View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18313_low_29 (Length: 246)
Name: NF18313_low_29
Description: NF18313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18313_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 31264258 - 31264044
Alignment:
| Q |
14 |
gaacactcagatgcaaatttgtctcaacagaagtctgaattcaaagaaagttgaaagacatggaatagagcatctccgtaatattggaaagatggtaatt |
113 |
Q |
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| T |
31264258 |
gaacactcaaatgcaaatttgtcgcaacagaagtctgaattcaaggaaagttgaaagacatggaatagagcatctccgtaatattggaaagatggtaatt |
31264159 |
T |
|
| Q |
114 |
tatccgataagtaataatttatatttatggatctcaatgttatgacttcatctcaatcaaaccctcaaatattgttaggactatctcctcaaaccttcat |
213 |
Q |
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| T |
31264158 |
tatccgatgagtaataatttatatttatggatctcaatgttatgacttcatctcaatcaaaccctcaaatattgttaggactatctcctcaaaccttcat |
31264059 |
T |
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| Q |
214 |
ctattgtaccatttc |
228 |
Q |
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||||||||||||||| |
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| T |
31264058 |
ctattgtaccatttc |
31264044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 22144845 - 22144698
Alignment:
| Q |
14 |
gaacactcagatgcaaatttgtctcaacagaagtctgaattcaaagaaagttgaaagacatggaatagagcatctccgt-aatattggaaagatggtaat |
112 |
Q |
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| T |
22144845 |
gaacaatcagatgcaaattcgtctcaacaaatgtctaaattcaagggaagttgaattacgtggaatagagcatctccgtcaatactggacagatggtgat |
22144746 |
T |
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| Q |
113 |
ttatccgataagtaataatttatatttatggatctcaatgttatgact |
160 |
Q |
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| T |
22144745 |
ttatccgatgagtaataatttatatttatggttcgcaatgttatgact |
22144698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 12212662 - 12212515
Alignment:
| Q |
14 |
gaacactcagatgcaaatttgtctcaacagaagtctgaattcaaagaaagttgaaagacatggaatagagcatctccgt-aatattggaaagatggtaat |
112 |
Q |
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||||| ||||||||||||| ||||||||||| |||| ||||||| | |||||||| || ||||||||||||||||||| |||| | || ||||| | || |
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| T |
12212662 |
gaacaatcagatgcaaattcgtctcaacagatgtctaaattcaagggaagttgaattacgtggaatagagcatctccgtcaatactagacagatgatgat |
12212563 |
T |
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| Q |
113 |
ttatccgataagtaataatttatatttatggatctcaatgttatgact |
160 |
Q |
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||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
12212562 |
ttatccgatgagtaataatttatatttatggttctcaatgttatgact |
12212515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 13814929 - 13815076
Alignment:
| Q |
14 |
gaacactcagatgcaaatttgtctcaacagaagtctgaattcaaagaaagttgaaagacatggaatagagcatctccgt-aatattggaaagatggtaat |
112 |
Q |
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||||| ||||||||||||| ||||||||||| |||| ||||||| | |||||||| || ||||||||||||||||||| |||| |||| ||||||| || |
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| T |
13814929 |
gaacaatcagatgcaaattcgtctcaacagatgtctaaattcaagggaagttgaattacgtggaatagagcatctccgtcaatactggatagatggtgat |
13815028 |
T |
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| Q |
113 |
ttatccgataagtaataatttatatttatggatctcaatgttatgact |
160 |
Q |
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||||| ||| |||||||||||||| |||||| ||||| |||||||||| |
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| T |
13815029 |
ttatctgatgagtaataatttatacttatggttctcagtgttatgact |
13815076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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