View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18314_low_14 (Length: 296)
Name: NF18314_low_14
Description: NF18314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18314_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 281
Target Start/End: Original strand, 7724506 - 7724774
Alignment:
| Q |
13 |
tgaacactgtggggttcagaaacagtaaaactgaaatgtcttttttagaataccgagcgtagaatctaatcatccaatgaagttagtgttgcactatacc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7724506 |
tgaacactgtggggttcagaaacagtaaaactgaaatgtcttttttagaataccgagcgtagaatctaatcatccaatgaagttagtgttgcactatacc |
7724605 |
T |
|
| Q |
113 |
tgcaaactcaggtcactttttcattgtaaaaacctaacatcattaccggtattatctttttagagtaccaactaccatgtagttaagcatcaaaattagc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7724606 |
tgcaaactcaggtcactttttcattgtaaaaacctaacatcattaccggtattatctttttagagtaccaactaccatgtagttaagcatcaaaattagc |
7724705 |
T |
|
| Q |
213 |
atgtcttacgtattaacaaaacaaaatcaacaaattgtgtaactttttagagtagcacccctaaatcct |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7724706 |
atgtcttacgtattaacaaaacaaaatcaacaaattgtgtaactttttagagtagcacccctaaatcct |
7724774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University