View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18313_low_17 (Length: 366)
Name: NF18313_low_17
Description: NF18313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18313_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 5 - 355
Target Start/End: Original strand, 29847954 - 29848303
Alignment:
| Q |
5 |
tcaaaatcattgcttgactagtaaatatctccatggaaggttgatctcaactaattgaaaacatgagcgaagtgagtgtcttagaagcatacgactcttc |
104 |
Q |
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| T |
29847954 |
tcaaaatcattgcttgagtagtaaatatccccatggaatgttgatctcaactagttgaaaacatgagcggagtgagtgtcttagaagcatacgactcttc |
29848053 |
T |
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| Q |
105 |
gtccagtatttccaactagttcagatcaaccttgcatagagagagcatcattccaatattttaaggaggaaatttgtagagacaaaagcatgcgatggtt |
204 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29848054 |
gtccagtatttccaactagttcaaatcaaccttgcatagagagagtatcattccaatattttaaggaggaaatttgtagagacaaaagcatgcgatggtt |
29848153 |
T |
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| Q |
205 |
tttaaaaatgcaaaacttgatatattttagggcacaaaaaatatattaatttagaccttaatatttttatagaaaaagtgttagtaagtaggtgattatg |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29848154 |
tttaaaaatgcaaaacttgatatattttagggcacaaaaaatatattaatttagaccttaatatttttatag-aaaagtgttagtaagtaggtgattatg |
29848252 |
T |
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| Q |
305 |
tctgtttttagaatttaaatctcccgataaaaaccccttcaacattgttca |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29848253 |
tctgtttttagaatttaaatctcccgataaaaaccccttcaacattgttca |
29848303 |
T |
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