View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18314_high_6 (Length: 453)
Name: NF18314_high_6
Description: NF18314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18314_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 64 - 239
Target Start/End: Original strand, 51754989 - 51755164
Alignment:
| Q |
64 |
gagggccatggaacatgaaattggtaaatgaaaaagagaaaatattcaatatatgaggctgattatggacatcatgttgtgtaaaaggaattagccaaat |
163 |
Q |
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| T |
51754989 |
gagggccatggaacatgaaattggtaaatgaaaaagagaaaatattcaatatatgaggctgattatggacatcatgttgtgtaaaaggaattagccaaat |
51755088 |
T |
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| Q |
164 |
cactcccacatcatctccatgcccccacgtggaaaattaaactcttacataataagcaattgagccttataacctt |
239 |
Q |
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| T |
51755089 |
cactcccacatcatccccatgcccccacgtggaaaattaaactcttacataataagcaattgagccttataacctt |
51755164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 275 - 435
Target Start/End: Original strand, 51755266 - 51755426
Alignment:
| Q |
275 |
ggttaacctttaacacctcttttgataaggtaacaaaaagtaaagagatatcgtgaggtataattatactatttactgcaatgaaaatttcatgagattt |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51755266 |
ggttaacctttaacacctcttttgataaggtaacaaaaagtaaagagatatggtgaggtataattatactatttactgcaatgaaaatttcatgagattt |
51755365 |
T |
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| Q |
375 |
ctcaagtcagtaattctgatataaacgcttttatgttccctaaatttgtattttccaaatg |
435 |
Q |
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| T |
51755366 |
ctcaagtcagtaattctgatataaacgcttttatgttccctaaatttgtattttccaaatg |
51755426 |
T |
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