View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18313_low_15 (Length: 381)
Name: NF18313_low_15
Description: NF18313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18313_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 16 - 339
Target Start/End: Original strand, 6539220 - 6539545
Alignment:
| Q |
16 |
tcatgatccaaatattaacaaggagaaaaactaacaattagtagtaacatttttcattnnnnnnnnnncttaattgggcaatgaaatgtgagtaaaatta |
115 |
Q |
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| T |
6539220 |
tcatgatccaaatattaacaaggagaaaaactaacaattagtagtaacatttttcattaaaaaaaaaacttaattgggcaatgaaatgtgagtaaaatta |
6539319 |
T |
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| Q |
116 |
tggnnnnnnnnnn--aggaatggttcatatttgatgctgaagtcggcaatgaaaatgtgagtaaaattattatggttcgtatttggtgctgaactgagtg |
213 |
Q |
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| T |
6539320 |
tggtttttttttttaaggaatggttcatatttgatgctgaagtcggcaatgaaaatgtgagtaaaattattatggttcgtatttggtgctgaactgagtg |
6539419 |
T |
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| Q |
214 |
ctccaaatgctactgtccttataatcaagtttttcatgattgctgacaaagtggcccattgatnnnnnnnnnnnnnnngaattattgtaacaatgatgga |
313 |
Q |
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| T |
6539420 |
ctccaaatgctactgtccttataatcaagtttttcatgattgctgacaaagtggcccattgataaaaaaaaataaaaagaattattgtaacaatgatgga |
6539519 |
T |
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| Q |
314 |
gtgagtattaacaatgcttctgtctc |
339 |
Q |
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| T |
6539520 |
gtgagtattaacaatgtttctgtctc |
6539545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 330 - 373
Target Start/End: Original strand, 6539727 - 6539770
Alignment:
| Q |
330 |
cttctgtctccgaccacaaaaaagtcgaaacaaatatgatgatg |
373 |
Q |
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| T |
6539727 |
cttctgtctccgaccacaaaaaagtcgaaacaaatatgatgatg |
6539770 |
T |
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