View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18313_low_36 (Length: 202)
Name: NF18313_low_36
Description: NF18313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18313_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 6e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 4721333 - 4721166
Alignment:
| Q |
18 |
gttctctggtgaggatgactgctattgcggtggttcgcagtgctaagcagcttccgtagtagaggagaattgtgcaccctcaagtctgtatgtgcgagag |
117 |
Q |
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| T |
4721333 |
gttctctggtgaggatgactgctattgcagtggttcacagtgctaagcagcttcagtagtagaggagaattgtgcaccctcaagtctgtatgtgcgagag |
4721234 |
T |
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| Q |
118 |
gtggattgtgtgcaaaatatgggtgaatgagattgtaccttgatcatgatgctgagtcacacttatat |
185 |
Q |
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| T |
4721233 |
gtggattgtgtgcaaaaaatgggtgaatgagattgtactttgatcatgatgttgagtcacacttatat |
4721166 |
T |
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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 10597406 - 10597478
Alignment:
| Q |
113 |
gagaggtggattgtgtgcaaaatatgggtgaatgagattgtaccttgatcatgatgctgagtcacacttatat |
185 |
Q |
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| T |
10597406 |
gagaggtggattgtgtgcgaaatttgggtgaatgaaagtgtaccttgagcgtgacgctgagtcacgcttatat |
10597478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 21923668 - 21923728
Alignment:
| Q |
97 |
tcaagtctgtatgtgcgagaggtggattgtgtgcaaaatatgggtgaatgagattgtacctt |
158 |
Q |
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| T |
21923668 |
tcaagtcggtatatgaaagaggtggattgtttgcaaaa-atgggtgaatcagattgtacctt |
21923728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 5678075 - 5678015
Alignment:
| Q |
118 |
gtggattgtgtgcaaaata-tgggtgaatgagattgtaccttgatcatgatgctgagtcac |
177 |
Q |
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| T |
5678075 |
gtggattgtgtgcaaaaaaattggtgaatgagattgtaccttgactgtgacgctgagtcac |
5678015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 5703127 - 5703067
Alignment:
| Q |
118 |
gtggattgtgtgcaaaata-tgggtgaatgagattgtaccttgatcatgatgctgagtcac |
177 |
Q |
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| T |
5703127 |
gtggattgtgtgcaaaaaaattggtgaatgagattgtaccttgactgtgacgctgagtcac |
5703067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 185
Target Start/End: Complemental strand, 30808676 - 30808587
Alignment:
| Q |
96 |
ctcaagtctgtatgtgcgagaggtggattgtgtgcaaaatatgggtgaatgagattgtaccttgatcatgatgctgagtcacacttatat |
185 |
Q |
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| T |
30808676 |
ctcaagtcggtatgtgaaagaggtggattgtgtgtgaaaactgggtgaataaaagtgtatcttgagcgtgatgctgagtcatgcttatat |
30808587 |
T |
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