View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18313_low_3 (Length: 765)
Name: NF18313_low_3
Description: NF18313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18313_low_3 |
 | |
|
| [»] scaffold0431 (1 HSPs) |
| | |
|
| [»] scaffold0173 (1 HSPs) |
| | |
|
| [»] scaffold0484 (1 HSPs) |
| | |
|
| [»] scaffold0094 (1 HSPs) |
| | |
|
| [»] scaffold0632 (1 HSPs) |
| | |
|
| [»] scaffold0027 (1 HSPs) |
| | |
|
| [»] scaffold0497 (1 HSPs) |
| | |
|
| [»] scaffold0066 (1 HSPs) |
| | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
| [»] scaffold0703 (1 HSPs) |
| | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 619; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 3 - 749
Target Start/End: Complemental strand, 35039129 - 35038385
Alignment:
| Q |
3 |
gaggagcagcacagaccacaggatcaaagattcaaaggacaagggtgcgtgggtgcatggtaaggccgtacacccacgcgtatgggatcaaagaggccta |
102 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35039129 |
gaggagcaacatagaccacaggatcaaagattcaaagaacaagggtgcgtgggtgcatggtaaggccgtacacccacgcgtatgagatcaaagaggccta |
35039030 |
T |
|
| Q |
103 |
tatataggctgtagttcacaaaattcattcatttccaaatttcctttctctctcctctcnnnnnnnn-cacgtgaaagctctcctaatttcttcatcttc |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
35039029 |
tatataggctgtagttcacaaaattcattcatttccaaatttcctttctctctcctctccttttttctcacgtgaaagctctcctaatttcttcattttc |
35038930 |
T |
|
| Q |
202 |
tccgacggaagggatggg-ttccggcgcggtggccggtggtgcaccaccgtaccggagttttcaaaacactcctttttcaaaaacaattacatattatta |
300 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35038929 |
tccgacggaagggatggggttccggcgcggtggccggtggtgcaccaccgtgccggagttttcaaaacactcctttttcaaaaacaattacatattatta |
35038830 |
T |
|
| Q |
301 |
taccctttttcgtgtagatgatagatccggacttagatttcaaagaaaagcaacaacacgttctagatctacaatcaaacaaacacgaaaataaaacact |
400 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
35038829 |
tatcctttttcgtgtagatgatagatccggacttagatttcaaagaaaagcaacaacacgttctagatctacaatcaaacaa-cacgaaaataaaatact |
35038731 |
T |
|
| Q |
401 |
accttctttacctcggattccgatctgctctaacaaggaggagccgattcggtttgtgcttcagcgttgtaaggccggttcagtttcttcttcttccttc |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35038730 |
accttctttacctcggattccgatctgctctaacaaggaggagccgattcggtttgtgcttcagcgttgtaaggccggttcagtttcttcttc---cttc |
35038634 |
T |
|
| Q |
501 |
acgctccgatccgatctgcttcctctctccgatccggttgcgttccaagcttgtacctctgattcggtttgttgttgacgagttgtacggattcgtgaat |
600 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35038633 |
acgctccgatccaatctgcttcctctctccgatccagttgcgttccaagcttgtacctctgattcggtttgttgttgacgagttgtacggattcgtgaat |
35038534 |
T |
|
| Q |
601 |
tagtgctgactggattcacgatctgaactgtttgtgtgcttgggtcggaaactatgatcgaattccttgtattggttatttggaggattcgtgttgttgt |
700 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
35038533 |
cagtgcttactggattcacgatctgaactgtttgtgtgcttggattggaacctatgatcgaattccttgtattggttatttggaggattcgtgttgctgt |
35038434 |
T |
|
| Q |
701 |
gaatcggtttgtatggaggggtttgaaaaattgttggattggttgtttc |
749 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
35038433 |
gaatcggtttgtatggaggggtttggaaaattgttggattggttgtttc |
35038385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 220 - 429
Target Start/End: Original strand, 26718658 - 26718867
Alignment:
| Q |
220 |
ttccggcgcggtggccggtggtgcaccaccgtaccggagttttcaaaacactcctttttcaaaaacaattacatattattataccctttttcgtgtagat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||| | |
|
|
| T |
26718658 |
ttccggcgcggtggccggtggtgcaccaccgtgccggagttttcaaaaccctcctttttcaaaaacaattacatattattatatcctttttcgcataggt |
26718757 |
T |
|
| Q |
320 |
gatagatccggacttagatttcaaagaaaagcaacaacacgttctagatctacaatcaaacaaacacgaaaataaaacactacc-ttctttacctcggat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| || |||||||||||| |
|
|
| T |
26718758 |
gatagatccggacttagatttcaaagaaaagcaacaacacgttctagatctacattcaaac-aacacgaaaataaaatactacctttttttacctcggat |
26718856 |
T |
|
| Q |
419 |
tccgatctgct |
429 |
Q |
| |
|
||||||||||| |
|
|
| T |
26718857 |
tccgatctgct |
26718867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 220 - 429
Target Start/End: Original strand, 26732846 - 26733055
Alignment:
| Q |
220 |
ttccggcgcggtggccggtggtgcaccaccgtaccggagttttcaaaacactcctttttcaaaaacaattacatattattataccctttttcgtgtagat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||| | |
|
|
| T |
26732846 |
ttccggcgcggtggccggtggtgcaccaccgtgccggagttttcaaaaccctcctttttcaaaaacaattacatattattatatcctttttcgcataggt |
26732945 |
T |
|
| Q |
320 |
gatagatccggacttagatttcaaagaaaagcaacaacacgttctagatctacaatcaaacaaacacgaaaataaaacactacc-ttctttacctcggat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| || |||||||||||| |
|
|
| T |
26732946 |
gatagatccggacttagatttcaaagaaaagcaacaacacgttctagatctacattcaaac-aacacgaaaataaaatactacctttttttacctcggat |
26733044 |
T |
|
| Q |
419 |
tccgatctgct |
429 |
Q |
| |
|
||||||||||| |
|
|
| T |
26733045 |
tccgatctgct |
26733055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 3 - 147
Target Start/End: Complemental strand, 21069364 - 21069218
Alignment:
| Q |
3 |
gaggagcagcacagaccacaggatcaaag--attcaaaggacaagggtgcgtgggtgcatggtaaggccgtacacccacgcgtatgggatcaaagaggcc |
100 |
Q |
| |
|
|||||||| || |||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||| || || ||||||||||||||||| |
|
|
| T |
21069364 |
gaggagcaacatagaccacaggatcaaaacaaatcaaaggacaagggtgcgtgggtgcatggtaaggtcgtacacctacacgcatgggatcaaagaggcc |
21069265 |
T |
|
| Q |
101 |
tatatataggctgtagttcacaaaattcattcatttccaaatttcct |
147 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
21069264 |
tatatataggctgtagttcacagaattcattcatttccaattttcct |
21069218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 44373781 - 44373740
Alignment:
| Q |
220 |
ttccggcgcggtggccggtggtgcaccaccgtaccggagttt |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
44373781 |
ttccggcgcggtggccggtggtgcaccaccgtgccggagttt |
44373740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 44389692 - 44389651
Alignment:
| Q |
220 |
ttccggcgcggtggccggtggtgcaccaccgtaccggagttt |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
44389692 |
ttccggcgcggtggccggtggtgcaccaccgtgccggagttt |
44389651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 25262634 - 25262557
Alignment:
| Q |
220 |
ttccggcgcggtggccggtggt-gcaccaccgtaccggagttttcaaaacactcctttttc-aaaaacaattacatatt |
296 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||| ||||||||| | || ||||| ||||| ||||||||||| |
|
|
| T |
25262634 |
ttccggcgcggtggccggtggtggcaccaccgcgccggag-tttcaaaactcacccttttcaaaaaaaaattacatatt |
25262557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 570; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 3 - 746
Target Start/End: Original strand, 20371693 - 20372432
Alignment:
| Q |
3 |
gaggagcagcacagaccacaggatcaaagattcaaaggacaagggtgcgtgggtgcatggtaaggccgtacacccacgcgtatgggatcaaagaggccta |
102 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
20371693 |
gaggagcaacatagaccacaggatcaaagattcaaaggacaagggtgtgtgggtgcatggtaaggccatacacccacgcgtatgggatcaaagagggcta |
20371792 |
T |
|
| Q |
103 |
tatataggctgtagttcacaaaattcattcatttccaaatttcctttctctctcctctcnnnnnnnncacgtgaaagctctcctaatttcttcatcttct |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | | | |||||||||||||||| |||||| |
|
|
| T |
20371793 |
tatataggctgtagttcacaaaattcattcatttccaaatttcctt-ctctctcctcacacgttttctcccttct--ctctcctaatttcttcgtcttct |
20371889 |
T |
|
| Q |
203 |
ccgacggaagggatggg-ttccggcgcggtggccggtggtgcaccaccgtaccggagttttcaaaacactcctttttcaaaaacaattacatattattat |
301 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20371890 |
ccgacggaagggatggggttccggcgcggtggccggtggtgcaccaccgtgccggagttttcaaaacactcctttttcaaaaacaattacatattattat |
20371989 |
T |
|
| Q |
302 |
accctttttcgtgtagatgatagatccggacttagatttcaaagaaaagcaacaacacgttctagatctacaatcaaacaaacacgaaaataaaacacta |
401 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
20371990 |
atcttttttcgtgtagatgatagatccggacttagatttcaaagaaaagcaacaacacgt-ctagatctacaatcaaacaat-acgaaaataaaatacta |
20372087 |
T |
|
| Q |
402 |
ccttctttacctcggattccgatctgctctaacaaggaggagccgattcggtttgtgcttcagcgttgtaaggccggttcagtttcttcttcttccttca |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20372088 |
ccttctttacctcggattccgatctgctctaacaaggaggagccgattcggtttgtgcttcagcgttgtaaggccggttcagtttcttcttcttccttca |
20372187 |
T |
|
| Q |
502 |
cgctccgatccgatctgcttcctctctccgatccggttgcgttccaagcttgtacctctgattcggtttgttgttgacgagttgtacggattcgtgaatt |
601 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20372188 |
cgctccgatctgatctgcttcctctctccgatccggttgcgttccaagcttgtacctctgattcggtttgttgttgacgagttgtacggattcgtgaatc |
20372287 |
T |
|
| Q |
602 |
agtgctgactggattcacgatctgaactgtttgtgtgcttgggtcggaaactatgatcgaattccttgtattggttatttggaggattcgtgttgttgtg |
701 |
Q |
| |
|
|||| | |||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
20372288 |
agtgtttactggattcatgatctgaaatgtttgtgtgcttggatcggaaactatgatcgaattccttgtattggttatttggaggattcgtgttgctgtg |
20372387 |
T |
|
| Q |
702 |
aatcggtttgtatggaggggtttgaaaaattgttggattggttgt |
746 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20372388 |
aatcggtttgtatggaggggtttgaaaaattgttggatcggttgt |
20372432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 3 - 746
Target Start/End: Original strand, 20397417 - 20398156
Alignment:
| Q |
3 |
gaggagcagcacagaccacaggatcaaagattcaaaggacaagggtgcgtgggtgcatggtaaggccgtacacccacgcgtatgggatcaaagaggccta |
102 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
20397417 |
gaggagcaacatagaccacaggatcaaagattcaaaggacaagggtgtgtgggtgcatggtaaggccatacacccacgcgtatgggatcaaagagggcta |
20397516 |
T |
|
| Q |
103 |
tatataggctgtagttcacaaaattcattcatttccaaatttcctttctctctcctctcnnnnnnnncacgtgaaagctctcctaatttcttcatcttct |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | | | |||||||||||||||| |||||| |
|
|
| T |
20397517 |
tatataggctgtagttcacaaaattcattcatttccaaatttcctt-ctctctcctcacacgttttctcccttct--ctctcctaatttcttcgtcttct |
20397613 |
T |
|
| Q |
203 |
ccgacggaagggatggg-ttccggcgcggtggccggtggtgcaccaccgtaccggagttttcaaaacactcctttttcaaaaacaattacatattattat |
301 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20397614 |
ccgacggaagggatggggttccggcgcggtggccggtggtgcaccaccgtgccggagttttcaaaacactcctttttcaaaaacaattacatattattat |
20397713 |
T |
|
| Q |
302 |
accctttttcgtgtagatgatagatccggacttagatttcaaagaaaagcaacaacacgttctagatctacaatcaaacaaacacgaaaataaaacacta |
401 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
20397714 |
atcctttttcgtgtagatgatagatccggacttagatttcaaagaaaagcaacaacacgt-ctagatctacaatcaaacaat-acgaaaataaaatacta |
20397811 |
T |
|
| Q |
402 |
ccttctttacctcggattccgatctgctctaacaaggaggagccgattcggtttgtgcttcagcgttgtaaggccggttcagtttcttcttcttccttca |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20397812 |
ccttctttacctcggattccgatctgctctaacaaggaggagccgattcggtttatgcttcagcgttgtaaggccggttcagtttcttcttcttccttca |
20397911 |
T |
|
| Q |
502 |
cgctccgatccgatctgcttcctctctccgatccggttgcgttccaagcttgtacctctgattcggtttgttgttgacgagttgtacggattcgtgaatt |
601 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20397912 |
cgctccgatctgatttgcttcctctctccgatccggttgcgttccaagcttgtacctctgattcggtttgttgttgacgagttgtacggattcgtgaatc |
20398011 |
T |
|
| Q |
602 |
agtgctgactggattcacgatctgaactgtttgtgtgcttgggtcggaaactatgatcgaattccttgtattggttatttggaggattcgtgttgttgtg |
701 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
20398012 |
agtgcttactggattcacgatctgaaatgtttgtgtgcttggattggaaactatgatcgaattccttgtattggttatttggaggattcgtgttgctgtg |
20398111 |
T |
|
| Q |
702 |
aatcggtttgtatggaggggtttgaaaaattgttggattggttgt |
746 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
20398112 |
aatcggtttgtatggaggggtttggaaaattgttggatcggttgt |
20398156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 589 - 637
Target Start/End: Complemental strand, 17639021 - 17638973
Alignment:
| Q |
589 |
ggattcgtgaattagtgctgactggattcacgatctgaactgtttgtgt |
637 |
Q |
| |
|
|||||||||||| |||| | ||||||||||||||||||| ||||||||| |
|
|
| T |
17639021 |
ggattcgtgaatcagtgtttactggattcacgatctgaaatgtttgtgt |
17638973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 688 - 739
Target Start/End: Original strand, 22961298 - 22961349
Alignment:
| Q |
688 |
ttcgtgttgttgtgaatcggtttgtatggaggggtttgaaaaattgttggat |
739 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||| |||||| |||||| |
|
|
| T |
22961298 |
ttcgtgttcttgtgactcggtttgtatggaggggttttgaaaattattggat |
22961349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 261
Target Start/End: Original strand, 29185240 - 29185310
Alignment:
| Q |
191 |
tcttcatcttctccgacggaagggatgggttccggcgcggtggccggtggt-gcaccaccgtaccggagttt |
261 |
Q |
| |
|
||||||||||||||||||| | | || |||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
29185240 |
tcttcatcttctccgacgggattg-tgtcttccggcgcggtggccggtggtggcaccaccgtgccggagttt |
29185310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 31411855 - 31411814
Alignment:
| Q |
220 |
ttccggcgcggtggccggtggt-gcaccaccgtaccggagtt |
260 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
31411855 |
ttccggcgcggtggccggtggtggcaccaccgcaccggagtt |
31411814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 440; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 189 - 749
Target Start/End: Original strand, 18954592 - 18955154
Alignment:
| Q |
189 |
tttcttcatcttctccgacggaagggatggg-ttccggcgcggtggccggtggtgcaccaccgtaccggagttttcaaaacactcctttttcaaaaa-ca |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| || |
|
|
| T |
18954592 |
tttcttcatcttctccgacggaagggatggggttccggcgcggtggccggtggtgcaccaccgcgccggagttttcaaaacactcatttttcaaaaaaca |
18954691 |
T |
|
| Q |
287 |
attacatattattataccctttttcgtgtagatgatagatccggacttagatttcaaagaaaagcaacaacacgttctagatctacaatcaaacaaacac |
386 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
18954692 |
attacatattattatatcctttttcgtgtagatgatagatccggacttagatttcaaagaaaagcaacaacgcgttctagatctacaatcaaacaa-cac |
18954790 |
T |
|
| Q |
387 |
gaaaataaaac-actaccttctttacctcggattccgatctgctctaacaaggaggagccgattcggtttgtgcttcagcgttgtaaggccggttcagtt |
485 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
18954791 |
gaaaataaaaatactaccttctttacctcggattccgatctactctagcaaggaggagccgattcggtttatgcttcagcgttgtaaggccggttcagtt |
18954890 |
T |
|
| Q |
486 |
tcttcttcttccttcacgctccgatccgatctgcttcctctctccgatccggttgcgttccaagcttgtacctctgattcggtttgttgttgacgagttg |
585 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
18954891 |
tcttcttcttccttcacgctccgatccgatcttcttcctctctccgatccggttgcgttccaagctggtacctctgattcgttttgttgttgacgagttg |
18954990 |
T |
|
| Q |
586 |
tacggattcgtgaattagtgctgactggattcacgatctgaactgtttgtgtgcttgggtcggaaactatgatcgaattccttgtattggttatttggag |
685 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||| ||||||| |||| |||||||||||||||||| ||| |||||||||||| |||| |
|
|
| T |
18954991 |
tacggattcgtgaatcagtgcttactggattcacgatctgaactgattgtgtgtttggatcggaaactatgatcgaactccgtgtattggttatccggag |
18955090 |
T |
|
| Q |
686 |
gattcgtgttgttgtgaatcggtttgtatggaggggtttgaaaaattgttggattggttgtttc |
749 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18955091 |
gattcgtgttgctgtgaatcggtttgtatggaggggtttggaaaattgttggattggttgtttc |
18955154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 220 - 429
Target Start/End: Original strand, 27551890 - 27552097
Alignment:
| Q |
220 |
ttccggcgcggtggccggtggtgcaccaccgtaccggagttttcaaaacactcctttttcaaaaacaattacatattattataccctttttcgtgtagat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||| || ||| | || | | |||||||| ||||||| |
|
|
| T |
27551890 |
ttccggcgcggtggccggtggtgcaccaccgtgccggagttttcaaaccactcttttttcaaaacaaactacctttttaaacatcctttttcatgtagat |
27551989 |
T |
|
| Q |
320 |
gatagatccggacttagatttcaaagaaaagcaacaacacgttctagatctacaatcaaacaaacacgaaaataaaacactaccttctttacctcggatt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||| |
|
|
| T |
27551990 |
gatagatccggacttagatttcaaagaaaagcaataacacgttctagatctacaatcaaacaa--acgaaaataaaatactaccttttttacctcggatt |
27552087 |
T |
|
| Q |
420 |
ccgatctgct |
429 |
Q |
| |
|
|||||||||| |
|
|
| T |
27552088 |
ccgatctgct |
27552097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 3 - 159
Target Start/End: Complemental strand, 15910280 - 15910125
Alignment:
| Q |
3 |
gaggagcagcacagaccacaggatcaaagattcaaaggacaagggtgcgtgggtgcatggtaaggccgtacacccacgcgtatgggatcaaagaggccta |
102 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15910280 |
gaggagcaacatagaccacaggatcaaaggatcaaaggaccagggtgcgtggatgcatggcaaggccgtacacccacgcgtatgggatcaaagaggccta |
15910181 |
T |
|
| Q |
103 |
tatataggctgtagttcacaaaattcattcatttccaaatttcctttctctctcctc |
159 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||| |||||||||||| |
|
|
| T |
15910180 |
tatataggctgtagttcacagaattcattcatttccagctttcc-ttctctctcctc |
15910125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 3 - 159
Target Start/End: Complemental strand, 15924523 - 15924368
Alignment:
| Q |
3 |
gaggagcagcacagaccacaggatcaaagattcaaaggacaagggtgcgtgggtgcatggtaaggccgtacacccacgcgtatgggatcaaagaggccta |
102 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||||||| ||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15924523 |
gaggagcaacatagaccacaggatcaaaggatcaaaggaccagggtgcgtggatccatggcaaggccgtacacccacgcgtatgggatcaaagaggccta |
15924424 |
T |
|
| Q |
103 |
tatataggctgtagttcacaaaattcattcatttccaaatttcctttctctctcctc |
159 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||| |||||||||||| |
|
|
| T |
15924423 |
tatataggctgtagttcacagaattcattcatttccagctttcc-ttctctctcctc |
15924368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 28469263 - 28469330
Alignment:
| Q |
220 |
ttccggcgcggtggccggtggtgcaccaccgtaccggagttttcaaaacactcctttttcaaaaacaa |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28469263 |
ttccggcgcggtggccggtggtgcaccaccgtgccggagttttcaaaacactcctttttcaaaaacaa |
28469330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 220 - 261
Target Start/End: Original strand, 9184899 - 9184940
Alignment:
| Q |
220 |
ttccggcgcggtggccggtggtgcaccaccgtaccggagttt |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9184899 |
ttccggcgcggtggccggtggtgcaccaccgtgccggagttt |
9184940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0431 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: scaffold0431
Description:
Target: scaffold0431; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 222 - 515
Target Start/End: Complemental strand, 3242 - 2950
Alignment:
| Q |
222 |
ccggcgcggtggccggtggtgcaccaccgtaccggagttttcaaaacactcctttttcaaaaacaattacatattattataccctttttcgtgtagatga |
321 |
Q |
| |
|
||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3242 |
ccggcacggtggccggtggtgtaccaccgtgccggagttttcaaaacactcctttttcaaaaacaattacatattattatatcctttttcgtgtagatga |
3143 |
T |
|
| Q |
322 |
tagatccggacttagatttcaaagaaaagcaacaacacgttctagatctacaatcaaacaaacacgaaaataaaacactaccttctttacctcggattcc |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
3142 |
tagatccggacttagatttcaaagaaaagcaacaacacgttctagatctacaatcaaac-aacacgaaaataaaatactacattctttacctcggattcc |
3044 |
T |
|
| Q |
422 |
gatctgctctaacaaggaggagccgattcggtttgtgcttcagcgttgtaaggccggttcagtttcttcttcttccttcacgctccgatccgat |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3043 |
gatctgctctaacaaggaggagccgattcggtttgtgcttcagcgttgtaaggccggttcgatttcttcttcttccttcacgctccgatccgat |
2950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 222 - 515
Target Start/End: Original strand, 12426733 - 12427025
Alignment:
| Q |
222 |
ccggcgcggtggccggtggtgcaccaccgtaccggagttttcaaaacactcctttttcaaaaacaattacatattattataccctttttcgtgtagatga |
321 |
Q |
| |
|
||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12426733 |
ccggcacggtggccggtggtgtaccaccgtgccggagttttcaaaacactcctttttcaaaaacaattacatattattatatcctttttcgtgtagatga |
12426832 |
T |
|
| Q |
322 |
tagatccggacttagatttcaaagaaaagcaacaacacgttctagatctacaatcaaacaaacacgaaaataaaacactaccttctttacctcggattcc |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
12426833 |
tagatccggacttagatttcaaagaaaagcaacaacacgttctagatctacaatcaaac-aacacgaaaataaaatactacattctttacctcggattcc |
12426931 |
T |
|
| Q |
422 |
gatctgctctaacaaggaggagccgattcggtttgtgcttcagcgttgtaaggccggttcagtttcttcttcttccttcacgctccgatccgat |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12426932 |
gatctgctctaacaaggaggagccgattcggtttgtgcttcagcgttgtaaggccggttcgatttcttcttcttccttcacgctccgatccgat |
12427025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 21531358 - 21531425
Alignment:
| Q |
220 |
ttccggcgcggtggccggtggtgcaccaccgtaccggagttttcaaaacactcctttttcaaaaacaa |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21531358 |
ttccggcgcggtggccggtggtgcaccaccgtgccggagttttcaaaacactcctttttcaaaaacaa |
21531425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0173 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0173
Description:
Target: scaffold0173; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 244 - 515
Target Start/End: Original strand, 1 - 274
Alignment:
| Q |
244 |
accaccgtaccggagttttcaaaacactcctttttcaaaaa---caattacatattattataccctttttcgtgtagatgatagatccggacttagattt |
340 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1 |
accaccgtgccggagttttcaaaacactcctttttcaaaaaaaacaattacatattattatatcctttttcgtatagatgatagatccggacttagattt |
100 |
T |
|
| Q |
341 |
caaagaaaagcaacaacacgttctagatctacaatcaaacaaacacgaaaataaaacactaccttctttacctcggattccgatctgctctaacaaggag |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
101 |
caaagaaaagcaacaacacgttctagatctacaatcaaacaa-cacgaaaataaaatactaccttctttacctcggattccgatatgctctaagaaggag |
199 |
T |
|
| Q |
441 |
gagccgattcggtttgtgcttcagcgttgtaaggccggttcagtttcttcttcttccttcacgctccgatccgat |
515 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
200 |
gagccaattcggtttgtgcttcagcgttgtaaggccggttcggtttcttcttcttctttcacgctccgatccgat |
274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 159; Significance: 3e-84; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 220 - 429
Target Start/End: Original strand, 1887941 - 1888150
Alignment:
| Q |
220 |
ttccggcgcggtggccggtggtgcaccaccgtaccggagttttcaaaacactcctttttcaaaaacaattacatattattataccctttttcgtgtagat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||| | |
|
|
| T |
1887941 |
ttccggcgcggtggccggtggtgcaccaccgtgccggagttttcaaaaccctcctttttcaaaaacaattacatattattatatcctttttcgcataggt |
1888040 |
T |
|
| Q |
320 |
gatagatccggacttagatttcaaagaaaagcaacaacacgttctagatctacaatcaaacaaacacgaaaataaaacactacc-ttctttacctcggat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| || |||||||||||| |
|
|
| T |
1888041 |
gatagatccggacttagatttcaaagaaaagcaacaacacgttctagatctacattcaaac-aacacgaaaataaaatactacctttttttacctcggat |
1888139 |
T |
|
| Q |
419 |
tccgatctgct |
429 |
Q |
| |
|
||||||||||| |
|
|
| T |
1888140 |
tccgatctgct |
1888150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 220 - 429
Target Start/End: Original strand, 1902042 - 1902251
Alignment:
| Q |
220 |
ttccggcgcggtggccggtggtgcaccaccgtaccggagttttcaaaacactcctttttcaaaaacaattacatattattataccctttttcgtgtagat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||| | |
|
|
| T |
1902042 |
ttccggcgcggtggccggtggtgcaccaccgtgccggagttttcaaaaccctcctttttcaaaaacaattacatattattatatcctttttcgcataggt |
1902141 |
T |
|
| Q |
320 |
gatagatccggacttagatttcaaagaaaagcaacaacacgttctagatctacaatcaaacaaacacgaaaataaaacactacc-ttctttacctcggat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| || |||||||||||| |
|
|
| T |
1902142 |
gatagatccggacttagatttcaaagaaaagcaacaacacgttctagatctacattcaaac-aacacgaaaataaaatactacctttttttacctcggat |
1902240 |
T |
|
| Q |
419 |
tccgatctgct |
429 |
Q |
| |
|
||||||||||| |
|
|
| T |
1902241 |
tccgatctgct |
1902251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 220 - 429
Target Start/End: Original strand, 24187140 - 24187349
Alignment:
| Q |
220 |
ttccggcgcggtggccggtggtgcaccaccgtaccggagttttcaaaacactcctttttcaaaaacaattacatattattataccctttttcgtgtagat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||| | |
|
|
| T |
24187140 |
ttccggcgcggtggccggtggtgcaccaccgtgccggagttttcaaaaccctcctttttcaaaaacaattacatattattatatcctttttcgcataggt |
24187239 |
T |
|
| Q |
320 |
gatagatccggacttagatttcaaagaaaagcaacaacacgttctagatctacaatcaaacaaacacgaaaataaaacactacc-ttctttacctcggat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| || |||||||||||| |
|
|
| T |
24187240 |
gatagatccggacttagatttcaaagaaaagcaacaacacgttctagatctacattcaaac-aacacgaaaataaaatactacctttttttacctcggat |
24187338 |
T |
|
| Q |
419 |
tccgatctgct |
429 |
Q |
| |
|
||||||||||| |
|
|
| T |
24187339 |
tccgatctgct |
24187349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 259
Target Start/End: Complemental strand, 18788194 - 18788155
Alignment:
| Q |
220 |
ttccggcgcggtggccggtggtgcaccaccgtaccggagt |
259 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
18788194 |
ttccggcacggtggccggtggtgcaccaccgtgccggagt |
18788155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 704 - 746
Target Start/End: Complemental strand, 36899030 - 36898988
Alignment:
| Q |
704 |
tcggtttgtatggaggggtttgaaaaattgttggattggttgt |
746 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||| |||||| |
|
|
| T |
36899030 |
tcggtttctatggaggggtttggaaaattgttggatcggttgt |
36898988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 149; Significance: 3e-78; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 220 - 429
Target Start/End: Original strand, 19827585 - 19827795
Alignment:
| Q |
220 |
ttccggcgcggtggccggtggtgcaccaccgtaccggagttttcaaaacactcctttttcaaaaacaattacatattattataccctttttcgtgtagat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||| |||||||||||||| |||||||||| ||| | |
|
|
| T |
19827585 |
ttccggcgcggtggccggtggtgcaccaccgtgccggagttttcaaaaccctcctctttcaaaaacaaatacatattattatatcctttttcgtataggt |
19827684 |
T |
|
| Q |
320 |
gatagatccggacttagatttcaaagaaaagcaacaacacgttctagatctacaatcaaacaaacacgaaaataaaacactacc--ttctttacctcgga |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||| || ||||||||||| |
|
|
| T |
19827685 |
gatagatccggacttagatttcaaagaaaagcaacaacacgttctagatctaatatcaaac-aacacgaaaataaaatactaccttttttttacctcgga |
19827783 |
T |
|
| Q |
418 |
ttccgatctgct |
429 |
Q |
| |
|
|||||||||||| |
|
|
| T |
19827784 |
ttccgatctgct |
19827795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 15390396 - 15390553
Alignment:
| Q |
3 |
gaggagcagcacagaccacaggatcaaagattcaaaggacaagggtgcgtgggtgcatggtaaggccgtacacccacgcgtatgggatcaaagaggccta |
102 |
Q |
| |
|
|||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15390396 |
gaggagcaacatagatcacaggatcaaagattcaaaggacaagggtgcgtgggtgcatggtaaggccgtacacccacgcgtatgggatcaaagaggccta |
15390495 |
T |
|
| Q |
103 |
tatataggctgtagttcacaaaattcattcatttccaaatttcctttctctctcctctc |
161 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15390496 |
tatataggctgtag-tcacaaaattcattcatttccaaatttcctttctctctcctctc |
15390553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 284
Target Start/End: Original strand, 30996951 - 30997015
Alignment:
| Q |
220 |
ttccggcgcggtggccggtggt-gcaccaccgtaccggagttttcaaaacactcctttttcaaaaa |
284 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||| ||||||||| | || |||||||||| |
|
|
| T |
30996951 |
ttccggcgcggtggccggtggtggcaccaccgcgccggag-tttcaaaactcacccttttcaaaaa |
30997015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 9e-69; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 3 - 159
Target Start/End: Original strand, 2334929 - 2335084
Alignment:
| Q |
3 |
gaggagcagcacagaccacaggatcaaagattcaaaggacaagggtgcgtgggtgcatggtaaggccgtacacccacgcgtatgggatcaaagaggccta |
102 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2334929 |
gaggagcagcatagaccacaggatcaaagattcaaaggacaagggtgcgtgggtgcatggtaaggccgtacacccacgcgtatgggatcaaagaggccta |
2335028 |
T |
|
| Q |
103 |
tatataggctgtagttcacaaaattcattcatttccaaatttcctttctctctcctc |
159 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||| |||||| |||||||||||| |
|
|
| T |
2335029 |
tatataggctgtagttcacaaaaatcattcatctccagatttcc-ttctctctcctc |
2335084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 325 - 373
Target Start/End: Complemental strand, 11949119 - 11949071
Alignment:
| Q |
325 |
atccggacttagatttcaaagaaaagcaacaacacgttctagatctaca |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11949119 |
atccggacttagatttcaaagaaaagcaacaacatgttctagatctaca |
11949071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 698 - 746
Target Start/End: Complemental strand, 45497543 - 45497495
Alignment:
| Q |
698 |
tgtgaatcggtttgtatggaggggtttgaaaaattgttggattggttgt |
746 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
45497543 |
tgtgaatcggtttgtatggaggggtttggaaaattgttggatcggttgt |
45497495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 2335103 - 2335151
Alignment:
| Q |
180 |
ctctcctaatttcttcatcttctccgacggaagggat-gggttccggcg |
227 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2335103 |
ctctcctattttcttcatcttctccgacggaagggatggggttccggcg |
2335151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0484 (Bit Score: 125; Significance: 6e-64; HSPs: 1)
Name: scaffold0484
Description:
Target: scaffold0484; HSP #1
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 3 - 159
Target Start/End: Original strand, 10483 - 10638
Alignment:
| Q |
3 |
gaggagcagcacagaccacaggatcaaagattcaaaggacaagggtgcgtgggtgcatggtaaggccgtacacccacgcgtatgggatcaaagaggccta |
102 |
Q |
| |
|
|||||||| || |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10483 |
gaggagcaacatagaccacaagatcaaagattcaaaggacaagggtgcatgggtgcatggtaaggccgtacacccacgcgtatgggatcaaagaggccta |
10582 |
T |
|
| Q |
103 |
tatataggctgtagttcacaaaattcattcatttccaaatttcctttctctctcctc |
159 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
10583 |
tatataggttgtagttcacaaaattcattcatttccaattttcc-ttctctctcctc |
10638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 105; Significance: 5e-52; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 3 - 159
Target Start/End: Original strand, 29584 - 29739
Alignment:
| Q |
3 |
gaggagcagcacagaccacaggatcaaagattcaaaggacaagggtgcgtgggtgcatggtaaggccgtacacccacgcgtatgggatcaaagaggccta |
102 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||||||| ||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29584 |
gaggagcaacatagaccacaggatcaaaggatcaaaggaccagggtgcgtggatccatggcaaggccgtacacccacgcgtatgggatcaaagaggccta |
29683 |
T |
|
| Q |
103 |
tatataggctgtagttcacaaaattcattcatttccaaatttcctttctctctcctc |
159 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||| |||||||||||| |
|
|
| T |
29684 |
tatataggctgtagttcacagaattcattcatttccagctttcc-ttctctctcctc |
29739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0632 (Bit Score: 103; Significance: 7e-51; HSPs: 1)
Name: scaffold0632
Description:
Target: scaffold0632; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 367 - 508
Target Start/End: Complemental strand, 5361 - 5222
Alignment:
| Q |
367 |
atctacaatcaaacaaacacgaaaataaaacactaccttctttacctcggattccgatctgctctaacaaggaggagccgattcggtttgtgcttcagcg |
466 |
Q |
| |
|
|||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
5361 |
atctacaatcaaacaaac--ggaaataaaatactaccttctttacctcggattccgatctgttctagcaaggaggagccgaatcggtttgtgcttcagcg |
5264 |
T |
|
| Q |
467 |
ttgtaaggccggttcagtttcttcttcttccttcacgctccg |
508 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5263 |
ctgcaaggccggttcagtttcttcttcttccttcacgctccg |
5222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 595 - 693
Target Start/End: Original strand, 65052 - 65152
Alignment:
| Q |
595 |
gtgaattagtgctgactggattcacgatctgaactgtttgtgtgcttgggtcggaaactatgatcgaattccttgta-ttggtta-tttggaggattcgt |
692 |
Q |
| |
|
|||||| |||| | ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
65052 |
gtgaatcagtgtttactggattcacgatctgaaatatttgtgtgcttgggtcggaaactatgatcgaattccttgtatttggttattttggaggattcgt |
65151 |
T |
|
| Q |
693 |
g |
693 |
Q |
| |
|
| |
|
|
| T |
65152 |
g |
65152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 688 - 746
Target Start/End: Complemental strand, 20733885 - 20733827
Alignment:
| Q |
688 |
ttcgtgttgttgtgaatcggtttgtatggaggggtttgaaaaattgttggattggttgt |
746 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
20733885 |
ttcgtgttcttgtgaatcggtttgtatggaggggtttggaaaattgttggatcggttgt |
20733827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 688 - 746
Target Start/End: Complemental strand, 20725946 - 20725888
Alignment:
| Q |
688 |
ttcgtgttgttgtgaatcggtttgtatggaggggtttgaaaaattgttggattggttgt |
746 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
20725946 |
ttcgtgttcttgagaatcggtttgtatggaggggtttggaaaattgttggatcggttgt |
20725888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 688 - 746
Target Start/End: Complemental strand, 20738844 - 20738786
Alignment:
| Q |
688 |
ttcgtgttgttgtgaatcggtttgtatggaggggtttgaaaaattgttggattggttgt |
746 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
20738844 |
ttcgtgttcttgagaatcggtttgtatggaggggtttggaaaattgttggatcggttgt |
20738786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 688 - 746
Target Start/End: Complemental strand, 20747133 - 20747075
Alignment:
| Q |
688 |
ttcgtgttgttgtgaatcggtttgtatggaggggtttgaaaaattgttggattggttgt |
746 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||| ||||||||||||| |||||| |
|
|
| T |
20747133 |
ttcgtgttcttgtgaatcggtttgtattgaggggtttggaaaattgttggatcggttgt |
20747075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 220 - 261
Target Start/End: Original strand, 17663634 - 17663675
Alignment:
| Q |
220 |
ttccggcgcggtggccggtggtgcaccaccgtaccggagttt |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17663634 |
ttccggcgcggtggccggtggtgcaccaccgtgccggagttt |
17663675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 220 - 261
Target Start/End: Original strand, 17682790 - 17682831
Alignment:
| Q |
220 |
ttccggcgcggtggccggtggtgcaccaccgtaccggagttt |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17682790 |
ttccggcgcggtggccggtggtgcaccaccgtgccggagttt |
17682831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0497 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0497
Description:
Target: scaffold0497; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 11890 - 11849
Alignment:
| Q |
220 |
ttccggcgcggtggccggtggtgcaccaccgtaccggagttt |
261 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
11890 |
ttccggcacggtggccggtggtgcaccaccgtgccggagttt |
11849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 43751 - 43795
Alignment:
| Q |
43 |
aagggtgcgtgggtgcatggtaaggccgtacacccacgcgtatgg |
87 |
Q |
| |
|
||||| ||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
43751 |
aagggcgcgagggtgcatggtaagaccgtacacccacgcgtatgg |
43795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 698 - 746
Target Start/End: Original strand, 23513 - 23561
Alignment:
| Q |
698 |
tgtgaatcggtttgtatggaggggtttgaaaaattgttggattggttgt |
746 |
Q |
| |
|
||||| || ||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
23513 |
tgtgagtcagtttgtatggaggggtttggaaaattgttggatcggttgt |
23561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0703 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0703
Description:
Target: scaffold0703; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 261
Target Start/End: Original strand, 6803 - 6844
Alignment:
| Q |
220 |
ttccggcgcggtggccggtggtgcaccaccgtaccggagttt |
261 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
6803 |
ttccggcaaggtggccggtggtgcaccaccgtgccggagttt |
6844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 24536 - 24495
Alignment:
| Q |
221 |
tccggcgcggtggccggtggt-gcaccaccgtaccggagttt |
261 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
24536 |
tccggcgcggtggccggtggtggcaccaccgcaccggagttt |
24495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 261
Target Start/End: Original strand, 47920 - 47961
Alignment:
| Q |
220 |
ttccggcgcggtggccggtggtgcaccaccgtaccggagttt |
261 |
Q |
| |
|
||||||| ||||||||| |||||||||||||| ||||||||| |
|
|
| T |
47920 |
ttccggcacggtggccgatggtgcaccaccgtgccggagttt |
47961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University