View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18314_low_16 (Length: 264)
Name: NF18314_low_16
Description: NF18314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18314_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 31295677 - 31295437
Alignment:
| Q |
19 |
tcatcacatttgtagcagaagcacaatgtatcaaacatacccattgggctttgaagcacactagagacagaagaggcatttgaatccttggcagtgaaaa |
118 |
Q |
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| T |
31295677 |
tcatcacatttgtagcggaagcgcaatgtatcaaacatacccattgggctttgaagcacactagagacagaagaggcatttgaatccttggcagtgaaaa |
31295578 |
T |
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| Q |
119 |
cacacatctcttgcaccttttcaacacacttcaataatctctccttttctatgtattgaatcagagtagaaattgatttgctactatcaattgcttgaaa |
218 |
Q |
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| T |
31295577 |
tacacatctcttgcaccttttcaacacacttcaataatctctccttttctatgtattgaatcagagtagaaattgatttgctactatcaattgcttgaaa |
31295478 |
T |
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| Q |
219 |
ttctccaacaacatatgttgccactgctgctgcaatctctg |
259 |
Q |
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| T |
31295477 |
ttcttctacaacatatgttgccactgctgctgcaatctctg |
31295437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 46341010 - 46341159
Alignment:
| Q |
19 |
tcatcacatttgtagcagaagcacaatgtatcaaacatacccattgggctttgaagcacactagagacagaagaggcatttgaatccttggcagtgaaaa |
118 |
Q |
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||||||| |||||||| ||||||||||||||| |||| |||||||||||||||| ||||||||| ||||||||| ||| ||||||||||| ||||||| | |
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| T |
46341010 |
tcatcacttttgtagctgaagcacaatgtatccaacacacccattgggctttgaggcacactagggacagaagatgcacttgaatccttgccagtgaaca |
46341109 |
T |
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| Q |
119 |
cac---------acatctcttgcaccttttcaacacacttcaataatctc |
159 |
Q |
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| T |
46341110 |
cactgttcaatgacatctcttggacctttccaacacacttcaataatctc |
46341159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 161 - 259
Target Start/End: Original strand, 46341492 - 46341590
Alignment:
| Q |
161 |
ccttttctatgtattgaatcagagtagaaattgatttgctactatcaattgcttgaaattctccaacaacatatgttgccactgctgctgcaatctctg |
259 |
Q |
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||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||| |||||||||| |||||||||||||||| |
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| T |
46341492 |
ccttttctacgtattgaatcagagtggaaattgatttgctactatcaattgcttgggtttccccaacaacacatgttgccacagctgctgcaatctctg |
46341590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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