View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18314_low_18 (Length: 247)
Name: NF18314_low_18
Description: NF18314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18314_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 31608313 - 31608536
Alignment:
| Q |
19 |
aaaaatcaccactcactcattgc------gattgaatgcagaagtgttgtcaagttgatcttcatcatcatcagaattttttggtggatttgttggtagc |
112 |
Q |
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| T |
31608313 |
aaaaatcaccactcactcattgccagtaagattgaatgcagaagtgttgtcaagttgatcttcatcatcatcagaattttttggtggatttgttggtagc |
31608412 |
T |
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| Q |
113 |
tgaggattctccatttgcggatcagtccccaaaccttcgcttcctgtgctacccgttggttcaccatcatgggaattgatcgtcgattgcggatcagtcc |
212 |
Q |
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| T |
31608413 |
tgaggattctccatttgcggatcagtccccaaaccttcgcttcctgtgctacccgttggttcaccatcatgggaatcgatcgtcgattgcggatcagtcc |
31608512 |
T |
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| Q |
213 |
ctaaatcttcgcttcctatgctac |
236 |
Q |
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| T |
31608513 |
ccaaatcttcgcttcctgtgctac |
31608536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 59 - 165
Target Start/End: Original strand, 31612895 - 31613001
Alignment:
| Q |
59 |
ttgtcaagttgatcttcatcatcatcagaattttttggtggatttgttggtagctgaggattctccatttgcggatcagtccccaaaccttcgcttcctg |
158 |
Q |
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| T |
31612895 |
ttgtcaagttgatcttcatcatcatcagaattttttggtggatttgttggtagcagaggattatgcgtttgcggatcagtccccaatcctccgcttcctg |
31612994 |
T |
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| Q |
159 |
tgctacc |
165 |
Q |
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| T |
31612995 |
tgctacc |
31613001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 31623751 - 31623822
Alignment:
| Q |
42 |
gattgaatgcagaagtgttgtcaagttgatcttcatcatcatcagaattttttggtggatttgttggtagct |
113 |
Q |
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| T |
31623751 |
gattgaatgcaaaagtgttgtcaagttgatcttcatcatcatcagaatcttttggtggattttttggtagct |
31623822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 127 - 177
Target Start/End: Original strand, 31608499 - 31608549
Alignment:
| Q |
127 |
ttgcggatcagtccccaaaccttcgcttcctgtgctacccgttggttcacc |
177 |
Q |
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| T |
31608499 |
ttgcggatcagtccccaaatcttcgcttcctgtgctacccgttggttcacc |
31608549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 31619074 - 31619130
Alignment:
| Q |
42 |
gattgaatgcagaagtgttgtcaagttgatcttcatcatcatcagaattttttggtg |
98 |
Q |
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| T |
31619074 |
gattgaatgcaaaagtgttatcaagttgatcttcatcgtcatcagaatttattggtg |
31619130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 31605157 - 31605212
Alignment:
| Q |
42 |
gattgaatgcagaagtgttgtcaagttgatcttcatcatcatcagaattttttggt |
97 |
Q |
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| T |
31605157 |
gattgaatgcaaaagtgttgtcaagttgatcttcatcgtcatcagagtttgttggt |
31605212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 173
Target Start/End: Original strand, 31623932 - 31624029
Alignment:
| Q |
76 |
atcatcatcagaattttttggtggatttgttggtagctgaggattctccatttgcggatcagtccccaaaccttcgcttcctgtgctacccgttggtt |
173 |
Q |
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| T |
31623932 |
atcatcatcagaagtttttggtggaattgttattccctgagcattctccgtttttggaccagtccccaatcctcttcttcctttcctacccgttggtt |
31624029 |
T |
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