View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18314_high_9 (Length: 398)
Name: NF18314_high_9
Description: NF18314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18314_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 9390820 - 9390451
Alignment:
| Q |
1 |
gttttctactccagagatggtgaattattctgctgactctcaaagtgcaccaagtggtatgctgtatgatcacagacctttgaaattaaataccgatgac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9390820 |
gttttctactccagagatggtgaattattctgctgactctcaaagtgcaccaagtggtatgctgtatgatcacagacctttgaaattaaataccgatgac |
9390721 |
T |
|
| Q |
101 |
tatgagagagtttgccacattccaaagaagaaggtatcatatcttgaattgatattatgtactgttattatgtaaattttaattgtgcttgcttgccttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9390720 |
tatgagagagtttgccacattccaaagaagaaggtatcatatcttgaattgatattatgtactgttattatgtaaattttaattgtgcttgcttgccttt |
9390621 |
T |
|
| Q |
201 |
ttagggggcaaacttcagggacctcaagggagtgcttgttaaagaaaacaaggtggaatgggacccctcagttgaaagagtgtatctaaaatctggaaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9390620 |
ttagggggcaaacttcagggacctcaagggagtgcttgttaaagaaaacaaggtggaatgggacccctcagttgaaagagtgtatctaaaatctggaaag |
9390521 |
T |
|
| Q |
301 |
cctttggtattaatcttgacttgtcttgggacacatttattttgaagttagttctttgttgaccacaacc |
370 |
Q |
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| T |
9390520 |
cctttggtactaatcttgacttgtcttgggacacatttattttgaagttagttctttgttgaccacaacc |
9390451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 31940487 - 31940101
Alignment:
| Q |
1 |
gttttctactccagagatggtgaattattctgctgactctcaaagtgcaccaagtggtatgctgtatgatcacagacctttgaaattaaataccgatgac |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31940487 |
gttttctactccagagatggcgaattattctgctgactatcatagtgcaccaagtggtatgctgtatgatcacaggcctttgaaattaaataccgatgac |
31940388 |
T |
|
| Q |
101 |
tatgagagagtttgccacattccaaagaagaaggtatcatatcttgaattgatattatgta---ctgttatt----------------atgtaaatttta |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||| ||| |||||||||||| |
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| T |
31940387 |
tatgagagagtttgccacattccaaagaagaaggtaccgtatcttgaattgatattatgtagtactgtcattttatctttgttgctctatgtaaatttta |
31940288 |
T |
|
| Q |
182 |
attgtgcttgcttgcctttttagggggcaaacttcagggacctcaagggagtgcttgttaaagaaaacaaggtggaatgggacccctcagttgaaagagt |
281 |
Q |
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| T |
31940287 |
attgtgcttgcttgcctttttagggggcaaacttcagggacctcaagggagtgcttgttaaagaaaaaaaggtggaatgggacccctctgttgaaagagt |
31940188 |
T |
|
| Q |
282 |
gtatctaaaatctggaaagcctttggtattaatcttgacttgtctt-gggacacatttattttgaagttagttctttgttgaccaca |
367 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31940187 |
gtatctaaaatctggaaagcctttggtactaatcttgtcttgtcttagggacacatttattttgaagttagttctttgttgaccaca |
31940101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 13537012 - 13536890
Alignment:
| Q |
13 |
agagatggtgaattattctgctgactctcaaagtgcaccaagtggtatgctgtatgatcacagacctttgaaattaaataccgatgactatgagagagtt |
112 |
Q |
| |
|
|||||||||||||||||| ||||||| | ||| |||||||||| ||||| ||||||||| || ||| ||||||| | ||||| ||||||||||| |
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| T |
13537012 |
agagatggtgaattattcagctgactatgaaaacacaccaagtggaatgctatatgatcacttcccattggaattaaacaaagatgattatgagagagtc |
13536913 |
T |
|
| Q |
113 |
tgccacattccaaagaagaaggt |
135 |
Q |
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|||||||||||| | |||||||| |
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| T |
13536912 |
tgccacattccacacaagaaggt |
13536890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 253 - 353
Target Start/End: Complemental strand, 13536453 - 13536352
Alignment:
| Q |
253 |
gtggaatgggacccctcagttgaaagagtgtatctaaaatctggaaagcctttggtattaatcttgacttgtctt-gggacacatttattttgaagttag |
351 |
Q |
| |
|
||||||||||||||||| ||||||||| | ||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||| ||| ||| |
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| T |
13536453 |
gtggaatgggacccctctgttgaaagacaattactaaaatctggcaagcctttggtattaatctcttgttgtcttagggacacatttatttttaagctag |
13536354 |
T |
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| Q |
352 |
tt |
353 |
Q |
| |
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|| |
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| T |
13536353 |
tt |
13536352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 1338671 - 1338285
Alignment:
| Q |
1 |
gttttctactccagagatggtgaattattctgctgactctcaaagtgcaccaagtggtatgctgtatgatcacagacctttgaaattaaataccgatgac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
1338671 |
gttttctactccagagatggtgaattatttggctgactctcaaagtgcaccaagtggtatgctgtatgatcataggcctttgaaattaaataccgatgac |
1338572 |
T |
|
| Q |
101 |
tatgagagagtttgccacattccaaagaagaaggtatcatatcttgaattgatattatgtactgttatt----------------atgtaaattttaatt |
184 |
Q |
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||||||||||||||||||||||||||| ||||||| | |||||| ||||||||||||||||||||||| ||||||||| ||||| |
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| T |
1338571 |
tatgagagagtttgccacattccaaaggagaaggttccctatctttaattgatattatgtactgttattttatctttgttgctccatgtaaattctaatt |
1338472 |
T |
|
| Q |
185 |
gtgcttgcttgcctttttagggggcaaacttcagggacctcaagggagtgcttgttaaagaaaacaaggtggaatgggacccctcagttgaaagagtgta |
284 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| || || |||||||||| |
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| T |
1338471 |
gtgcttgcttgcctttttagggggcaaacttcagggacctcaagggtgttcttgttaaagaaaataaggtggaatgggacccgtcttttaaaagagtgta |
1338372 |
T |
|
| Q |
285 |
tctaaaatctggaaagcctttggtattaatcttgacttgtctt-gggacacatttattttgaagttagttctttgttgaccacaacc |
370 |
Q |
| |
|
|||||||||||| ||||| |||||| ||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1338371 |
tctaaaatctgggaagcccttggtactaatcctgtcttgtcttagggacacatttattttgaagttatttctttgttgaccacaacc |
1338285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 13 - 363
Target Start/End: Complemental strand, 5640546 - 5640178
Alignment:
| Q |
13 |
agagatggtgaattattctgctgactctcaaagtgcaccaagtggtatgctgtatgatcacagacctttgaaattaaataccgatgactatgagagagtt |
112 |
Q |
| |
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||||||||||||||| | ||||||||| ||||||||||||||||| |||||||||||||||| || | ||||||| ||||||||||||||||||| |
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| T |
5640546 |
agagatggtgaattacacagctgactctgaaagtgcaccaagtggtctgctgtatgatcacaggccatatctgttaaataacgatgactatgagagagtt |
5640447 |
T |
|
| Q |
113 |
tgccacattccaaagaagaaggtatcatatcttgaattgatattatgtactgttattat----------------gtaaattttaattgtgcttgcttgc |
196 |
Q |
| |
|
|||| |||||| ||||||||||| | |||||||||||||||||||| |||||||| | ||||||||||||||||| | ||||| |
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| T |
5640446 |
tgcctcattccgaagaagaaggttcctgatcttgaattgatattatgttctgttattttatctttgttgctccctgtaaattttaattgtgcattcttgc |
5640347 |
T |
|
| Q |
197 |
cttttt-agggggcaaacttcagggacctcaagggagtgcttgttaaagaaaacaaggtggaatgggacccctcagttgaaagagtgtatctaaaatctg |
295 |
Q |
| |
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|||||| |||||||||||||||||||||| ||||| |||||||| |||||||| || ||||| ||||||||||| ||||||||||||||||| ||||||| |
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| T |
5640346 |
cttttttagggggcaaacttcagggacctaaagggtgtgcttgtgaaagaaaaaaaagtggagtgggacccctctgttgaaagagtgtatctgaaatctg |
5640247 |
T |
|
| Q |
296 |
gaaagcctttggtattaatcttgacttgtctt-gggacacatttattttgaagttagttctttgttgac |
363 |
Q |
| |
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| |||||||||||| ||||||| ||| ||| | || |||||||||||||||||||||||||||||| |
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| T |
5640246 |
ggaagcctttggtactaatcttctgttgccttagcgatgcatttattttgaagttagttctttgttgac |
5640178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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