View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18313_low_25 (Length: 269)
Name: NF18313_low_25
Description: NF18313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18313_low_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 37782772 - 37783022
Alignment:
| Q |
1 |
atgttatggtccattaactttacatgactcaggctaaattgaatgaagaatttccagaacacaattcatgctcagcattggtgtgcacaatggcagcgat |
100 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37782772 |
atgttatggtccattaagtttatatgactcaggctaagttgaatgaagaatttccagaacacaattcatgctcagcattggtgtgcacaatggcagcgat |
37782871 |
T |
|
| Q |
101 |
tcaagccattgtttttgctctttgtatcgatagagattggaatcaatggaagctcggttacgatatcagacttcttactattgcttattcggtatgctcg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37782872 |
tcaagccattgtttttgctctttgtatcgatagagattggaatcaatggaagctcggttacgatatcagacttcttactattgcttattcggtatgctcg |
37782971 |
T |
|
| Q |
201 |
tagaaactcaatcaatcaaaccacttcaagttttttatttgagataggtag |
251 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37782972 |
tagaaactcaatcaatcaaaccaattcaagttttttatttgagataggtag |
37783022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 30 - 202
Target Start/End: Original strand, 37808178 - 37808350
Alignment:
| Q |
30 |
caggctaaattgaatgaagaatttccagaacacaattcatgctcagcattggtgtgcacaatggcagcgattcaagccattgtttttgctctttgtatcg |
129 |
Q |
| |
|
|||||||| ||||||||||||| |||| || ||||||||||||||||| ||||| |||||| ||| |||||||||||||| ||||||||||| ||| |
|
|
| T |
37808178 |
caggctaagttgaatgaagaatatccattccatcattcatgctcagcattgatgtgctcaatgggagcagttcaagccattgttgttgctctttgtgtcg |
37808277 |
T |
|
| Q |
130 |
atagagattggaatcaatggaagctcggttacgatatcagacttcttactattgcttattcggtatgctcgta |
202 |
Q |
| |
|
|||| ||||||| |||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||| |
|
|
| T |
37808278 |
atagggattggaccgaatggaagctgggttacgatatcaggcttctcactatggcttattcggtatgctcgta |
37808350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 199
Target Start/End: Original strand, 37792208 - 37792320
Alignment:
| Q |
87 |
acaatggcagcgattcaagccattgtttttgctctttgtatcgatagagattggaatcaatggaagctcggttacgatatcagacttcttactattgctt |
186 |
Q |
| |
|
||||||| ||| ||||||||||| ||||||||| ||||| | || ||||||| || ||||||||||| |||||| ||||||||||||| | | |||| |
|
|
| T |
37792208 |
acaatgggagcaattcaagccatcgtttttgctatttgtgtggacagagatttgacccaatggaagcttggttacaatatcagacttctcatggtagctt |
37792307 |
T |
|
| Q |
187 |
attcggtatgctc |
199 |
Q |
| |
|
||||||||||||| |
|
|
| T |
37792308 |
attcggtatgctc |
37792320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 199
Target Start/End: Original strand, 37801900 - 37802012
Alignment:
| Q |
87 |
acaatggcagcgattcaagccattgtttttgctctttgtatcgatagagattggaatcaatggaagctcggttacgatatcagacttcttactattgctt |
186 |
Q |
| |
|
||||||| ||| ||||||||||| ||||||||| ||||| | || ||||||| || ||||||||||| |||||| ||||||||||||| | | |||| |
|
|
| T |
37801900 |
acaatgggagcaattcaagccatcgtttttgctatttgtgtggacagagatttgacccaatggaagcttggttacaatatcagacttctcatggtagctt |
37801999 |
T |
|
| Q |
187 |
attcggtatgctc |
199 |
Q |
| |
|
||||||||||||| |
|
|
| T |
37802000 |
attcggtatgctc |
37802012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University