View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18313_low_35 (Length: 211)
Name: NF18313_low_35
Description: NF18313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18313_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 29037569 - 29037751
Alignment:
| Q |
11 |
cagaacctgtgacaccaccacctatttttagttattgtggaaagaatgaagctcttgacattgtctttcctgattggtcctattggggttggtaagtctc |
110 |
Q |
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| T |
29037569 |
cagaagctgtgacaccaccacctatttttagttattgtggaaagaatgaagctcttgacattgtctttcctgattggtcctattggggttggtaagtctc |
29037668 |
T |
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| Q |
111 |
ctatattaaattactacttattaatgtggatttttggaatgttaataagtttaacaaggtggtatacacgattttgttgaagc |
193 |
Q |
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| T |
29037669 |
ctatattaaattactacttattaatgtggatttttggaatgttaataagtttaacaaggtgctatacacgattttgttgaagc |
29037751 |
T |
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Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 29017711 - 29017803
Alignment:
| Q |
17 |
ctgtgacaccaccacctatttttagttattgtggaaagaatgaagctcttgacattgtctttcctgattggtcctattggggttggtaagtct |
109 |
Q |
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| T |
29017711 |
ctgtgacactaccacctatttttagttattgtggacaaaatgatgctcttgatattgtctttcctgattggtccttttggggttggtaagtct |
29017803 |
T |
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