View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18313_low_19 (Length: 356)
Name: NF18313_low_19
Description: NF18313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18313_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 22 - 347
Target Start/End: Complemental strand, 5744381 - 5744056
Alignment:
| Q |
22 |
aagggtaaagattggggagacgaggttaagggaaaagaatgagaaaaacataacaaaaatcatttgtttcattgtcattttcaatagataataaaacact |
121 |
Q |
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| T |
5744381 |
aagggtaaagattggggagaggaggttaagggaaaagaatgagaaaaacataacaaaaatcatttgtttcattgtcattttcaatagataataaaacact |
5744282 |
T |
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| Q |
122 |
agaaggaaaaattggaaagatgagagtatgtatcaatatataaactatttctctcttgctctacttatagaagagatcttcaaaggatggtaacataagg |
221 |
Q |
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| T |
5744281 |
agaaggaaaaattggaaagatgagagtatgtatcaatatataaactatttctctcttgctctacttatagaagagatcttcaaaggatggtaacataagg |
5744182 |
T |
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| Q |
222 |
cacatgaaatttagtttgtatcatgtgaggttcatgcatacacatatgtatgcgtaagtgttgcatgnnnnnnnnagcacaaaatagtaaaattctcgtg |
321 |
Q |
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| T |
5744181 |
cacatgaaatttagtttgtatcatgtgaggttcatgcatacacatatgtatgcgtaagtgttgcatgttttttttagcacaaaatagtaaaattctcgtg |
5744082 |
T |
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| Q |
322 |
cattcgcatattgaggcgagaataat |
347 |
Q |
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| T |
5744081 |
cattcgcatattgaggcgagaataat |
5744056 |
T |
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