View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18313_low_20 (Length: 353)
Name: NF18313_low_20
Description: NF18313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18313_low_20 |
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| [»] scaffold0188 (1 HSPs) |
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Alignment Details
Target: scaffold0188 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 7 - 337
Target Start/End: Original strand, 8015 - 8350
Alignment:
| Q |
7 |
ctgagatgaatattccacactatatgccaattcaattaatt----gttcaaatcatattaattaggataaataataactgcaaaagatttcaataaagtg |
102 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8015 |
ctgaaatgaatattccacactatatgccaattcaattaattaattgttcaaatcatattaattaggataaataataactgcacaagatttcaataaagtg |
8114 |
T |
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| Q |
103 |
tgacgttgagatatatactcattagggtatttgagttttgagaagnnnnnnnnnnnnnn-tgcgtccgtttcaaagattatcattgtctagttttttatt |
201 |
Q |
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| T |
8115 |
tgacgttgagatatatactcattagggtctttgagttttgagaagaaaaaaaataaaaaatgcgtccgtttcaaagattatcattttctagttttttatt |
8214 |
T |
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| Q |
202 |
attatcactatgtttggttttgaatttggtgtttgtgtgtaatggaggttcgacaagtatttttgttaggaaggttgagaagagcattgatatgccactt |
301 |
Q |
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| T |
8215 |
attatcactaggtttggttttgaatttggtgtttgtgtgtaatggaagttccacaagtatttttgttaggaaggttgagaagagcattgatatgccactt |
8314 |
T |
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| Q |
302 |
gatagtgatgtttttagggttcctcctggttataat |
337 |
Q |
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| T |
8315 |
gatagcgatgtttttagggttccacctggttataat |
8350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 196 - 337
Target Start/End: Original strand, 13636537 - 13636678
Alignment:
| Q |
196 |
tttattattatcactatgtttggttttgaatttggtgtttgtgtgtaatggaggttcgacaagtatttttgttaggaaggttgagaagagcattgatatg |
295 |
Q |
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| T |
13636537 |
tttattattagctttatgtttggttttgaatttggtgtttgtgtgtaatggaggcagaactagtacttttgttaggaaagttgagaagaccattgatatg |
13636636 |
T |
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| Q |
296 |
ccacttgatagtgatgtttttagggttcctcctggttataat |
337 |
Q |
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| T |
13636637 |
ccacttgatagtgatgtttttgatgttccttctggttataat |
13636678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 337
Target Start/End: Complemental strand, 50981767 - 50981630
Alignment:
| Q |
200 |
ttattatcactatgtttggttttgaatttggtgtttgtgtgtaatggaggttcgacaagtatttttgttaggaaggttgagaagagcattgatatgccac |
299 |
Q |
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| T |
50981767 |
ttattaccactagctttagttttgaatttagtgtctgtgtgtaatggaggcacaaccagtgcttttgttaggaatgttcagaaaggcgttaatatgtcac |
50981668 |
T |
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| Q |
300 |
ttgatagtgatgtttttagggttcctcctggttataat |
337 |
Q |
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| T |
50981667 |
ttgatagtgatgtttttgctgttccttctggttataat |
50981630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 50965603 - 50965531
Alignment:
| Q |
177 |
gattatcattgtctagttttttattattatcactatgtttggttttgaatttggtgtttgtgtgtaatggagg |
249 |
Q |
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| T |
50965603 |
gattatcatttcctaattttttattaccactactagctttggttttgaatttggtgtttgtgtgcaatggagg |
50965531 |
T |
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