View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18313_low_6 (Length: 650)

Name: NF18313_low_6
Description: NF18313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18313_low_6
NF18313_low_6
[»] chr1 (13 HSPs)
chr1 (12-635)||(46486880-46487502)
chr1 (194-242)||(35988303-35988351)
chr1 (186-242)||(17349825-17349881)
chr1 (194-242)||(3116649-3116697)
chr1 (194-242)||(23333845-23333893)
chr1 (194-242)||(27544457-27544505)
chr1 (194-242)||(32451749-32451797)
chr1 (194-242)||(47783644-47783692)
chr1 (194-235)||(42915913-42915954)
chr1 (194-243)||(49003353-49003402)
chr1 (194-242)||(32474201-32474249)
chr1 (194-242)||(43822861-43822909)
chr1 (206-242)||(44850032-44850068)
[»] chr5 (9 HSPs)
chr5 (188-257)||(8228846-8228915)
chr5 (198-242)||(18396509-18396553)
chr5 (195-242)||(1309753-1309800)
chr5 (194-257)||(25324246-25324309)
chr5 (212-242)||(11200498-11200528)
chr5 (198-260)||(42551052-42551114)
chr5 (202-242)||(2375641-2375681)
chr5 (194-238)||(10696747-10696791)
chr5 (194-242)||(41520852-41520900)
[»] chr7 (6 HSPs)
chr7 (194-261)||(4958327-4958394)
chr7 (194-242)||(29914392-29914441)
chr7 (194-242)||(31330480-31330528)
chr7 (195-242)||(43302109-43302156)
chr7 (194-242)||(36657879-36657927)
chr7 (194-242)||(46282121-46282169)
[»] chr3 (13 HSPs)
chr3 (186-242)||(37103997-37104053)
chr3 (194-242)||(35539675-35539723)
chr3 (13-57)||(42955734-42955778)
chr3 (202-242)||(55272863-55272903)
chr3 (203-242)||(40242175-40242214)
chr3 (199-242)||(45603425-45603468)
chr3 (203-242)||(48085628-48085667)
chr3 (202-262)||(3973230-3973290)
chr3 (202-262)||(3993814-3993874)
chr3 (202-262)||(3996586-3996646)
chr3 (202-262)||(4010125-4010185)
chr3 (192-260)||(13768526-13768594)
chr3 (202-242)||(52393735-52393775)
[»] chr8 (10 HSPs)
chr8 (194-260)||(14426093-14426159)
chr8 (191-242)||(38937875-38937926)
chr8 (194-260)||(5535766-5535832)
chr8 (194-259)||(1155110-1155175)
chr8 (194-242)||(9604492-9604540)
chr8 (194-242)||(28557332-28557380)
chr8 (202-242)||(29811519-29811559)
chr8 (194-238)||(30788630-30788674)
chr8 (194-242)||(31226460-31226508)
chr8 (194-242)||(35973376-35973424)
[»] chr2 (11 HSPs)
chr2 (196-242)||(8798688-8798734)
chr2 (194-260)||(16117884-16117950)
chr2 (194-260)||(26312556-26312622)
chr2 (191-242)||(14772916-14772967)
chr2 (195-238)||(37648283-37648326)
chr2 (188-242)||(15269276-15269330)
chr2 (195-261)||(23394264-23394330)
chr2 (195-243)||(65382-65430)
chr2 (194-242)||(11922029-11922077)
chr2 (194-242)||(34375133-34375181)
chr2 (194-242)||(37347827-37347875)
[»] chr4 (8 HSPs)
chr4 (201-242)||(29857109-29857150)
chr4 (194-242)||(42426881-42426929)
chr4 (194-260)||(10180586-10180652)
chr4 (195-240)||(8678779-8678824)
chr4 (201-242)||(37189063-37189104)
chr4 (194-242)||(23359187-23359235)
chr4 (198-242)||(35308975-35309019)
chr4 (194-242)||(52199888-52199936)
[»] chr6 (3 HSPs)
chr6 (194-242)||(7693913-7693961)
chr6 (194-242)||(32658416-32658464)
chr6 (194-235)||(32977370-32977411)


Alignment Details
Target: chr1 (Bit Score: 580; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 12 - 635
Target Start/End: Original strand, 46486880 - 46487502
Alignment:
Q  12 aagaaaaacaaaaatggatggattgaatattttaatcacaaaattagtttctctcgatctctcttaaatgaaagtatttgagaggatccaaactcaacta 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  46486880 aagaaaaacaaaaatggatggattgaatattttaatcacaaaattagtttctctcgatctctcttaaatgaaggtatttgagaggatccaaactcaacta 46486979  T
Q  112 ttattaggtaatcatagagttattaattgatgatataaaattattggtggaattcatttgaaactttatttagaggtgatgtgttggagggattgagtgt 211  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46486980 ttagtaggtaatcatagagttattaattgatgatataaaattattggtggaattcatttgaaactttatttagaggtgatgtgttggagggattgagtgt 46487079  T
Q  212 ttattaggtattattattaaaaaattataaaggactgttttgtacacgtaaaactcacttatgtcgtcaaaaatgggtatctcctatttggatgctctta 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  46487080 ttattaggtattattattaaaaaattataaaggactgttttgtacatgtaaaactcacttatgtcgtcaaaaatgggtatctcctatttggatgcgctta 46487179  T
Q  312 tatggctagcaaaagcttccacccaaactcaacaaatgtgttgactatgaagcggtaacaccgacaaaaaacccttgacaccattaataatttgaaaagg 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  46487180 tatggctagcaaaagcttccacccaaactcaacaaatgtgttgactatgaagcggtaacaccgacaagaaacccttgacaccattaataatttgaaaagg 46487279  T
Q  412 ttgtatatttaaatgcatgtcggtgtaaacggacatcaaacacaccttcaatttaaaatgtcaggattatacggttagccaatcaaaatgtagccttaag 511  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  46487280 ttgtatatttaaatgcatgtcggtgtaaacgaacatcaaacacaccttcaatttgaaatgtcagggttatacggttagccaatcaaaatgtagccttaag 46487379  T
Q  512 aaacacaagagattaaagtcagcttccatgcatgcatattcttaggtatgtatgtaacaaaagaaaatacagtcaccatgctaaatcattaatcaatgaa 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46487380 aaacacaagagattaaagtcagcttccatgcatgcatattcttaggtatgtatgtaacaaaagaaaatacagtcacc-tgctaaatcattaatcaatgaa 46487478  T
Q  612 gcaaactagaagaagtcagaaatg 635  Q
    ||||||||||||||||||| ||||    
T  46487479 gcaaactagaagaagtcaggaatg 46487502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 35988303 - 35988351
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  35988303 gttggagggattgagtgttaattaggtaatattattaaaaaattataaa 35988351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 17349881 - 17349825
Alignment:
Q  186 ggtgatgtgttggagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    |||| ||||||||||| |||||||| ||||||||||||  |||||||||||||||||    
T  17349881 ggtgctgtgttggaggaattgagtgattattaggtattgatattaaaaaattataaa 17349825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 3116649 - 3116697
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    |||||||| |||| ||| |||||| ||||||||||||||||||||||||    
T  3116649 gttggaggaattgcgtgcttattaagtattattattaaaaaattataaa 3116697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 23333845 - 23333893
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    ||||||| ||||||||| |||||| ||| ||||||||||||||||||||    
T  23333845 gttggagtgattgagtgcttattaagtactattattaaaaaattataaa 23333893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 27544457 - 27544505
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    ||||||||||||||||| ||||||| |  ||||||||||||||||||||    
T  27544457 gttggagggattgagtgcttattagatgctattattaaaaaattataaa 27544505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 32451797 - 32451749
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    ||||||| |||||| || ||||||||||||| |||||||||||||||||    
T  32451797 gttggagtgattgaatgcttattaggtattactattaaaaaattataaa 32451749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 47783692 - 47783644
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    ||||||| ||||||||||||||||  || ||||||||||||||||||||    
T  47783692 gttggagtgattgagtgtttattaaatactattattaaaaaattataaa 47783644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 42915954 - 42915913
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaa 235  Q
    |||||||| |||||||||||||||| ||||| ||||||||||    
T  42915954 gttggaggaattgagtgtttattagatattactattaaaaaa 42915913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 49003402 - 49003353
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaag 243  Q
    ||||||| |||||| |  ||||||||||||| ||||||||||||||||||    
T  49003402 gttggagagattgaatacttattaggtattactattaaaaaattataaag 49003353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 32474201 - 32474249
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    |||||||| |||||||| ||||||||||||   ||||||||||||||||    
T  32474201 gttggaggaattgagtgcttattaggtattgacattaaaaaattataaa 32474249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 43822861 - 43822909
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    |||||||| |||||||| ||||||| || || |||||||||||||||||    
T  43822861 gttggaggaattgagtgcttattagatactactattaaaaaattataaa 43822909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 44850032 - 44850068
Alignment:
Q  206 gagtgtttattaggtattattattaaaaaattataaa 242  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  44850032 gagtgcttattaggtattgttattaaaaaattataaa 44850068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 257
Target Start/End: Original strand, 8228846 - 8228915
Alignment:
Q  188 tgatgtgttggagggattgagtgtttattaggtattattattaaaaaattataaaggactgttttgtaca 257  Q
    |||||||||||||||||||||| |||||||| || |||| ||||||||||||||| || || ||||||||    
T  8228846 tgatgtgttggagggattgagtatttattagatactattgttaaaaaattataaatgattggtttgtaca 8228915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 18396553 - 18396509
Alignment:
Q  198 gagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    |||| ||||||| ||||||||||| ||||||||||||||||||||    
T  18396553 gaggaattgagtatttattaggtactattattaaaaaattataaa 18396509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 1309800 - 1309753
Alignment:
Q  195 ttggagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    |||||| ||||||||| ||||||| || ||||||||||||||||||||    
T  1309800 ttggagtgattgagtgcttattagatactattattaaaaaattataaa 1309753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 257
Target Start/End: Original strand, 25324246 - 25324309
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaaggactgttttgtaca 257  Q
    |||||||  ||||||||| |||||| ||||| ||||||||||||||||| || || ||||||||    
T  25324246 gttggagaaattgagtgtatattagatattactattaaaaaattataaatgaatgatttgtaca 25324309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 212 - 242
Target Start/End: Original strand, 11200498 - 11200528
Alignment:
Q  212 ttattaggtattattattaaaaaattataaa 242  Q
    |||||||||||||||||||||||||||||||    
T  11200498 ttattaggtattattattaaaaaattataaa 11200528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 198 - 260
Target Start/End: Complemental strand, 42551114 - 42551052
Alignment:
Q  198 gagggattgagtgtttattaggtattattattaaaaaattataaaggactgttttgtacacgt 260  Q
    |||||||||| || |||||| ||| |||||||||||||||||||| || || | |||||||||    
T  42551114 gagggattgattgcttattatgtactattattaaaaaattataaatgaatgatgtgtacacgt 42551052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 2375641 - 2375681
Alignment:
Q  202 gattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    |||||| ||||||||||||| || |||||||||||||||||    
T  2375641 gattgaatgtttattaggtactactattaaaaaattataaa 2375681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 10696747 - 10696791
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaatta 238  Q
    |||||||||||||| ||||||||||| |||| | |||||||||||    
T  10696747 gttggagggattgaatgtttattagggattactgttaaaaaatta 10696791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 41520900 - 41520852
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    ||||||||||||||||  ||||||||||  | |||||||||||||||||    
T  41520900 gttggagggattgagttcttattaggtaccactattaaaaaattataaa 41520852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 4958327 - 4958394
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaaggactgttttgtacacgta 261  Q
    ||||||||||||||||||||||||| || || ||||||||||||||||| || || | ||||||||||    
T  4958327 gttggagggattgagtgtttattagatactactattaaaaaattataaatgaatgatgtgtacacgta 4958394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 29914441 - 29914392
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattatta-aaaaattataaa 242  Q
    |||||||||||| |||||||||||||||||| ||||| ||||||||||||    
T  29914441 gttggagggattaagtgtttattaggtattactattataaaaattataaa 29914392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 31330480 - 31330528
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    ||||||||||||||||| |||||||||| ||  ||||||||||||||||    
T  31330480 gttggagggattgagtgcttattaggtactaccattaaaaaattataaa 31330528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 43302156 - 43302109
Alignment:
Q  195 ttggagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    |||||| |||||||| ||||||||||| || |||||||||||||||||    
T  43302156 ttggagtgattgagtatttattaggtactactattaaaaaattataaa 43302109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 36657927 - 36657879
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    ||||||| ||||||||| ||||||| || || |||||||||||||||||    
T  36657927 gttggagtgattgagtgcttattagatagtactattaaaaaattataaa 36657879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 46282169 - 46282121
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    |||||||||||  ||||||||||||||||   |||||||||||||||||    
T  46282169 gttggagggatctagtgtttattaggtatcgctattaaaaaattataaa 46282121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 37104053 - 37103997
Alignment:
Q  186 ggtgatgtgttggagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    |||| ||||||||||| |||||||| |||||||||||||  ||||||||||||||||    
T  37104053 ggtgttgtgttggaggaattgagtgcttattaggtattaacattaaaaaattataaa 37103997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 35539675 - 35539723
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    ||||||| ||| |||||||||||||||| || |||||||||||||||||    
T  35539675 gttggagtgatcgagtgtttattaggtactactattaaaaaattataaa 35539723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 42955778 - 42955734
Alignment:
Q  13 agaaaaacaaaaatggatggattgaatattttaatcacaaaatta 57  Q
    ||||||||| |||| ||||||||||||| ||||||||||||||||    
T  42955778 agaaaaacacaaattgatggattgaatagtttaatcacaaaatta 42955734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 55272863 - 55272903
Alignment:
Q  202 gattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  55272863 gattgagtgtttattatgtactattattaaaaaattataaa 55272903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 40242214 - 40242175
Alignment:
Q  203 attgagtgtttattaggtattattattaaaaaattataaa 242  Q
    |||||||| ||||||||||||| |||||||||||||||||    
T  40242214 attgagtgcttattaggtattactattaaaaaattataaa 40242175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 242
Target Start/End: Complemental strand, 45603468 - 45603425
Alignment:
Q  199 agggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    ||||||||||||||||||| ||| |||||||| |||||||||||    
T  45603468 agggattgagtgtttattaagtactattattataaaattataaa 45603425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 48085628 - 48085667
Alignment:
Q  203 attgagtgtttattaggtattattattaaaaaattataaa 242  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  48085628 attgagtgtttaataggtattatcattaaaaaattataaa 48085667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 3973290 - 3973230
Alignment:
Q  202 gattgagtgtttattaggtattattattaaaaaattataaaggactgttttgtacacgtaa 262  Q
    ||||||||||||| || |||||| ||||||||| ||||||| || |||  |||||||||||    
T  3973290 gattgagtgtttactaagtattactattaaaaatttataaatgagtgtcgtgtacacgtaa 3973230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 3993814 - 3993874
Alignment:
Q  202 gattgagtgtttattaggtattattattaaaaaattataaaggactgttttgtacacgtaa 262  Q
    ||||||||||||| || |||||| ||||||||| ||||||| || |||  |||||||||||    
T  3993814 gattgagtgtttactaagtattactattaaaaatttataaatgagtgtcatgtacacgtaa 3993874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 3996586 - 3996646
Alignment:
Q  202 gattgagtgtttattaggtattattattaaaaaattataaaggactgttttgtacacgtaa 262  Q
    ||||||||||||| || |||||| ||||||||| ||||||| || |||  |||||||||||    
T  3996586 gattgagtgtttactaagtattactattaaaaatttataaatgagtgtcgtgtacacgtaa 3996646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 4010125 - 4010185
Alignment:
Q  202 gattgagtgtttattaggtattattattaaaaaattataaaggactgttttgtacacgtaa 262  Q
    ||||||||||||| || |||||| ||||||||| ||||||| || |||  |||||||||||    
T  4010125 gattgagtgtttactaagtattactattaaaaatttataaatgagtgtcgtgtacacgtaa 4010185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 13768594 - 13768526
Alignment:
Q  192 gtgttggagggattgagtgtttattaggtattattattaaaaaattataaaggactgttttgtacacgt 260  Q
    ||||| ||||||||||||  |||||| ||| || ||||||||||||||||| || || | |||||||||    
T  13768594 gtgttagagggattgagttcttattaagtactactattaaaaaattataaatgagtgatgtgtacacgt 13768526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 52393735 - 52393775
Alignment:
Q  202 gattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    |||||| |||||||||| |||| ||||||||||||||||||    
T  52393735 gattgaatgtttattagatattgttattaaaaaattataaa 52393775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 14426159 - 14426093
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaaggactgttttgtacacgt 260  Q
    ||||||| ||||||||||||||||||||||   ||||||||||||||||| | || | |||||||||    
T  14426159 gttggagtgattgagtgtttattaggtattgcaattaaaaaattataaagaagtgatgtgtacacgt 14426093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 38937875 - 38937926
Alignment:
Q  191 tgtgttggagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    |||||||||||||||||||  ||||||||| | | |||||||||||||||||    
T  38937875 tgtgttggagggattgagttcttattaggtgtcactattaaaaaattataaa 38937926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 5535832 - 5535766
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaaggactgttttgtacacgt 260  Q
    ||||||| ||||||||| |||| ||||| || ||||||||||||||||| || || | |||||||||    
T  5535832 gttggagtgattgagtgcttataaggtactaatattaaaaaattataaatgagtgatgtgtacacgt 5535766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 259
Target Start/End: Complemental strand, 1155175 - 1155110
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaaggactgttttgtacacg 259  Q
    |||||||||||||| || ||||||| || || ||||||||||||||||| || || | ||||||||    
T  1155175 gttggagggattgaatgcttattagatactactattaaaaaattataaatgagtgatgtgtacacg 1155110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 9604540 - 9604492
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    |||||| |||||||||  ||||||| || ||||||||||||||||||||    
T  9604540 gttggatggattgagttcttattagatactattattaaaaaattataaa 9604492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 28557332 - 28557380
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    |||||||| |||||||  |||||||||| || |||||||||||||||||    
T  28557332 gttggaggaattgagtagttattaggtactactattaaaaaattataaa 28557380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 29811519 - 29811559
Alignment:
Q  202 gattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    ||||||||||||||||  || ||||||||||||||||||||    
T  29811519 gattgagtgtttattatttactattattaaaaaattataaa 29811559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 30788630 - 30788674
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaatta 238  Q
    |||||| ||||| |||||||||||| ||||| |||||||||||||    
T  30788630 gttggaaggattaagtgtttattagatattactattaaaaaatta 30788674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 31226508 - 31226460
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    ||||||| | |||||| ||||||||||| || |||||||||||||||||    
T  31226508 gttggagtgtttgagtatttattaggtactactattaaaaaattataaa 31226460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 35973424 - 35973376
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    |||||| ||||| |||||||||||||||  | |||||||||||||||||    
T  35973424 gttggatggattaagtgtttattaggtacaactattaaaaaattataaa 35973376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 8798734 - 8798688
Alignment:
Q  196 tggagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    |||||||||||| || ||||||| |||||||||||||||||||||||    
T  8798734 tggagggattgactgcttattagatattattattaaaaaattataaa 8798688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 16117950 - 16117884
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaaggactgttttgtacacgt 260  Q
    |||||||| |||||||| ||||||||||||  ||||||||||||||||| || || | |||||||||    
T  16117950 gttggaggaattgagtgcttattaggtattgatattaaaaaattataaatgagtgatatgtacacgt 16117884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 26312556 - 26312622
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaaggactgttttgtacacgt 260  Q
    |||||||| |||||||| |||||||||| || ||||||||||||||||| || || | |||||||||    
T  26312556 gttggaggaattgagtgcttattaggtactactattaaaaaattataaatgagtgatgtgtacacgt 26312622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 14772967 - 14772916
Alignment:
Q  191 tgtgttggagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    ||||||||||| |||||||  |||||||||| |||| |||||||||||||||    
T  14772967 tgtgttggaggaattgagtacttattaggtactattgttaaaaaattataaa 14772916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 37648326 - 37648283
Alignment:
Q  195 ttggagggattgagtgtttattaggtattattattaaaaaatta 238  Q
    |||||||||||||||| |||||||||| ||||| ||||||||||    
T  37648326 ttggagggattgagtgcttattaggtactattactaaaaaatta 37648283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 15269276 - 15269330
Alignment:
Q  188 tgatgtgttggagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    |||||||||||||||||||| |  |||||||| | || |||||||||||||||||    
T  15269276 tgatgtgttggagggattgaatacttattaggcactactattaaaaaattataaa 15269330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 195 - 261
Target Start/End: Complemental strand, 23394330 - 23394264
Alignment:
Q  195 ttggagggattgagtgtttattaggtattattattaaaaaattataaaggactgttttgtacacgta 261  Q
    |||||| ||||||||| ||||| | |||| |||||||||||||||||| || || | ||||||||||    
T  23394330 ttggagcgattgagtgcttatttgatattgttattaaaaaattataaaagaatgatgtgtacacgta 23394264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 65430 - 65382
Alignment:
Q  195 ttggagggattgagtgtttattaggtattattattaaaaaattataaag 243  Q
    ||||||||||| ||||||||||| ||| ||  |||||||||||||||||    
T  65430 ttggagggattaagtgtttattatgtactacaattaaaaaattataaag 65382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 11922029 - 11922077
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    |||||||| |||||||| || ||||||| || |||||||||||||||||    
T  11922029 gttggaggaattgagtgctttttaggtactactattaaaaaattataaa 11922077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 34375133 - 34375181
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    |||||||||||||| |  |||||||||| || |||||||||||||||||    
T  34375133 gttggagggattgaattcttattaggtactactattaaaaaattataaa 34375181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 37347875 - 37347827
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    |||||||||||||| |  ||||||| ||||| |||||||||||||||||    
T  37347875 gttggagggattgaattcttattagatattactattaaaaaattataaa 37347827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 29857150 - 29857109
Alignment:
Q  201 ggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    |||||||||| |||||| ||||||||||||||||||||||||    
T  29857150 ggattgagtgattattatgtattattattaaaaaattataaa 29857109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 42426929 - 42426881
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    |||||||||||||||| |||||||| || || |||||||||||||||||    
T  42426929 gttggagggattgagtttttattagatactactattaaaaaattataaa 42426881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 10180652 - 10180586
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaaggactgttttgtacacgt 260  Q
    |||||||| |||||||  |||||||||| || ||||||||||||||||| || || | |||||||||    
T  10180652 gttggaggcattgagttcttattaggtactactattaaaaaattataaatgagtgatatgtacacgt 10180586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 8678779 - 8678824
Alignment:
Q  195 ttggagggattgagtgtttattaggtattattattaaaaaattata 240  Q
    |||||| |||||||||||| ||||||||||  ||||||||||||||    
T  8678779 ttggagagattgagtgtttgttaggtattaccattaaaaaattata 8678824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 37189104 - 37189063
Alignment:
Q  201 ggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    |||||||||  |||||| ||||||||||||||||||||||||    
T  37189104 ggattgagtaattattatgtattattattaaaaaattataaa 37189063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 23359187 - 23359235
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    ||||||| ||||||||| ||||||| || || |||||||||||||||||    
T  23359187 gttggagtgattgagtgcttattagatactactattaaaaaattataaa 23359235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 35309019 - 35308975
Alignment:
Q  198 gagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    ||||||||||||  ||||||| ||||| |||||||||||||||||    
T  35309019 gagggattgagtacttattagatattactattaaaaaattataaa 35308975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 52199888 - 52199936
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    ||||||| |||||| || |||||||||| || |||||||||||||||||    
T  52199888 gttggagtgattgaatgcttattaggtactactattaaaaaattataaa 52199936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 7693961 - 7693913
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    ||||||||||||||||  |||||||||| ||||| ||||||||||||||    
T  7693961 gttggagggattgagtacttattaggtactattactaaaaaattataaa 7693913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 32658464 - 32658416
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaattataaa 242  Q
    ||||||| |||| ||||||||||||||| || |||||||||||||||||    
T  32658464 gttggagtgatttagtgtttattaggtactactattaaaaaattataaa 32658416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 32977411 - 32977370
Alignment:
Q  194 gttggagggattgagtgtttattaggtattattattaaaaaa 235  Q
    ||||||||||||||||| |||||||||| || ||||||||||    
T  32977411 gttggagggattgagtgcttattaggtactactattaaaaaa 32977370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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