View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18314_high_7 (Length: 421)
Name: NF18314_high_7
Description: NF18314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18314_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 31940062 - 31939656
Alignment:
| Q |
1 |
catttgttcgtgggacctcttctaagtatgtacatatgtacatctattttaggtcatcatattttatgtctattttatctatatcaaagttcttatgtat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31940062 |
catttgttcgtgggacctcttctaagtatgtatatatgtacatctattttaggtcatcatattttatgtctatttcatctatatcaaagttcttatgtat |
31939963 |
T |
|
| Q |
101 |
ctgttgaacacaacaggccatttggtcgactttggtgggacgaaattgtgtctactgttgtaacaagggccgagcctcataatcaggttattgtttgaag |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31939962 |
cttctgaacacaacaggccatttggtcgactttggtgggacgaaattgtgtctactgttgtaacaagggctgagcctcataatcaggttattgtttgaag |
31939863 |
T |
|
| Q |
201 |
ttgtgtacattatattttgtaaaactaatgccacttatgctatcctcccattgcaaaacctctttaaaacaatgttgtatatgaaaaatgttattgacct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||| || |
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| T |
31939862 |
ttgtgtacattatattttgtaaaactaatgccactaatgttatcctcccattgcaaaacctctttaaaacaatgttgtatataagaaatgttattgaact |
31939763 |
T |
|
| Q |
301 |
caggattatcatgttagcattttttcaattaaactcatctgaccatgttctttgtttggacttgttgtgcaagtggcagtacttatttcaattgttttct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31939762 |
caggattatcatgttagcattttttcaattaaactcatctgaccatgttctttgtttggacttgttgtgcaagtggcagtccttatttcaattgttttct |
31939663 |
T |
|
| Q |
401 |
ttttcat |
407 |
Q |
| |
|
||||||| |
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|
| T |
31939662 |
ttttcat |
31939656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 13536296 - 13536033
Alignment:
| Q |
1 |
catttgttcgtgggacctcttctaagtatgtacatatgtacatctattttaggtcatcatattttatgtctattttatctatatcaaagttc--ttatgt |
98 |
Q |
| |
|
|||||||||||||||| || |||||||||||| ||||| |||| | | | |||| |||||||| ||| ||||| | ||||| |||||| |||||| |
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|
| T |
13536296 |
catttgttcgtgggacttcctctaagtatgtatatatgcacat---tatcatgtcaacatattttctgtttatttcctttatattaaagtttgtttatgt |
13536200 |
T |
|
| Q |
99 |
atctgttgaacacaacaggccatttggtcgactttggtgggacgaaattgtgtctactgttgtaacaagggccgagcctcataatcaggttattgtttga |
198 |
Q |
| |
|
|| || || | |||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||| || | |
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|
| T |
13536199 |
atatg---aaaataacaggccatttggccgactttggtgggacgaaattgtgtctactgttgtaacgagagccgaacctcataatcaggttattattag- |
13536104 |
T |
|
| Q |
199 |
agttgtgtacattatattttgtaaaactaatgccacttatgctatcctcccattgcaaaacctctttaaaa |
269 |
Q |
| |
|
|| ||| | |||| |||||||||||||||||||||||||| || |||| |||||||| || ||||||| |
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|
| T |
13536103 |
aggtgttcatattacattttgtaaaactaatgccacttatgtaattgtccctttgcaaaaactgtttaaaa |
13536033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 9390415 - 9390050
Alignment:
| Q |
1 |
catttgttcgtgggacctcttctaagtatgtacatatgtacatctattttaggtcatcatattttatgtctattttatctatatcaaagttcttatgtat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
9390415 |
catttgttcgtgggacctcttctaagtatgtacatatgtacatctattttaggtcatcatattttatgtctattttatctatatcaaagttctcatgtat |
9390316 |
T |
|
| Q |
101 |
ctgttgaacacaacaggccatttggtcgactttggtgggacgaaattgtgtctactgttgtaacaagggccgagcctcataatcaggttattgtttgaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9390315 |
ctgttgaacacaacaggccatttggtcgactttggtgggacgaaattgtgtctactgttgtaacaagggccgagcctcataatcaggttattgtttgaag |
9390216 |
T |
|
| Q |
201 |
ttgtgtacattatattttgtaaaactaatgccacttatgctatcctcccattgcaaaacctctttaaaacaatgttgtatatgaaaaatgttattgacct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9390215 |
ttgtgtacattatattttgtaaaactaatgccacttatgctatcctcccattgcaaaacctctttaaaacaatgttgtatatgaaaaatgttattgacct |
9390116 |
T |
|
| Q |
301 |
caggattatcatgttagcattttttcaattaaactcatctgaccatgttctttgtttggacttgtt |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9390115 |
caggattatcatgttagcattttttcaattaaactcatctgaccatgttctttgtttggacttgtt |
9390050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 1338249 - 1337843
Alignment:
| Q |
1 |
catttgttcgtgggacctcttctaagtatgtacatatgtacatctattttaggtcatcatattttatgtctattttatctatatcaaagttcttatgtat |
100 |
Q |
| |
|
|||||||||| |||||||| |||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
1338249 |
catttgttcgcgggacctcctctaagtatgtatatatgtacatcaattttttgtcatcatattttatgtttatttcatctatatcaaagttcttatgtat |
1338150 |
T |
|
| Q |
101 |
ctgttgaacacaacaggccatttggtcgactttggtgggacgaaattgtgtctactgttgtaacaagggccgagcctcataatcaggttattgtttgaag |
200 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
1338149 |
ctgctgaatacaacaggccatttggtcgactttggtgggacgaaattgtgtccacggttgtaacaagggccgagcctcataatcaggttgttatttgaag |
1338050 |
T |
|
| Q |
201 |
ttgtgtacattatattttgtaaaactaatgccacttatgctatcctcccattgcaaaacctctttaaaacaatgttgtatatgaaaaatgttattgacct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||| |
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|
| T |
1338049 |
ttgtgtacattatattttgtaaaactaatgccacttatgttatcctcccattgcaaaacctctttaaaacaatgttgtatttgagaaatgttatcaacct |
1337950 |
T |
|
| Q |
301 |
caggattatcatgttagcattttttcaattaaactcatctgaccatgttctttgtttggacttgttgtgcaagtggcagtacttatttcaattgttttct |
400 |
Q |
| |
|
||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||| || ||||||| |
|
|
| T |
1337949 |
taggatgagcatgctagcattttttcaattaaactcatctgaccatgttctttgtttggacttgttatataagtggaagtacttatttcgatcgttttct |
1337850 |
T |
|
| Q |
401 |
ttttcat |
407 |
Q |
| |
|
||||||| |
|
|
| T |
1337849 |
ttttcat |
1337843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 2 - 276
Target Start/End: Complemental strand, 5640136 - 5639862
Alignment:
| Q |
2 |
atttgttcgtgggacctcttctaagtatgtacatatgtacatctattttaggtcatcatattttatgtctattttatctatatcaaagttcttatgtatc |
101 |
Q |
| |
|
||||||||| ||||| || |||||||||||| || || | || |||| | ||||||||||||||||| ||||| |||||||||| ||||||||| |||| |
|
|
| T |
5640136 |
atttgttcgggggacttcctctaagtatgtatatttgcatatgaatttaatgtcatcatattttatgtttatttcatctatatcatagttcttatttatc |
5640037 |
T |
|
| Q |
102 |
tgttgaacacaacaggccatttggtcgactttggtgggacgaaattgtgtctactgttgtaacaagggccgagcctcataatcaggttattgtttgaagt |
201 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || |||| || ||||| || ||||||||| || |||| |
|
|
| T |
5640036 |
tgctgaacacaacaggccatttggtcgactttggtgggacgaaattgtgtccacagttgtgacccgggcggaacctcacaaccaggttatttttctaagt |
5639937 |
T |
|
| Q |
202 |
tgtgtacattatattttgtaaaactaatgccacttatgctatcctcccattgcaaaacctctttaaaacaatgtt |
276 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
5639936 |
tgtgtacattatattttgtaaatccaatgccacttatgctatcctcaaattgcaaaacctctttaaagcaatgtt |
5639862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 302 - 363
Target Start/End: Complemental strand, 5639857 - 5639796
Alignment:
| Q |
302 |
aggattatcatgttagcattttttcaattaaactcatctgaccatgttctttgtttggactt |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||| |||| |
|
|
| T |
5639857 |
aggattatcatgttagcattttttcaattaaactcatctggccatgttccttgcttgaactt |
5639796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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