View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18313_low_8 (Length: 542)
Name: NF18313_low_8
Description: NF18313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18313_low_8 |
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| [»] chr4 (3 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 225 - 542
Target Start/End: Original strand, 4720878 - 4721189
Alignment:
| Q |
225 |
aaaaaagaatacgtgaaaatgatcaagacttgcccctatcaacagcagattccatgcacggtacttgcaatttgcaaatgaaagttgttccaaaccaaac |
324 |
Q |
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| T |
4720878 |
aaaaaataatacgtgaaaatgatcaagacttgcccctatcaacaacagattccatgcacggtacttgcaatttgcaaatgaaagttgttccaaaccaaac |
4720977 |
T |
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| Q |
325 |
cggcataaggccaagtgtgaatgaatatcccaatgaagacaaggcacatattcttcaaagaaaagcaccacgaaggtgcacgggaagccctgtgcgtatt |
424 |
Q |
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| T |
4720978 |
cggcataaggccaagtgtgaa----tatcccaatgaagacaaggcacatattcttcaaagaaaagcaccacgaaggtgcacgggaagccctgtgcgtatt |
4721073 |
T |
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| Q |
425 |
gcagtgctggagcgcgtcaggattaatcctagccatcagaatcatctctaaccgctttcaaaacctagaggcagttatcaacatatccccaactatataa |
524 |
Q |
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| T |
4721074 |
gcagtgctggagcgcgtcaggattaatcctagccgtcagaatcatctctagcggctttcaaaacctagaggcagttatcaacata--ctcgactatataa |
4721171 |
T |
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| Q |
525 |
gtgtgactcagcatcatg |
542 |
Q |
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| T |
4721172 |
gtgtgactcaacatcatg |
4721189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 124 - 230
Target Start/End: Original strand, 4720377 - 4720484
Alignment:
| Q |
124 |
tttgatggttaactactgaggga-tatttacatattttactggtgtttttcaacctttattttaagtgtcaacaacaattttccaatcgttatttggtcc |
222 |
Q |
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| T |
4720377 |
tttggtggttaactaccgagggggtatttatgtattttactggtgtttttcaacctttatgttaagtgtcaacaacaattttccaattgttatttggtcc |
4720476 |
T |
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| Q |
223 |
ataaaaaa |
230 |
Q |
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| T |
4720477 |
ataaaaaa |
4720484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 4720264 - 4720306
Alignment:
| Q |
18 |
tccaaaatcgatttgaaagaattgggagaatcggagaagtttt |
60 |
Q |
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| T |
4720264 |
tccaatatcgatttgaaggaattgggagaatcggagaagtttt |
4720306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 22494873 - 22494812
Alignment:
| Q |
145 |
gatatttacatattttactggtgtttttcaacctttattttaagtgtcaacaacaattttcca |
207 |
Q |
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| T |
22494873 |
gatatttacgtattttactggtgtttttcagcc-ttctgttaagtgtcaacaacaattttcca |
22494812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 9428940 - 9428881
Alignment:
| Q |
145 |
gatatttacatattttactggtgtttttcaacctttattttaagtgtcaacaacaattttc |
205 |
Q |
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| T |
9428940 |
gatatttgcgtattttattggtgtttttcaacc-ttatgtgaagtgtcaacaacaattttc |
9428881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 251417 - 251462
Alignment:
| Q |
74 |
aaactgatatgaaaatgatgcttctatttttgtataaaggacgcat |
119 |
Q |
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| T |
251417 |
aaactgatatgaaactgatgcttatgtttatgtataaaggacgcat |
251462 |
T |
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