View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18313_low_28 (Length: 249)

Name: NF18313_low_28
Description: NF18313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18313_low_28
NF18313_low_28
[»] chr4 (14 HSPs)
chr4 (1-222)||(2376071-2376294)
chr4 (90-162)||(2360921-2360993)
chr4 (98-222)||(2381314-2381438)
chr4 (90-136)||(2380051-2380097)
chr4 (90-217)||(2460600-2460727)
chr4 (163-217)||(2367678-2367732)
chr4 (90-136)||(2390934-2390980)
chr4 (161-222)||(2486305-2486366)
chr4 (91-137)||(2525951-2525997)
chr4 (91-133)||(2536689-2536731)
chr4 (96-222)||(2547530-2547656)
chr4 (91-137)||(5101951-5101997)
chr4 (91-137)||(5106223-5106269)
chr4 (163-217)||(12126883-12126937)
[»] chr8 (1 HSPs)
chr8 (90-222)||(39516855-39516987)
[»] chr3 (1 HSPs)
chr3 (156-217)||(51763147-51763208)
[»] chr5 (2 HSPs)
chr5 (98-213)||(39252840-39252955)
chr5 (165-217)||(32268773-32268825)
[»] chr1 (2 HSPs)
chr1 (154-217)||(15837956-15838019)
chr1 (155-207)||(52085555-52085607)


Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2376071 - 2376294
Alignment:
Q  1 ctggttactttgtaacaatggtggcagcagcatcatcatccaaatccaacgcagnnnnnnn--ccctatgaagcgagcaagggcagcagtctgttcatat 98  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||         ||||||||| ||||||||||| ||||| |||||||||    
T  2376071 ctggttactttgtaacaatggtggcagcatcatcatcatccaaatccaaggcagaaaaaaaaaccctatgaaccgagcaagggcggcagtgtgttcatat 2376170  T
Q  99 ttaccagatgagttatgggaatgcatcatcaaattcctctccggcgacaacccctctttgaagtctctctccatcgtctccaaaacttttctctccatca 198  Q
    |||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2376171 ttaccatatgagttatgggaatacatcatcaaattcctcgccggcgacaacccctctttgaagtctctctccatcgtctccaaaacttttctctccatca 2376270  T
Q  199 ccaaccgtttccgattctcggtca 222  Q
    ||||||||||||||||||||||||    
T  2376271 ccaaccgtttccgattctcggtca 2376294  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 2360921 - 2360993
Alignment:
Q  90 tgttcatatttaccagatgagttatgggaatgcatcatcaaattcctctccggcgacaacccctctttgaagt 162  Q
    ||||| ||||||||||||||| ||||||||  ||||||||||||||||  |||||| |||||| |||||||||    
T  2360921 tgttcgtatttaccagatgagctatgggaacacatcatcaaattcctcagcggcgataaccccactttgaagt 2360993  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 222
Target Start/End: Original strand, 2381314 - 2381438
Alignment:
Q  98 tttaccagatgagttatgggaatgcatcatcaaattcctctccggcgacaacccctctttgaagtctctctccatcgtctccaaaacttttctctccatc 197  Q
    ||||||||||||  ||||||||| ||||||||||||||||   || ||| ||  | |||| |||||||| |||||||||||||||   || ||||| |||    
T  2381314 tttaccagatgacctatgggaatacatcatcaaattcctcaatggagaccactgcactttcaagtctctttccatcgtctccaaacagttactctcgatc 2381413  T
Q  198 accaaccgtttccgattctcggtca 222  Q
    |||||| || |||||||||| ||||    
T  2381414 accaacagtctccgattctccgtca 2381438  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 2380051 - 2380097
Alignment:
Q  90 tgttcatatttaccagatgagttatgggaatgcatcatcaaattcct 136  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||    
T  2380051 tgttcaaatttaccagatgagttatgggaatacatcatcaaattcct 2380097  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 217
Target Start/End: Complemental strand, 2460727 - 2460600
Alignment:
Q  90 tgttcatatttaccagatgagttatgggaatgcatcatcaaattcctctccggcgacaacccctctttgaagtctctctccatcgtctccaaaacttttc 189  Q
    |||||| |||||||||| ||  |||||||  ||||| |||||||||||  || | || ||| | |||| || ||||||||||| |||||||||   || |    
T  2460727 tgttcacatttaccagaggaaatatgggagagcatcttcaaattcctcgacgacaaccaccacactttcaaatctctctccatggtctccaaacagttcc 2460628  T
Q  190 tctccatcaccaaccgtttccgattctc 217  Q
    ||||||||||||| ||| ||||||||||    
T  2460627 tctccatcaccaatcgtctccgattctc 2460600  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 2367678 - 2367732
Alignment:
Q  163 ctctctccatcgtctccaaaacttttctctccatcaccaaccgtttccgattctc 217  Q
    |||| |||||||||||||||   ||||||||||||||||||||| ||||||||||    
T  2367678 ctctttccatcgtctccaaacaatttctctccatcaccaaccgtctccgattctc 2367732  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 2390934 - 2390980
Alignment:
Q  90 tgttcatatttaccagatgagttatgggaatgcatcatcaaattcct 136  Q
    |||||| |||||||||||||||| ||||||| |||||||||||||||    
T  2390934 tgttcaaatttaccagatgagttgtgggaatacatcatcaaattcct 2390980  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 2486366 - 2486305
Alignment:
Q  161 gtctctctccatcgtctccaaaacttttctctccatcaccaaccgtttccgattctcggtca 222  Q
    |||||||||| ||||||| |||   ||||| ||||||||||||||| |||||||||||||||    
T  2486366 gtctctctccctcgtctcaaaacagtttctgtccatcaccaaccgtctccgattctcggtca 2486305  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 2525997 - 2525951
Alignment:
Q  91 gttcatatttaccagatgagttatgggaatgcatcatcaaattcctc 137  Q
    |||||||||||||||| ||||||||||||  |||| |||||||||||    
T  2525997 gttcatatttaccagaggagttatgggaacacatcttcaaattcctc 2525951  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 133
Target Start/End: Complemental strand, 2536731 - 2536689
Alignment:
Q  91 gttcatatttaccagatgagttatgggaatgcatcatcaaatt 133  Q
    |||||||||||||||| ||||||||||||| |||| |||||||    
T  2536731 gttcatatttaccagaggagttatgggaatacatcttcaaatt 2536689  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 222
Target Start/End: Complemental strand, 2547656 - 2547530
Alignment:
Q  96 tatttaccagatgagttatgggaatgcatcatcaaattcctctccggcgacaacccctctttgaagtctctctccatcgtctccaaaacttttctctcca 195  Q
    |||||||||||||||||||||||   |||| |||||||||||   | | || |   | |||| || || ||||||||||||||||||   ||||| ||||    
T  2547656 tatttaccagatgagttatgggagcacatcttcaaattcctcaatgtctacgaggacgctttaaaatcgctctccatcgtctccaaacagtttctgtcca 2547557  T
Q  196 tcaccaaccgtttccgattctcggtca 222  Q
    ||||||||||| |||| ||||| ||||    
T  2547556 tcaccaaccgtctccggttctcagtca 2547530  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 5101951 - 5101997
Alignment:
Q  91 gttcatatttaccagatgagttatgggaatgcatcatcaaattcctc 137  Q
    ||||||||||||| ||||||||||||||  ||||| |||||||||||    
T  5101951 gttcatatttaccggatgagttatgggagcgcatcttcaaattcctc 5101997  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 5106223 - 5106269
Alignment:
Q  91 gttcatatttaccagatgagttatgggaatgcatcatcaaattcctc 137  Q
    ||||||||||||| ||||||||||||||  ||||| |||||||||||    
T  5106223 gttcatatttaccggatgagttatgggagggcatcttcaaattcctc 5106269  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 12126937 - 12126883
Alignment:
Q  163 ctctctccatcgtctccaaaacttttctctccatcaccaaccgtttccgattctc 217  Q
    |||||||||| |||||||||   ||||||||||||||||||||| ||| ||||||    
T  12126937 ctctctccattgtctccaaacaatttctctccatcaccaaccgtctcctattctc 12126883  T

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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 90 - 222
Target Start/End: Complemental strand, 39516987 - 39516855
Alignment:
Q  90 tgttcatatttaccagatgagttatgggaatgcatcatcaaattcctctccggcgacaacccctctttgaagtctctctccatcgtctccaaaacttttc 189  Q
    |||||||||||||| || ||  ||||||| |  ||| |||||||||||  ||| ||||||| | |||| |||||||||||||||||||||| |   ||||    
T  39516987 tgttcatatttaccggaggatatatgggagtctatcttcaaattcctcgacggtgacaaccacactttcaagtctctctccatcgtctccagacaatttc 39516888  T
Q  190 tctccatcaccaaccgtttccgattctcggtca 222  Q
    || |||||||||||||| || ||||||| ||||    
T  39516887 tcgccatcaccaaccgtctcagattctccgtca 39516855  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 51763147 - 51763208
Alignment:
Q  156 ttgaagtctctctccatcgtctccaaaacttttctctccatcaccaaccgtttccgattctc 217  Q
    ||||| |||||||||||||| ||||||   || |||||||||||| ||||||||||||||||    
T  51763147 ttgaattctctctccatcgtttccaaacagttcctctccatcacccaccgtttccgattctc 51763208  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 213
Target Start/End: Original strand, 39252840 - 39252955
Alignment:
Q  98 tttaccagatgagttatgggaatgcatcatcaaattcctctccggcgacaacccctctttgaagtctctctccatcgtctccaaaacttttctctccatc 197  Q
    ||||||||| |||||||||||||||||| | ||||||| |  ||  ||||| | | ||||||||||  ||||  ||||||||| |   ||||||||||||    
T  39252840 tttaccagaggagttatgggaatgcatcttgaaattccacaacgcagacaatcacactttgaagtccgtctctttcgtctccatacagtttctctccatc 39252939  T
Q  198 accaaccgtttccgat 213  Q
    | ||||||| ||||||    
T  39252940 agcaaccgtctccgat 39252955  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 32268825 - 32268773
Alignment:
Q  165 ctctccatcgtctccaaaacttttctctccatcaccaaccgtttccgattctc 217  Q
    ||||||||||||||||||   || |||||||||||||||||| | ||||||||    
T  32268825 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattctc 32268773  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 15837956 - 15838019
Alignment:
Q  154 ctttgaagtctctctccatcgtctccaaaacttttctctccatcaccaaccgtttccgattctc 217  Q
    |||| ||||| ||||| || |||||||||   ||||||||||||||||||||| ||||||||||    
T  15837956 ctttcaagtccctctcgatggtctccaaacagtttctctccatcaccaaccgtctccgattctc 15838019  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 52085607 - 52085555
Alignment:
Q  155 tttgaagtctctctccatcgtctccaaaacttttctctccatcaccaaccgtt 207  Q
    |||| ||||||| ||||||||||||||||  || || ||||||||||||||||    
T  52085607 tttggagtctctttccatcgtctccaaaaagttcctttccatcaccaaccgtt 52085555  T

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