View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18313_low_13 (Length: 399)
Name: NF18313_low_13
Description: NF18313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18313_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 3380304 - 3380696
Alignment:
| Q |
1 |
ctacttctctattctcctatgctagaagagatgattgtgaagcatgttgtagacgtccagccaaagttgatgacataactaattcggttcaagagagcgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
3380304 |
ctacttctctattctcctatgctagaaaagatgattgtgaagcatgttgtagacgtccagccaaagttgatgacagaactaattcgcttcaagagagcgt |
3380403 |
T |
|
| Q |
101 |
cgggagaagctgaagttgtttaccttaaaaaagactcttcatgatgttttttattctcctcaaataatgttatgcattatgatttctaaggttatcatgg |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3380404 |
cgggagaagctgaagttatttaccttaaaaaagactcttcatgatgttttttattctcctcaaataatgttatgcattatgatttctaaggttatcatgg |
3380503 |
T |
|
| Q |
201 |
ctaaagcaa-----ttaataaagtagcagattaagttatttccaattgcatgttcacttgcagcaacaacaggtctcttttccttgtgttcatgtgtcct |
295 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3380504 |
ctaaagcaaactttttaataaagtagcagattatgttatttccaattgcatgttcacttgcagcagcaacaggtctcttttccttgtgttcatgtgtcct |
3380603 |
T |
|
| Q |
296 |
taatcactgtttcttatacattttgtccatgtttttgtttccagtttcctttgactttaatttatcatcacatattgtatctactttgatttt |
388 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3380604 |
taatcactgtttcttatacattttgtccatgtttttgtttccagtttcctttgactttaatttatcatcacaaattgtatctactttgatttt |
3380696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 3374178 - 3374311
Alignment:
| Q |
1 |
ctacttctctattctcctatgctagaagagatgattgtgaagcatgttgtagacgtccagccaaagttgatgacataactaattcggttcaagagagcgt |
100 |
Q |
| |
|
||||||| ||||||||| |||||||| ||||||||||||||||||||||| ||||||| || ||||||| ||| ||||| |||||||||||||||||| |
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| T |
3374178 |
ctacttcgatattctcctgtgctagaaaagatgattgtgaagcatgttgtaaacgtccaaccggagttgataacagaactacttcggttcaagagagcgt |
3374277 |
T |
|
| Q |
101 |
cgggagaagctgaagttgtttaccttaaaaaaga |
134 |
Q |
| |
|
||| |||||||||||| ||||||| ||||||| |
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|
| T |
3374278 |
cggatgaagctgaagttatttacctagaaaaaga |
3374311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 3366472 - 3366603
Alignment:
| Q |
1 |
ctacttctctattctcctatgctagaagagatgattgtgaagcatgttgtagacgtccagccaaagttgatgacataactaattcggttcaagagagcgt |
100 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||| ||||||||| | ||||| || |||| || || |||||||||||||||||| ||| | |
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|
| T |
3366472 |
ctacttcgctattctcctatgctagacaagatgattgtgaaacatgttgtaaaagtccaaccggagttaataaccgaactaattcggttcaagaaagcat |
3366571 |
T |
|
| Q |
101 |
cgggagaagctgaagttgtttaccttaaaaaa |
132 |
Q |
| |
|
| ||||||||||||||| |||||||| ||||| |
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|
| T |
3366572 |
ccggagaagctgaagttatttaccttgaaaaa |
3366603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 4333608 - 4333492
Alignment:
| Q |
1 |
ctacttctctattctcctatgctagaagagatgattgtgaagcatgttgtagacgtccagccaaagttgatgacataactaattcggttcaagagagcgt |
100 |
Q |
| |
|
|||||||| ||||||| |||||||| ||||||||||||||| ||||| | |||| || ||||||||| | ||||||||||||||| ||||| | |
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| T |
4333608 |
ctacttctatattctctggtgctagaaaagatgattgtgaagcctgttgcaaacgttataccggagttgatgaaagcactaattcggttcaaaagagcat |
4333509 |
T |
|
| Q |
101 |
cgggagaagctgaagtt |
117 |
Q |
| |
|
||||||||| ||||||| |
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|
| T |
4333508 |
cgggagaagttgaagtt |
4333492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 2021092 - 2021247
Alignment:
| Q |
1 |
ctacttctctattctcctatgctagaagagatgattgtgaagcatgttgtagacgtccagccaaagttgatgacataactaattcggttcaagagagcgt |
100 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||| ||||||| || | | ||||| | ||||||||| || |||| | || ||||||||||| | |
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|
| T |
2021092 |
ctacttctctattcgcctatgctagaaaagatggaagtgaagcctgatttgaacgtcggatctaagttgatgtcagaactgctgcgattcaagagagcct |
2021191 |
T |
|
| Q |
101 |
cgggagaagctgaagttgtttaccttaaaaaagactcttcatgatgttttttattc |
156 |
Q |
| |
|
| | | |||||||||||||||||||| ||| |||||||||||||||||||||| |
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|
| T |
2021192 |
ccgcacaagctgaagttgtttaccttggggaagtctcttcatgatgttttttattc |
2021247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 20936201 - 20936317
Alignment:
| Q |
1 |
ctacttctctattctcctatgctagaagagatgattgtgaagcatgttgtagacgtccagccaaagttgatgacataactaattcggttcaagagagcgt |
100 |
Q |
| |
|
|||||||| ||||||||| |||||||| |||||| |||||||| ||||| | || || || ||||||||| | ||||||||||||||| ||||||| |
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|
| T |
20936201 |
ctacttctatattctcctgtgctagaaaagatgactgtgaagcctgttgaaaacttcataccggagttgatgagaggactaattcggttcaaaagagcgt |
20936300 |
T |
|
| Q |
101 |
cgggagaagctgaagtt |
117 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
20936301 |
cgggagaagctgaagtt |
20936317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 20924591 - 20924713
Alignment:
| Q |
1 |
ctacttctctattctcctatgctagaagagatgattgtgaagcatgttgtagacgtccagccaaagttgatgacataactaattcggttcaagagagcgt |
100 |
Q |
| |
|
|||||||||||||| ||| |||| || ||||||||||| ||| ||||| | ||||| | || ||||||| ||| ||||||| ||||||| |||||||| |
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|
| T |
20924591 |
ctacttctctattcacctgtgctcaaaaagatgattgtggagcctgttgaaaacgtcaaaccggagttgataacagaactaatccggttcaggagagcgt |
20924690 |
T |
|
| Q |
101 |
cgggagaagctgaagttgtttac |
123 |
Q |
| |
|
| | | ||||||||||| ||||| |
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|
| T |
20924691 |
ccgaacaagctgaagttatttac |
20924713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 78 - 117
Target Start/End: Original strand, 20954519 - 20954558
Alignment:
| Q |
78 |
actaattcggttcaagagagcgtcgggagaagctgaagtt |
117 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
20954519 |
actaattcggttcaaaagagcgtcaggagaagctgaagtt |
20954558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 21238981 - 21239141
Alignment:
| Q |
1 |
ctacttctctattctcctatgctagaagagatgattgtgaagcatgttgtagacgtccagccaaagttgatgacataactaattcggttcaagagagcgt |
100 |
Q |
| |
|
||||||||| ||||||||||| ||||| |||||| |||||||| | ||| | | || ||| | ||| | ||| |||| ||| |||||||||| || | |
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|
| T |
21238981 |
ctacttctcaattctcctatgttagaaaagatgactgtgaagcctcttggaaatgttagaccagaattggtcacagaacttattaggttcaagagtgcat |
21239080 |
T |
|
| Q |
101 |
cgggagaagctgaagttgtttaccttaaaaaagactcttcatgatgttttttattctcctc |
161 |
Q |
| |
|
||||||||||||||||| |||||| | |||||||||||| ||| ||||||| ||||| |
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|
| T |
21239081 |
cgggagaagctgaagttatttaccatgtggaagactcttcataatgaattttattatcctc |
21239141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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