View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18314_high_10 (Length: 331)
Name: NF18314_high_10
Description: NF18314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18314_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 9 - 316
Target Start/End: Original strand, 6551742 - 6552046
Alignment:
| Q |
9 |
gacatcatcattagtgtgtgtggtgctattccatcgatatatctatcatatagataaattactcctttggcataaagatcaatcacttatgtctgatttt |
108 |
Q |
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| T |
6551742 |
gacatcataattagtgtgtgtggtgctattccatcgatatatc----atatagataaattactcctttggcataagaatcaatcacttatgtctgatttt |
6551837 |
T |
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| Q |
109 |
gaggctattattcgtttagttttattatatgaagttgatgtttctcggtttgttgtggtggttgctagtggcatatccagaattttatagggatgaagaa |
208 |
Q |
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| T |
6551838 |
gaggctattattcgtttagttttattatatgaagttgatgtttcacggtttgttgtggtggttgctagtggcatatccagaattttatagggatgaagaa |
6551937 |
T |
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| Q |
209 |
a-gnnnnnnnttgaaaggttttttagaatttagtgtctgcaaatactccaaagctttggtcaattcatgaatgagatagttgaaaggttttttagaatat |
307 |
Q |
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| T |
6551938 |
ataaaaaaaattgaaaggttttttagaatttagtgtttgcaaatactccaaagctttggtcaattcatgaatgagatagttgaaaggttttttagaatat |
6552037 |
T |
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| Q |
308 |
agtgtgtgt |
316 |
Q |
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||||||||| |
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| T |
6552038 |
agtgtgtgt |
6552046 |
T |
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