View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18314_high_8 (Length: 407)

Name: NF18314_high_8
Description: NF18314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18314_high_8
NF18314_high_8
[»] chr2 (7 HSPs)
chr2 (156-347)||(17152472-17152664)
chr2 (22-88)||(17152727-17152793)
chr2 (344-397)||(17152330-17152383)
chr2 (348-389)||(18818886-18818927)
chr2 (344-381)||(21505024-21505061)
chr2 (344-397)||(31262173-31262226)
chr2 (344-389)||(31274140-31274185)
[»] chr7 (5 HSPs)
chr7 (187-293)||(5636599-5636706)
chr7 (345-395)||(22532531-22532581)
chr7 (344-397)||(14649672-14649725)
chr7 (351-397)||(12358655-12358701)
chr7 (348-397)||(29544696-29544745)
[»] chr4 (2 HSPs)
chr4 (348-384)||(5906652-5906688)
chr4 (344-397)||(46647371-46647424)
[»] chr8 (1 HSPs)
chr8 (348-397)||(28291990-28292039)
[»] chr6 (6 HSPs)
chr6 (348-397)||(26499736-26499785)
chr6 (345-397)||(16439634-16439686)
chr6 (226-283)||(13830558-13830616)
chr6 (348-402)||(33638257-33638311)
chr6 (348-397)||(33638394-33638443)
chr6 (344-396)||(23418995-23419047)
[»] chr5 (7 HSPs)
chr5 (344-397)||(11997778-11997831)
chr5 (344-397)||(17695348-17695401)
chr5 (348-396)||(19763775-19763823)
chr5 (347-381)||(16634239-16634273)
chr5 (348-397)||(7742759-7742808)
chr5 (348-397)||(24130804-24130853)
chr5 (348-397)||(30072292-30072341)
[»] chr3 (2 HSPs)
chr3 (348-397)||(19219100-19219149)
chr3 (344-397)||(25188934-25188987)
[»] chr1 (10 HSPs)
chr1 (344-397)||(26102233-26102286)
chr1 (348-381)||(30675676-30675709)
chr1 (344-396)||(13807603-13807655)
chr1 (345-397)||(27461067-27461119)
chr1 (345-397)||(31313728-31313780)
chr1 (348-381)||(11769883-11769916)
chr1 (344-397)||(15416858-15416911)
chr1 (348-381)||(25494378-25494411)
chr1 (344-377)||(34935221-34935254)
chr1 (349-381)||(18300893-18300925)
[»] scaffold0386 (1 HSPs)
scaffold0386 (357-394)||(11697-11734)
[»] scaffold0171 (1 HSPs)
scaffold0171 (348-397)||(21574-21623)


Alignment Details
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 156 - 347
Target Start/End: Complemental strand, 17152664 - 17152472
Alignment:
Q  156 tccctttgagattcgatgtggggataaaatggtgtgtaagagtctctgtttatagttcatcgttacttaatgattaatagatgagagctgagctttttcc 255  Q
    |||||||||||||| ||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17152664 tccctttgagattcaatgtggggataaaatagtgtgtaagggtctctatttatagttcatcgttacttaatgattaatagatgagaactgagctttttcc 17152565  T
Q  256 tctgatccaacttg-aaaacaagctaaaactacattttcctcgtctcttgcataggcgcgtacatactgagatgcaggggcgcatggcgcaac 347  Q
    |||||||||||||| |||||||||||||||||||||||||  |||||||||||||| ||||||||||||||| |||||||||||||| |||||    
T  17152564 tctgatccaacttgaaaaacaagctaaaactacattttcccggtctcttgcataggggcgtacatactgagacgcaggggcgcatggggcaac 17152472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 17152793 - 17152727
Alignment:
Q  22 ttgtctttgtattatcagtcacaatgagtgatacggagtatttcataactcaaatcgtcctagaatg 88  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  17152793 ttgtctttgtattatcagtcacaatgagtgatatggagtatttcataaatcaaatcgtcctagaatg 17152727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 344 - 397
Target Start/End: Complemental strand, 17152383 - 17152330
Alignment:
Q  344 caacttgtattatcttcaaaaaccttctaagaaccattaatattcattcttcat 397  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17152383 caacttgtattatcttcaaaaaccttctaagaaccattcatattcattcttcat 17152330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 389
Target Start/End: Complemental strand, 18818927 - 18818886
Alignment:
Q  348 ttgtattatcttcaaaaaccttctaagaaccattaatattca 389  Q
    ||||||| |||||||| |||||||||||||||||||| ||||    
T  18818927 ttgtattgtcttcaaagaccttctaagaaccattaatcttca 18818886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 381
Target Start/End: Original strand, 21505024 - 21505061
Alignment:
Q  344 caacttgtattatcttcaaaaaccttctaagaaccatt 381  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  21505024 caacttgtattgtcttcaaaaaccttctcagaaccatt 21505061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 397
Target Start/End: Complemental strand, 31262226 - 31262173
Alignment:
Q  344 caacttgtattatcttcaaaaaccttctaagaaccattaatattcattcttcat 397  Q
    |||||| |||| |||||||| |||| ||||||||||||||| |||| |||||||    
T  31262226 caacttatattgtcttcaaagacctactaagaaccattaatcttcaatcttcat 31262173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 389
Target Start/End: Complemental strand, 31274185 - 31274140
Alignment:
Q  344 caacttgtattatcttcaaaaaccttctaagaaccattaatattca 389  Q
    |||||| |||| |||||||| |||||||||||||||||||| ||||    
T  31274185 caacttatattgtcttcaaagaccttctaagaaccattaatcttca 31274140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 187 - 293
Target Start/End: Complemental strand, 5636706 - 5636599
Alignment:
Q  187 gtgtgtaagagtctctgtttatagttcatcgttacttaatgattaatagatgagagctgagctttttcctctgatccaacttg-aaaacaagctaaaact 285  Q
    ||||| ||| |||||| |||||||| |||| ||||||| ||||||| ||||||   | |||||||||||||||||||| |||| ||||||| ||||||||    
T  5636706 gtgtgcaagggtctctatttatagtgcatcattacttagtgattaagagatgaagaccgagctttttcctctgatccagcttgaaaaacaaactaaaact 5636607  T
Q  286 acattttc 293  Q
     |||||||    
T  5636606 gcattttc 5636599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 345 - 395
Target Start/End: Original strand, 22532531 - 22532581
Alignment:
Q  345 aacttgtattatcttcaaaaaccttctaagaaccattaatattcattcttc 395  Q
    |||||| ||| ||||||||||| |||||||||||||| |||||||||||||    
T  22532531 aacttggattgtcttcaaaaactttctaagaaccattgatattcattcttc 22532581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 397
Target Start/End: Complemental strand, 14649725 - 14649672
Alignment:
Q  344 caacttgtattatcttcaaaaaccttctaagaaccattaatattcattcttcat 397  Q
    ||||||||||| |||||||||||||||||| ||||||| || |||||| |||||    
T  14649725 caacttgtattgtcttcaaaaaccttctaataaccattgatcttcattattcat 14649672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 397
Target Start/End: Original strand, 12358655 - 12358701
Alignment:
Q  351 tattatcttcaaaaaccttctaagaaccattaatattcattcttcat 397  Q
    |||| |||||||||||||||||||||||||| || |||| |||||||    
T  12358655 tattgtcttcaaaaaccttctaagaaccattgatcttcaatcttcat 12358701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 397
Target Start/End: Complemental strand, 29544745 - 29544696
Alignment:
Q  348 ttgtattatcttcaaaaaccttctaagaaccattaatattcattcttcat 397  Q
    ||||||| ||||||||||||||||||||| |||| || |||| |||||||    
T  29544745 ttgtattgtcttcaaaaaccttctaagaatcattgatcttcaatcttcat 29544696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 348 - 384
Target Start/End: Original strand, 5906652 - 5906688
Alignment:
Q  348 ttgtattatcttcaaaaaccttctaagaaccattaat 384  Q
    |||||||||||||||||||||||||||||||||||||    
T  5906652 ttgtattatcttcaaaaaccttctaagaaccattaat 5906688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 397
Target Start/End: Complemental strand, 46647424 - 46647371
Alignment:
Q  344 caacttgtattatcttcaaaaaccttctaagaaccattaatattcattcttcat 397  Q
    |||||||||||||||| ||||||||| ||||||||||| || |||||| |||||    
T  46647424 caacttgtattatctttaaaaaccttttaagaaccattgatcttcatttttcat 46647371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 397
Target Start/End: Original strand, 28291990 - 28292039
Alignment:
Q  348 ttgtattatcttcaaaaaccttctaagaaccattaatattcattcttcat 397  Q
    ||||||| |||||||| |||||||||||||||||||| |||| |||||||    
T  28291990 ttgtattgtcttcaaagaccttctaagaaccattaatcttcaatcttcat 28292039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 397
Target Start/End: Original strand, 26499736 - 26499785
Alignment:
Q  348 ttgtattatcttcaaaaaccttctaagaaccattaatattcattcttcat 397  Q
    ||||||| |||||||||||||||||||||||||| || |||| |||||||    
T  26499736 ttgtattgtcttcaaaaaccttctaagaaccattgatcttcaatcttcat 26499785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 16439686 - 16439634
Alignment:
Q  345 aacttgtattatcttcaaaaaccttctaagaaccattaatattcattcttcat 397  Q
    |||||||||| ||||||||| | |||||||||||||| || ||||||||||||    
T  16439686 aacttgtattttcttcaaaaccattctaagaaccattgatcttcattcttcat 16439634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 283
Target Start/End: Original strand, 13830558 - 13830616
Alignment:
Q  226 tgattaatagatgagagctgagctttttcctctgatccaactt-gaaaacaagctaaaa 283  Q
    |||||||  ||| ||| ||||||||||||||| |||||||||| |||||||||||||||    
T  13830558 tgattaagggattagaactgagctttttcctccgatccaacttggaaaacaagctaaaa 13830616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 402
Target Start/End: Complemental strand, 33638311 - 33638257
Alignment:
Q  348 ttgtattatcttcaaaaaccttctaagaaccattaatattcattcttcatctcac 402  Q
    |||||||||||||||| ||||| ||||||||||| || |||| ||||||| ||||    
T  33638311 ttgtattatcttcaaagaccttataagaaccattgatcttcaatcttcatatcac 33638257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 397
Target Start/End: Original strand, 33638394 - 33638443
Alignment:
Q  348 ttgtattatcttcaaaaaccttctaagaaccattaatattcattcttcat 397  Q
    |||||||||||||||| ||||| ||||||||||| || |||| |||||||    
T  33638394 ttgtattatcttcaaagaccttataagaaccattgatcttcaatcttcat 33638443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 23418995 - 23419047
Alignment:
Q  344 caacttgtattatcttcaaaaaccttctaagaaccattaatattcattcttca 396  Q
    |||||||||||  |||||||||||||||| | | |||| ||||||||||||||    
T  23418995 caacttgtattgacttcaaaaaccttctacgtaacattgatattcattcttca 23419047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 397
Target Start/End: Original strand, 11997778 - 11997831
Alignment:
Q  344 caacttgtattatcttcaaaaaccttctaagaaccattaatattcattcttcat 397  Q
    |||||||||||||||| ||||||||||||| || |||| || ||||||||||||    
T  11997778 caacttgtattatctttaaaaaccttctaaaaatcattgatcttcattcttcat 11997831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 397
Target Start/End: Original strand, 17695348 - 17695401
Alignment:
Q  344 caacttgtattatcttcaaaaaccttctaagaaccattaatattcattcttcat 397  Q
    ||||||||||| |||||||||||||||||| ||||||| || |||||| |||||    
T  17695348 caacttgtattgtcttcaaaaaccttctaataaccattgatcttcattattcat 17695401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 19763775 - 19763823
Alignment:
Q  348 ttgtattatcttcaaaaaccttctaagaaccattaatattcattcttca 396  Q
    ||||||||||||||||||||||||||||||| || || |||| ||||||    
T  19763775 ttgtattatcttcaaaaaccttctaagaacccttgatcttcaatcttca 19763823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 381
Target Start/End: Complemental strand, 16634273 - 16634239
Alignment:
Q  347 cttgtattatcttcaaaaaccttctaagaaccatt 381  Q
    |||||||| ||||||||||||||||||||||||||    
T  16634273 cttgtattttcttcaaaaaccttctaagaaccatt 16634239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 397
Target Start/End: Original strand, 7742759 - 7742808
Alignment:
Q  348 ttgtattatcttcaaaaaccttctaagaaccattaatattcattcttcat 397  Q
    ||||||| |||||||| ||||||||||||||||| || |||| |||||||    
T  7742759 ttgtattgtcttcaaagaccttctaagaaccattgatcttcagtcttcat 7742808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 397
Target Start/End: Complemental strand, 24130853 - 24130804
Alignment:
Q  348 ttgtattatcttcaaaaaccttctaagaaccattaatattcattcttcat 397  Q
    ||||||| | |||||||||||||||||| ||||| ||||| |||||||||    
T  24130853 ttgtattgtattcaaaaaccttctaagatccattgatatttattcttcat 24130804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 397
Target Start/End: Complemental strand, 30072341 - 30072292
Alignment:
Q  348 ttgtattatcttcaaaaaccttctaagaaccattaatattcattcttcat 397  Q
    ||||||| |||| ||||||||| |||||||||||||| |||| |||||||    
T  30072341 ttgtattgtctttaaaaaccttttaagaaccattaatcttcaatcttcat 30072292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 397
Target Start/End: Original strand, 19219100 - 19219149
Alignment:
Q  348 ttgtattatcttcaaaaaccttctaagaaccattaatattcattcttcat 397  Q
    ||||||| |||||||||||||||||||||||||| || |||| |||||||    
T  19219100 ttgtattgtcttcaaaaaccttctaagaaccattgatcttcaatcttcat 19219149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 397
Target Start/End: Complemental strand, 25188987 - 25188934
Alignment:
Q  344 caacttgtattatcttcaaaaaccttctaagaaccattaatattcattcttcat 397  Q
    ||||||||||| |||| ||||||||  ||||||||||| |||||||||||||||    
T  25188987 caacttgtattgtcttaaaaaacctcttaagaaccattgatattcattcttcat 25188934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 397
Target Start/End: Complemental strand, 26102286 - 26102233
Alignment:
Q  344 caacttgtattatcttcaaaaaccttctaagaaccattaatattcattcttcat 397  Q
    ||||||||||| |||||||||||||||||| || |||| || ||||||||||||    
T  26102286 caacttgtattgtcttcaaaaaccttctaaaaatcattgatcttcattcttcat 26102233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 381
Target Start/End: Complemental strand, 30675709 - 30675676
Alignment:
Q  348 ttgtattatcttcaaaaaccttctaagaaccatt 381  Q
    ||||||||||||||||||||||||||||||||||    
T  30675709 ttgtattatcttcaaaaaccttctaagaaccatt 30675676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 13807603 - 13807655
Alignment:
Q  344 caacttgtattatcttcaaaaaccttctaagaaccattaatattcattcttca 396  Q
    ||||||||||| |||||||||| |||||||||| ||| ||| |||||||||||    
T  13807603 caacttgtattttcttcaaaaatcttctaagaagcatcaatcttcattcttca 13807655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 27461067 - 27461119
Alignment:
Q  345 aacttgtattatcttcaaaaaccttctaagaaccattaatattcattcttcat 397  Q
    |||||||||| |||||||||||||| ||||||||||| || ||||| ||||||    
T  27461067 aacttgtattgtcttcaaaaaccttttaagaaccattgatcttcatacttcat 27461119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 31313780 - 31313728
Alignment:
Q  345 aacttgtattatcttcaaaaaccttctaagaaccattaatattcattcttcat 397  Q
    |||||||||| |||||||||||||| |||||| |||| || ||||||||||||    
T  31313780 aacttgtattgtcttcaaaaaccttataagaatcattgatcttcattcttcat 31313728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 381
Target Start/End: Original strand, 11769883 - 11769916
Alignment:
Q  348 ttgtattatcttcaaaaaccttctaagaaccatt 381  Q
    ||||||| ||||||||||||||||||||||||||    
T  11769883 ttgtattgtcttcaaaaaccttctaagaaccatt 11769916  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 397
Target Start/End: Original strand, 15416858 - 15416911
Alignment:
Q  344 caacttgtattatcttcaaaaaccttctaagaaccattaatattcattcttcat 397  Q
    ||||||| ||| |||| ||||||||| ||||||||||| || ||||||||||||    
T  15416858 caacttgcattgtctttaaaaaccttataagaaccattgatcttcattcttcat 15416911  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 381
Target Start/End: Original strand, 25494378 - 25494411
Alignment:
Q  348 ttgtattatcttcaaaaaccttctaagaaccatt 381  Q
    ||||||| ||||||||||||||||||||||||||    
T  25494378 ttgtattgtcttcaaaaaccttctaagaaccatt 25494411  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 34935221 - 34935254
Alignment:
Q  344 caacttgtattatcttcaaaaaccttctaagaac 377  Q
    |||||||||||||||||||||||||| |||||||    
T  34935221 caacttgtattatcttcaaaaaccttataagaac 34935254  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 18300893 - 18300925
Alignment:
Q  349 tgtattatcttcaaaaaccttctaagaaccatt 381  Q
    |||||| ||||||||||||||||||||||||||    
T  18300893 tgtattgtcttcaaaaaccttctaagaaccatt 18300925  T

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Target: scaffold0386 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 357 - 394
Target Start/End: Original strand, 11697 - 11734
Alignment:
Q  357 cttcaaaaaccttctaagaaccattaatattcattctt 394  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  11697 cttcaaaaaccttctaagaactatttatattcattctt 11734  T

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Target: scaffold0171 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 397
Target Start/End: Complemental strand, 21623 - 21574
Alignment:
Q  348 ttgtattatcttcaaaaaccttctaagaaccattaatattcattcttcat 397  Q
    ||||||| |||| ||||||||||||||||||||| || |||| |||||||    
T  21623 ttgtattgtctttaaaaaccttctaagaaccattgatcttcaatcttcat 21574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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