctcgaaacagtttttgtctatcactaatcgtcttcgattctcggtcacaatcactgatcgaaccatccctttcatcc 363  Q
    ||||||||||||||||||| |||||| |||||||||||||| ||||| || |||| |||||||||||||||||||||| ||| ||||||||||||||| |    
T  5106306 agtttcaagtctctctctgccgtctcaaaacagtttttgtccatcaccaaccgtcctcgattctcggtcacaatcactaatcaaaccatccctttcattc 5106405  T
Q  364 ctctccttttcgaaaggttccctaacgtcaca----acactcaacatcaccctctcttcccgagtcctcaacg 432  Q
     || ||| ||| ||||||||||| ||||||||     ||||||||||||| ||||| ||| ||| ||||||||    
T  5106406 atcgcctcttcaaaaggttcccttacgtcacatcactcactcaacatcactctctcctccggagacctcaacg 5106478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 5106203 - 5106302
Alignment:
Q  116 aatggcagccgctgcaacaggttcatatttaccggatgagttatgggagcgcatcttcaaattcctcaacgacgaagttaagaacatctacgatatccgt 215  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||  |||||||||| ||||||||||||    
T  5106203 aatggcagccgatgcaacaggttcatatttaccggatgagttatgggagggcatcttcaaattcctcaccaacgactttaagaacatatacgatatccgt 5106302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 123 - 328
Target Start/End: Complemental strand, 2467744 - 2467533
Alignment:
Q  123 gccgctgcaacaggttcatatttaccggatgagttatgggagcgcatcttcaaattcctcaacgacgaagttaagaaca------tctacgatatccgtg 216  Q
    ||||| |||||| |||||||||||||  | |||||||||||||||||||||||||||||||||||| | |   | ||||      || || ||||   ||    
T  2467744 gccgcggcaacatgttcatatttaccaaaggagttatgggagcgcatcttcaaattcctcaacgacaacggcgacaacaacatgttcaacaatattgatg 2467645  T
Q  217 cagatgggatgctagcttataacctctccttcctctctcttcgagatagtttcaagtctctctctggcgtctcgaaacagtttttgtctatcactaatcg 316  Q
     | ||||||||||||||| |||||||||     ||||||| || || ||||||||||||||||| | |||||| |||||||||||||| || || ||  |    
T  2467644 aatatgggatgctagcttctaacctctctgctgtctctctccgtgacagtttcaagtctctctccgtcgtctcaaaacagtttttgtccattaccaacag 2467545  T
Q  317 tcttcgattctc 328  Q
    ||||||||||||    
T  2467544 tcttcgattctc 2467533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 264 - 422
Target Start/End: Complemental strand, 2491195 - 2491037
Alignment:
Q  264 agtttcaagtctctctctggcgtctcgaaacagtttttgtctatcactaatcgtcttcgattctcggtcacaatcactgatcgaaccatccctttcatcc 363  Q
    ||||||| |||||||||   |||||| ||||||||| |||| ||||| || ||||| ||||| |||||||||||| | |||  ||| ||||||||| |      
T  2491195 agtttcaggtctctctcactcgtctcaaaacagtttctgtccatcacaaaccgtctccgattttcggtcacaatctccgatgcaacaatccctttcctta 2491096  T
Q  364 ctctccttttcgaaaggttccctaacgtcacaacactcaacatcaccctctcttcccga 422  Q
     ||  || || ||||||||||||||| | ||| || |||| ||||||||||||||||||    
T  2491095 atcgtctctttgaaaggttccctaacattacatcaatcaatatcaccctctcttcccga 2491037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 291 - 409
Target Start/End: Original strand, 2621180 - 2621298
Alignment:
Q  291 aaacagtttttgtctatcactaatcgtcttcgattctcggtcacaatcactgatcgaaccatccctttcatccctctccttttcgaaaggttccctaacg 390  Q
    |||||||||||||| ||||| || ||||| || |||||  |||||||| | |||  ||||||||||||||| |||| ||| ||||| |||||||||||      
T  2621180 aaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccctaata 2621279  T
Q  391 tcacaacactcaacatcac 409  Q
    ||||| | |||||||||||    
T  2621280 tcacatccctcaacatcac 2621298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 2526003 - 2525943
Alignment:
Q  130 caacaggttcatatttaccggatgagttatgggagcgcatcttcaaattcctcaacgacga 190  Q
    ||||| ||||||||||||| || ||||||||||| | ||||||||||||||||||||||||    
T  2526003 caacacgttcatatttaccagaggagttatgggaacacatcttcaaattcctcaacgacga 2525943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 2519422 - 2519368
Alignment:
Q  136 gttcatatttaccggatgagttatgggagcgcatcttcaaattcctcaacgacga 190  Q
    |||||||||||||||| |||||||||||||||||  |||| ||||||||||||||    
T  2519422 gttcatatttaccggaggagttatgggagcgcattgtcaagttcctcaacgacga 2519368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 12127012 - 12126962
Alignment:
Q  139 catatttaccggatgagttatgggagcgcatcttcaaattcctcaacgacg 189  Q
    |||||||||| |||||||||||||||  |||||||||||||||||||||||    
T  12127012 catatttacctgatgagttatgggagatcatcttcaaattcctcaacgacg 12126962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 420
Target Start/End: Complemental strand, 2519273 - 2519144
Alignment:
Q  291 aaacagtttttgtctatcactaatcgtcttcgattctcggtcacaatcactgatcgaaccatccctttcatccctctccttttcgaaaggttccctaacg 390  Q
    ||||||||| |||| ||||| || ||| |||||| ||| ||||||||| | |||| ||| ||||||||| | | ||  || || || |||||||| ||||    
T  2519273 aaacagtttctgtccatcaccaaccgttttcgatcctcagtcacaatctcagatcaaacaatccctttccttcatcgtctctttgataggttccccaacg 2519174  T
Q  391 tcacaacactcaacatcaccctctcttccc 420  Q
    | ||| ||||||||||||| ||||||||||    
T  2519173 ttacatcactcaacatcactctctcttccc 2519144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 2547656 - 2547613
Alignment:
Q  141 tatttaccggatgagttatgggagcgcatcttcaaattcctcaa 184  Q
    |||||||| |||||||||||||||| ||||||||||||||||||    
T  2547656 tatttaccagatgagttatgggagcacatcttcaaattcctcaa 2547613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 12124956 - 12124906
Alignment:
Q  139 catatttaccggatgagttatgggagcgcatcttcaaattcctcaacgacg 189  Q
    |||||||||| |||||| ||||||||  |||||||||||||||||||||||    
T  12124956 catatttaccagatgagatatgggagatcatcttcaaattcctcaacgacg 12124906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 141 - 409
Target Start/End: Complemental strand, 2477761 - 2477490
Alignment:
Q  141 tatttaccggatgagttatgggagcgcatcttcaaattcctcaacgacgaagttaagaacatcta---cgatatccgtgcagatgggatgctagcttata 237  Q
    |||||||| || ||||| |||||| ||||||||||||||||||||||||  |  || ||| ||||   | ||||   || | |||||||||||| || ||    
T  2477761 tatttaccagaggagttgtgggagggcatcttcaaattcctcaacgacggcgacaacaacttctacagcaatatggatgaatatgggatgctagattcta 2477662  T
Q  238 acctctccttcctctctcttcgagatagtttcaagtctctctctggcgtctcgaaacagtttttgtctatcactaatcgtcttcgattctcggtcacaat 337  Q
    |||| |||    ||||||| ||  | ||||||||||||||||| |  ||||| ||| ||||| |||| || || ||  ||||||||||||| || |||||    
T  2477661 acctttccgctatctctctccgtaacagtttcaagtctctctcggttgtctcaaaagagtttctgtccataaccaacagtcttcgattctctgtgacaat 2477562  T
Q  338 cactgatcgaaccatccctttcatccctctccttttcgaaaggttccctaacgtcacaacactcaacatcac 409  Q
      | |||| ||||||||||| | | | ||  || ||  |||||||||||||||||||| | || ||||||||    
T  2477561 ttccgatcaaaccatcccttcccttcatcctctctttcaaaggttccctaacgtcacatccctaaacatcac 2477490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 5106108 - 5106177
Alignment:
Q  51 gttgagtctagggttgtttgttttgttgtgtagcatattttcataggagtgagcgaaggattaacaatgg 120  Q
    ||||||| ||||||| ||  |||||| ||| ||||| |||||||| ||||||||||| ||||||||||||    
T  5106108 gttgagtttagggtttttgtttttgtcgtggagcatgttttcatacgagtgagcgaacgattaacaatgg 5106177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 2367600 - 2367652
Alignment:
Q  136 gttcatatttaccggatgagttatgggagcgcatcttcaaattcctcaacgac 188  Q
    ||||||||||| | |||||||||||||||  |||||||||||| |||||||||    
T  2367600 gttcatatttaacagatgagttatgggagatcatcttcaaatttctcaacgac 2367652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 2625296 - 2625348
Alignment:
Q  136 gttcatatttaccggatgagttatgggagcgcatcttcaaattcctcaacgac 188  Q
    ||||| ||||||| || ||||||||||| | ||||||||||||||||||||||    
T  2625296 gttcagatttaccagaggagttatgggaacacatcttcaaattcctcaacgac 2625348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 338
Target Start/End: Complemental strand, 2486354 - 2486300
Alignment:
Q  284 cgtctcgaaacagtttttgtctatcactaatcgtcttcgattctcggtcacaatc 338  Q
    |||||| ||||||||| |||| ||||| || ||||| ||||||||||||||||||    
T  2486354 cgtctcaaaacagtttctgtccatcaccaaccgtctccgattctcggtcacaatc 2486300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 2373164 - 2373217
Alignment:
Q  136 gttcatatttaccggatgagttatgggagcgcatcttcaaattcctcaacgacg 189  Q
    ||||||||||| | ||||| |||||||||  |||||||||||| ||||||||||    
T  2373164 gttcatatttaacagatgaattatgggagatcatcttcaaatttctcaacgacg 2373217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 5035869 - 5035808
Alignment:
Q  129 gcaacaggttcatatttaccggatgagttatgggagcgcatcttcaaattcctcaacgacga 190  Q
    |||||| ||||| ||||||| || || ||||||||   ||||||||||||||||||||||||    
T  5035869 gcaacacgttcaaatttaccagaggatttatgggaaaacatcttcaaattcctcaacgacga 5035808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 2536737 - 2536677
Alignment:
Q  130 caacaggttcatatttaccggatgagttatgggagcgcatcttcaaattcctcaacgacga 190  Q
    ||||| ||||||||||||| || |||||||||||   |||||||||||| |||||| ||||    
T  2536737 caacacgttcatatttaccagaggagttatgggaatacatcttcaaatttctcaaccacga 2536677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 432
Target Start/End: Original strand, 2576139 - 2576555
Alignment:
Q  19 tgagcatggttttagaatccattta--aagcttcgttgagtctagggttgtttgttttgttgtgtagcatattttcataggagtgagcgaaggattaaca 116  Q
    |||||| | |||||||||| |||||  |||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||| |     
T  2576139 tgagcacgattttagaatcgatttataaagctttgttgagtctagggttgttgtttttgttgtgtagcatattttcataggagtgagcgaacgattatcc 2576238  T
Q  117 atggcagccgctgcaacaggttcatatttaccggatgagttatgggagcgcatcttcaaattcctcaacgacgaagttaagaacatctacgatatccgtg 216  Q
    |||||||  |||||||||| |||||||||||  ||||||||||||| || |||||||| ||||||||||||||  |||||||||||||| ||||| | ||    
T  2576239 atggcagtggctgcaacagtttcatatttactagatgagttatgggggcacatcttcatattcctcaacgacgccgttaagaacatctatgatattcatg 2576338  T
Q  217 cagatgggatgctagcttataacctctccttc--ctctctcttcgagatagtttcaagtctctctctggcgtctcgaaacagtttttgtctatcactaat 314  Q
    || |||||||| ||||||||||||||||||||  |||||||||| |||||||||||||| |||||  | | ||| |||||||||||| || ||||| |||    
T  2576339 caaatgggatgttagcttataacctctccttcctctctctcttcaagatagtttcaagtatctcttcgtcatcttgaaacagtttttatccatcaccaat 2576438  T
Q  315 cgtcttcgattctcggtcacaatcactgatcgaaccatccctttcatccctctccttttcgaaaggttccctaacgtcacaacactcaacatcaccctct 414  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||   || ||| ||||||||| |||||||||||| | ||||||||| ||| ||||    
T  2576439 cgtcttcgattctcggtcacaatcaccgattgaaccatccctttcatttgtcgcctcttcgaaaggatccctaacgtca-atcactcaacaacactctct 2576537  T
Q  415 cttcccgagtcctcaacg 432  Q
      ||||||||||||||||    
T  2576538 actcccgagtcctcaacg 2576555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 389
Target Start/End: Original strand, 15837976 - 15838080
Alignment:
Q  285 gtctcgaaacagtttttgtctatcactaatcgtcttcgattctcggtcacaatcactgatcgaaccatccctttcatccctctccttttcgaaaggttcc 384  Q
    ||||| ||||||||| | || ||||| || ||||| ||||||||  ||| |||||  |||| ||| ||||||||||| |||  ||| ||| |||||||||    
T  15837976 gtctccaaacagtttctctccatcaccaaccgtctccgattctccctcaaaatcatagatcaaacaatccctttcattcctaacctcttccaaaggttcc 15838075  T
Q  385 ctaac 389  Q
    |||||    
T  15838076 ctaac 15838080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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