View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18314_low_4 (Length: 568)

Name: NF18314_low_4
Description: NF18314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18314_low_4
NF18314_low_4
[»] chr6 (45 HSPs)
chr6 (18-558)||(12627336-12627893)
chr6 (217-303)||(21924910-21924996)
chr6 (202-294)||(9025449-9025546)
chr6 (254-351)||(9658831-9658926)
chr6 (237-294)||(7265588-7265645)
chr6 (242-308)||(26562682-26562748)
chr6 (237-294)||(19040359-19040416)
chr6 (202-294)||(7938123-7938215)
chr6 (250-350)||(20371118-20371218)
chr6 (250-309)||(9195762-9195821)
chr6 (243-293)||(5462694-5462744)
chr6 (240-294)||(32511664-32511718)
chr6 (237-294)||(7377986-7378043)
chr6 (253-350)||(7996389-7996485)
chr6 (253-350)||(8022316-8022412)
chr6 (237-294)||(13851743-13851800)
chr6 (237-293)||(31579222-31579276)
chr6 (237-293)||(5732505-5732561)
chr6 (250-294)||(7086802-7086846)
chr6 (242-294)||(7151419-7151471)
chr6 (237-321)||(8776968-8777052)
chr6 (250-294)||(30866152-30866196)
chr6 (237-321)||(34595114-34595198)
chr6 (482-553)||(4859114-4859185)
chr6 (482-529)||(9024177-9024224)
chr6 (250-321)||(9027158-9027229)
chr6 (250-293)||(9617442-9617485)
chr6 (241-292)||(9629392-9629443)
chr6 (250-285)||(11591878-11591913)
chr6 (494-541)||(13689206-13689253)
chr6 (237-308)||(33001284-33001355)
chr6 (248-294)||(7248365-7248411)
chr6 (259-321)||(9107387-9107449)
chr6 (259-352)||(12696275-12696366)
chr6 (252-290)||(13360382-13360420)
chr6 (237-291)||(13364700-13364754)
chr6 (496-534)||(27661742-27661780)
chr6 (248-293)||(7569174-7569219)
chr6 (242-315)||(8931602-8931675)
chr6 (496-529)||(26650240-26650273)
chr6 (496-529)||(26756208-26756241)
chr6 (253-294)||(34073358-34073399)
chr6 (250-294)||(10842539-10842583)
chr6 (250-294)||(19044471-19044515)
chr6 (250-294)||(26178689-26178733)
[»] chr1 (54 HSPs)
chr1 (203-294)||(12443422-12443512)
chr1 (202-309)||(13436450-13436558)
chr1 (250-350)||(17831539-17831638)
chr1 (250-294)||(20157358-20157402)
chr1 (250-322)||(34712391-34712463)
chr1 (250-321)||(38503300-38503371)
chr1 (237-294)||(40181878-40181935)
chr1 (237-293)||(1864875-1864931)
chr1 (242-294)||(6427357-6427409)
chr1 (250-294)||(7918219-7918263)
chr1 (483-558)||(14332391-14332465)
chr1 (236-283)||(30749858-30749905)
chr1 (236-283)||(30771309-30771356)
chr1 (476-542)||(19637766-19637832)
chr1 (259-321)||(34298416-34298478)
chr1 (248-294)||(36906004-36906050)
chr1 (237-323)||(52903227-52903313)
chr1 (237-294)||(9709827-9709884)
chr1 (237-294)||(14332637-14332694)
chr1 (250-291)||(25098563-25098604)
chr1 (250-291)||(25361896-25361937)
chr1 (202-294)||(25452110-25452200)
chr1 (243-308)||(27471567-27471632)
chr1 (237-294)||(36878468-36878525)
chr1 (248-293)||(42325568-42325613)
chr1 (250-291)||(44482240-44482281)
chr1 (250-294)||(10233260-10233304)
chr1 (251-291)||(19324572-19324612)
chr1 (250-294)||(34371721-34371764)
chr1 (238-294)||(38075966-38076022)
chr1 (242-294)||(40285654-40285706)
chr1 (250-321)||(398773-398844)
chr1 (261-320)||(2896140-2896199)
chr1 (259-294)||(31015050-31015085)
chr1 (259-321)||(5376517-5376579)
chr1 (494-548)||(7988464-7988518)
chr1 (250-308)||(19562629-19562687)
chr1 (476-510)||(22416469-22416503)
chr1 (240-294)||(35999320-35999374)
chr1 (202-293)||(2288129-2288218)
chr1 (259-356)||(3490407-3490503)
chr1 (253-294)||(5898277-5898318)
chr1 (237-350)||(22881611-22881723)
chr1 (237-350)||(38078656-38078769)
chr1 (486-543)||(39828268-39828325)
chr1 (237-294)||(39953141-39953198)
chr1 (250-294)||(1486717-1486761)
chr1 (498-554)||(5376517-5376573)
chr1 (250-294)||(9828051-9828095)
chr1 (250-294)||(10572597-10572641)
chr1 (250-282)||(17705594-17705626)
chr1 (237-321)||(23636044-23636128)
chr1 (258-294)||(26238128-26238164)
chr1 (237-293)||(28674808-28674864)
[»] chr8 (36 HSPs)
chr8 (237-294)||(34897092-34897149)
chr8 (237-308)||(13844591-13844662)
chr8 (240-351)||(4786336-4786446)
chr8 (202-308)||(27213540-27213640)
chr8 (237-308)||(31236572-31236643)
chr8 (462-543)||(1676709-1676789)
chr8 (237-294)||(3025558-3025615)
chr8 (221-294)||(4948659-4948731)
chr8 (248-293)||(11803267-11803312)
chr8 (476-529)||(12985403-12985456)
chr8 (237-293)||(12985400-12985456)
chr8 (254-294)||(14134706-14134746)
chr8 (250-294)||(14731719-14731763)
chr8 (250-294)||(24362210-24362254)
chr8 (252-307)||(4611528-4611583)
chr8 (250-293)||(11927094-11927137)
chr8 (234-293)||(18646180-18646239)
chr8 (259-294)||(37283827-37283862)
chr8 (251-294)||(39954288-39954331)
chr8 (239-321)||(926785-926867)
chr8 (239-293)||(31580124-31580178)
chr8 (493-547)||(37225755-37225809)
chr8 (237-283)||(38079017-38079063)
chr8 (493-534)||(3508058-3508099)
chr8 (243-308)||(12559107-12559171)
chr8 (250-295)||(20679403-20679448)
chr8 (250-283)||(26902183-26902216)
chr8 (248-321)||(36934650-36934723)
chr8 (259-292)||(40332200-40332233)
chr8 (254-294)||(7658470-7658510)
chr8 (250-310)||(11944656-11944716)
chr8 (250-294)||(12606837-12606881)
chr8 (254-294)||(13203648-13203688)
chr8 (262-294)||(18067954-18067986)
chr8 (487-539)||(26466554-26466606)
chr8 (237-321)||(36450749-36450833)
[»] chr5 (31 HSPs)
chr5 (237-294)||(34879357-34879414)
chr5 (237-294)||(30502383-30502440)
chr5 (237-294)||(30542726-30542783)
chr5 (250-294)||(6471897-6471941)
chr5 (237-293)||(28588669-28588725)
chr5 (242-294)||(41091257-41091309)
chr5 (202-294)||(6247629-6247725)
chr5 (236-293)||(17925166-17925223)
chr5 (237-294)||(21576740-21576797)
chr5 (496-529)||(28136676-28136709)
chr5 (250-294)||(3966510-3966554)
chr5 (236-323)||(2548366-2548452)
chr5 (494-541)||(18607110-18607157)
chr5 (251-290)||(24273039-24273078)
chr5 (251-290)||(24389136-24389175)
chr5 (253-308)||(35017030-35017085)
chr5 (248-294)||(17593728-17593774)
chr5 (237-291)||(18421836-18421890)
chr5 (250-323)||(19168829-19168902)
chr5 (237-294)||(21191051-21191108)
chr5 (237-290)||(21194200-21194253)
chr5 (244-285)||(23015991-23016032)
chr5 (250-283)||(39758290-39758323)
chr5 (202-290)||(6326257-6326345)
chr5 (261-321)||(6770523-6770583)
chr5 (237-281)||(14422922-14422966)
chr5 (259-323)||(14674247-14674311)
chr5 (259-291)||(19438353-19438385)
chr5 (250-294)||(27144470-27144514)
chr5 (242-294)||(39205887-39205939)
chr5 (483-539)||(43208276-43208332)
[»] chr2 (37 HSPs)
chr2 (250-350)||(23717979-23718077)
chr2 (250-350)||(24105651-24105749)
chr2 (259-350)||(21374716-21374807)
chr2 (237-294)||(5367199-5367256)
chr2 (482-543)||(31026692-31026753)
chr2 (237-294)||(37411239-37411296)
chr2 (250-294)||(21616769-21616813)
chr2 (18-61)||(1254245-1254288)
chr2 (480-562)||(37402083-37402166)
chr2 (482-544)||(18570968-18571030)
chr2 (237-283)||(20242722-20242768)
chr2 (465-522)||(896229-896286)
chr2 (259-308)||(21782835-21782884)
chr2 (237-294)||(34691800-34691857)
chr2 (237-294)||(34714212-34714269)
chr2 (237-293)||(5473336-5473392)
chr2 (250-294)||(18889599-18889643)
chr2 (242-294)||(29970549-29970601)
chr2 (220-308)||(42832254-42832342)
chr2 (250-294)||(44860327-44860371)
chr2 (230-293)||(12748692-12748754)
chr2 (250-285)||(32749833-32749868)
chr2 (250-293)||(35449521-35449564)
chr2 (250-293)||(39279683-39279726)
chr2 (235-293)||(23921261-23921319)
chr2 (252-294)||(28677916-28677958)
chr2 (462-543)||(30298430-30298509)
chr2 (250-308)||(31808070-31808128)
chr2 (252-293)||(36281693-36281734)
chr2 (236-308)||(896204-896276)
chr2 (261-293)||(2331802-2331834)
chr2 (483-539)||(16630796-16630852)
chr2 (250-294)||(18276528-18276572)
chr2 (242-294)||(18622613-18622665)
chr2 (250-298)||(30471041-30471089)
chr2 (242-294)||(30717530-30717582)
chr2 (466-542)||(37497118-37497194)
[»] scaffold0020 (1 HSPs)
scaffold0020 (250-309)||(135320-135379)
[»] chr7 (40 HSPs)
chr7 (237-308)||(20549784-20549855)
chr7 (259-320)||(29787386-29787447)
chr7 (250-294)||(22868049-22868093)
chr7 (237-294)||(3721100-3721157)
chr7 (237-294)||(25481909-25481966)
chr7 (242-294)||(6630912-6630964)
chr7 (239-291)||(9482944-9482996)
chr7 (242-290)||(17307904-17307952)
chr7 (250-294)||(17851438-17851482)
chr7 (238-294)||(32287459-32287515)
chr7 (250-294)||(32308127-32308171)
chr7 (259-294)||(2424621-2424656)
chr7 (452-539)||(12278836-12278922)
chr7 (250-321)||(19206030-19206101)
chr7 (250-285)||(22602718-22602753)
chr7 (242-293)||(35297672-35297723)
chr7 (488-547)||(38134413-38134472)
chr7 (482-540)||(3095433-3095491)
chr7 (251-293)||(16341504-16341546)
chr7 (237-283)||(18213028-18213074)
chr7 (237-315)||(21826259-21826337)
chr7 (481-551)||(23948381-23948451)
chr7 (259-321)||(27945021-27945083)
chr7 (220-294)||(28155577-28155651)
chr7 (237-283)||(39138462-39138508)
chr7 (476-529)||(4909162-4909215)
chr7 (248-293)||(5233637-5233682)
chr7 (250-291)||(5548686-5548727)
chr7 (236-293)||(12278843-12278899)
chr7 (237-294)||(21880159-21880216)
chr7 (237-294)||(26733311-26733368)
chr7 (259-292)||(30731046-30731079)
chr7 (250-294)||(5835254-5835298)
chr7 (261-321)||(8842354-8842414)
chr7 (250-294)||(19992008-19992052)
chr7 (213-253)||(23746967-23747007)
chr7 (494-542)||(23930217-23930265)
chr7 (493-529)||(36314639-36314675)
chr7 (237-293)||(38143231-38143287)
chr7 (499-547)||(41360903-41360951)
[»] chr3 (37 HSPs)
chr3 (242-293)||(16192750-16192801)
chr3 (237-294)||(7928457-7928514)
chr3 (249-306)||(11313807-11313864)
chr3 (253-294)||(11493372-11493413)
chr3 (237-294)||(45451560-45451617)
chr3 (237-321)||(8383237-8383321)
chr3 (237-321)||(25093482-25093566)
chr3 (237-308)||(8789545-8789616)
chr3 (244-323)||(29508422-29508501)
chr3 (213-283)||(13414487-13414557)
chr3 (242-323)||(25948887-25948968)
chr3 (488-529)||(45382754-45382795)
chr3 (237-294)||(49505149-49505206)
chr3 (242-294)||(3164025-3164077)
chr3 (237-285)||(6780414-6780462)
chr3 (254-294)||(10690274-10690314)
chr3 (251-295)||(14618787-14618831)
chr3 (482-554)||(19323449-19323521)
chr3 (237-293)||(20691327-20691383)
chr3 (237-281)||(40993330-40993374)
chr3 (237-328)||(10954925-10955016)
chr3 (259-294)||(11251985-11252020)
chr3 (250-293)||(32804548-32804591)
chr3 (244-294)||(1438811-1438861)
chr3 (251-289)||(4704301-4704339)
chr3 (252-294)||(12704014-12704056)
chr3 (496-554)||(28590859-28590917)
chr3 (202-247)||(8789492-8789537)
chr3 (253-294)||(9624648-9624689)
chr3 (238-283)||(35222956-35223001)
chr3 (477-534)||(40150567-40150624)
chr3 (250-294)||(8039843-8039887)
chr3 (242-294)||(10455797-10455849)
chr3 (269-321)||(12674528-12674580)
chr3 (242-290)||(15314876-15314924)
chr3 (489-529)||(21419463-21419503)
chr3 (250-294)||(34307788-34307832)
[»] chr4 (30 HSPs)
chr4 (249-294)||(36635331-36635376)
chr4 (196-298)||(17425345-17425445)
chr4 (202-293)||(22440561-22440651)
chr4 (252-293)||(903930-903971)
chr4 (494-547)||(5654604-5654657)
chr4 (237-294)||(8423713-8423770)
chr4 (241-294)||(15029772-15029825)
chr4 (483-540)||(18513243-18513300)
chr4 (237-294)||(54580018-54580075)
chr4 (217-285)||(10499246-10499313)
chr4 (243-291)||(18576038-18576086)
chr4 (250-294)||(40613457-40613501)
chr4 (488-540)||(43300616-43300668)
chr4 (248-292)||(46180942-46180986)
chr4 (250-293)||(5775366-5775409)
chr4 (493-540)||(43299983-43300030)
chr4 (251-321)||(13783261-13783331)
chr4 (236-294)||(33950143-33950201)
chr4 (494-547)||(10546141-10546194)
chr4 (242-283)||(13134468-13134509)
chr4 (237-294)||(16189716-16189773)
chr4 (248-293)||(20743284-20743329)
chr4 (472-529)||(33950147-33950204)
chr4 (250-294)||(6933282-6933326)
chr4 (252-292)||(9996849-9996889)
chr4 (237-321)||(23292981-23293065)
chr4 (250-298)||(30103365-30103412)
chr4 (237-281)||(40179631-40179675)
chr4 (238-285)||(42014974-42015022)
chr4 (237-293)||(48139272-48139328)
[»] scaffold0022 (2 HSPs)
scaffold0022 (493-547)||(99886-99940)
scaffold0022 (237-293)||(90851-90907)
[»] scaffold0199 (1 HSPs)
scaffold0199 (462-543)||(1946-2026)
[»] scaffold0123 (1 HSPs)
scaffold0123 (250-294)||(44533-44577)
[»] scaffold0036 (1 HSPs)
scaffold0036 (250-294)||(9755-9799)
[»] scaffold0306 (1 HSPs)
scaffold0306 (263-321)||(13380-13438)
[»] scaffold0223 (1 HSPs)
scaffold0223 (259-321)||(20152-20214)
[»] scaffold0152 (1 HSPs)
scaffold0152 (263-321)||(21889-21947)
[»] scaffold0103 (1 HSPs)
scaffold0103 (259-321)||(51791-51853)
[»] scaffold0044 (1 HSPs)
scaffold0044 (250-292)||(53189-53231)
[»] scaffold0050 (1 HSPs)
scaffold0050 (237-293)||(70286-70342)
[»] scaffold0018 (1 HSPs)
scaffold0018 (510-554)||(192075-192119)
[»] scaffold0008 (1 HSPs)
scaffold0008 (250-294)||(263380-263424)


Alignment Details
Target: chr6 (Bit Score: 449; Significance: 0; HSPs: 45)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 18 - 558
Target Start/End: Original strand, 12627336 - 12627893
Alignment:
Q  18 tgttcttggttgcaaatttgtttgttctgctgttaacaaggtaccttcactctctttctcttctccaaaacaatttccataggttttctgcacttacgta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12627336 tgttcttggttgcaaatttgtttgttctgctgttaacaaggtaccttcactctctttctcttctccaaaacaatttccataggttttctgcacttacgta 12627435  T
Q  118 atatgatattttgagttaccatgctcagagggtcaccactgatcataattctaagtttcgtaattaatcaaagtgttttaatacgaa-gcactgatactt 216  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  12627436 atatgagaatttgagttaccatgctcagagggtcaccactgatcataattctaagtttcgtaattaatcaaagtgttttaatacgaaagcactgatattt 12627535  T
Q  217 ctcggattaggagtgtctcggtg----------------tccgacatcaacacatattattacactgaattatgtgattttctcacattattaggagttt 300  Q
    |||||||||||||||||||||||                ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12627536 ctcggattaggagtgtctcggtgtcggacatgtgtggtgtccgacatcgacacatattattacactgaattatgtgattttttcacattattaggagttt 12627635  T
Q  301 cggtgtgttactgtccgtgtctggtgtctgtgtctgtatatgtgcttcattaaatatgggaatgttgttatcaagattcatttttgtggttgtagtgttg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12627636 cggtgtgttactgtccgtgtctggtgtctgtgtctgtatatgtgcttcattaaatatgggaatgttgttatcatgattcatttttgtggttgtagtgttg 12627735  T
Q  401 taatctttgatataggttgatgtggagcatggacactccttttatttggcatgtcccagtttcagacatgtgttggtgtcagacactgacatatatgatt 500  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  12627736 taatctttgatataggttgatgtggagcatggacactcctcttattaggcatgtcccagtttcagacatgtgttggtgtcagacatcgacatatatgatt 12627835  T
Q  501 acattgaaatatgttattttcttaaattagtatccgtgtcgacatgttagtgtctgtg 558  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  12627836 acattgaaatatgttattttcttaaattagtatccgtgtcgacgtgttagtgtttgtg 12627893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 303
Target Start/End: Original strand, 21924910 - 21924996
Alignment:
Q  217 ctcggattaggagtgtctcggtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattaggagtttcgg 303  Q
    ||||||||||| ||||| |||||||||||| | |||||||| ||||||||||||||| |||| |||||| |||||||| ||| ||||    
T  21924910 ctcggattaggcgtgtcccggtgtccgacaccgacacatataattacactgaattatttgatattctcaaattattagcagtgtcgg 21924996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 202 - 294
Target Start/End: Original strand, 9025449 - 9025546
Alignment:
Q  202 gaagcactgatacttctcggattaggagtgtctcggtgtc-----cgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    ||||||| || ||||||||||||||| ||||| |||||||     ||||| | |||||||| ||||||||||||||||||||||||||| ||||||||    
T  9025449 gaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgacaccgacacatataattacactgaattatgtgattttctcaaattattag 9025546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 254 - 351
Target Start/End: Complemental strand, 9658926 - 9658831
Alignment:
Q  254 atattattacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtctggtgtctgtgtctgtatatgtgcttcatt 351  Q
    |||| ||||||||||||||||||||||||| | ||||||||  || |||| |||| | ||||||||||  ||||||||||||||||  ||||||||||    
T  9658926 atataattacactgaattatgtgattttcttaaattattagcggtgtcggcgtgtcagtgtccgtgtc--gtgtctgtgtctgtatccgtgcttcatt 9658831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 7265588 - 7265645
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||||| | |||||||| ||||||||||||||||||||||||||| ||||||||    
T  7265588 gtgtccgacaccgacacatataattacactgaattatgtgattttctcaaattattag 7265645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 26562748 - 26562682
Alignment:
Q  242 cgacatcaacacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgt 308  Q
    ||||||| |||||||| ||||||||||||||||||||||||||| ||| |||| ||| |||| ||||    
T  26562748 cgacatcgacacatataattacactgaattatgtgattttctcaaatttttagcagtgtcggcgtgt 26562682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 19040416 - 19040359
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    ||||||||||   |||||||| ||||||||||||||||||||||||||| ||||||||    
T  19040416 gtgtccgacacagacacatataattacactgaattatgtgattttctcaaattattag 19040359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 294
Target Start/End: Complemental strand, 7938215 - 7938123
Alignment:
Q  202 gaagcactgatacttctcggattaggagtgtctcggtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    ||||||| || ||| ||||||| ||| ||||||||||||| |||| | |||| ||| |||||||| |||||| ||||||| ||| ||||||||    
T  7938215 gaagcacggacactcctcggatcaggcgtgtctcggtgtcggacaccgacacttataattacactaaattatatgattttttcaaattattag 7938123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 350
Target Start/End: Original strand, 20371118 - 20371218
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtctggtgtctgtgtctgtatatgtgcttca 349  Q
    |||||||| || ||| ||| |||||||||||||||| ||||||||  || |||| |||| | |||||||||| ||| |||||||| ||||  ||||||||    
T  20371118 acacatataatcacattgagttatgtgattttctcaaattattagcggtgtcggcgtgtcaatgtccgtgtccggtttctgtgtccgtatccgtgcttca 20371217  T
Q  350 t 350  Q
    |    
T  20371218 t 20371218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 250 - 309
Target Start/End: Original strand, 9195762 - 9195821
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgtt 309  Q
    |||||||| |||||||| |||||||| ||||||||| |||||||||||| ||| ||||||    
T  9195762 acacatataattacactaaattatgtcattttctcaaattattaggagtgtcgatgtgtt 9195821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 293
Target Start/End: Complemental strand, 5462744 - 5462694
Alignment:
Q  243 gacatcaacacatattattacactgaattatgtgattttctcacattatta 293  Q
    |||||||||| |||| |||||| |||||||||||||||||||| |||||||    
T  5462744 gacatcaacatatataattacaatgaattatgtgattttctcaaattatta 5462694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 32511664 - 32511718
Alignment:
Q  240 tccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    ||||||| |||||| ||| ||||||||||||||||||||||||| | ||||||||    
T  32511664 tccgacaccaacacttataattacactgaattatgtgattttcttaaattattag 32511718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 7378043 - 7377986
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||||| | |||||||| |||||| |||||||||||||||||||| ||| ||||    
T  7378043 gtgtccgacaccgacacatataattacattgaattatgtgattttctcaaatttttag 7377986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 253 - 350
Target Start/End: Original strand, 7996389 - 7996485
Alignment:
Q  253 catattattacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtctggtgtctgtgtctgtatatgtgcttcat 350  Q
    ||||| ||||||||||||||| ||||||||||| |||||||| ||| ||||  ||| | ||||| ||||  ||  |||||||||||| ||||||||||    
T  7996389 catataattacactgaattatatgattttctcaaattattagcagtgtcggcatgtcagtgtccttgtcatgt-actgtgtctgtatctgtgcttcat 7996485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 253 - 350
Target Start/End: Complemental strand, 8022412 - 8022316
Alignment:
Q  253 catattattacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtctggtgtctgtgtctgtatatgtgcttcat 350  Q
    ||||| ||||||||||||||| ||||||||||| |||||||| ||| ||||  ||| | ||||| ||||  ||  |||||||||||| ||||||||||    
T  8022412 catataattacactgaattatatgattttctcaaattattagcagtgtcggcatgtcagtgtccttgtcatgt-actgtgtctgtatctgtgcttcat 8022316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 13851800 - 13851743
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    ||||| |||||| |||||||| |||||||||||||| || ||||||||| ||||||||    
T  13851800 gtgtcagacatcgacacatataattacactgaattacgttattttctcaaattattag 13851743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 31579222 - 31579276
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattatta 293  Q
    |||||||||| | |||||||  ||||||||||||||||||||||||||| |||||||    
T  31579222 gtgtccgacaccgacacata--attacactgaattatgtgattttctcaaattatta 31579276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 5732505 - 5732561
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattatta 293  Q
    |||||||||| | |||||||| |||||||| || ||||||||||||||| |||||||    
T  5732505 gtgtccgacaccgacacatataattacactaaaatatgtgattttctcaaattatta 5732561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 7086846 - 7086802
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||| |||||||| |||||||||||||||||| ||||||||    
T  7086846 acacatataattacactaaattatgtgattttctcaaattattag 7086802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 7151471 - 7151419
Alignment:
Q  242 cgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    ||||| |||||||||| |||||||| |||||||||||||| ||| ||||||||    
T  7151471 cgacaccaacacatataattacacttaattatgtgattttttcaaattattag 7151419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 321
Target Start/End: Original strand, 8776968 - 8777052
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtc 321  Q
    |||||||||| |||||| | | ||||||||||||| ||||||||| ||| ||||||||  || |||| |||| | ||||||||||    
T  8776968 gtgtccgacaccaacacttgtaattacactgaattttgtgattttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtc 8777052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 30866152 - 30866196
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||| |||||| |||||||||||||||||||| ||||||||    
T  30866152 acacatataattacattgaattatgtgattttctcaaattattag 30866196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 321
Target Start/End: Complemental strand, 34595198 - 34595114
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtc 321  Q
    |||||||||| | |||| | | ||||||||||||||||||||||| ||| ||||||||  || |||| |||| | ||||||||||    
T  34595198 gtgtccgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagttgtgtcggcgtgtcattgtccgtgtc 34595114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 553
Target Start/End: Original strand, 4859114 - 4859185
Alignment:
Q  482 gacactgacatatatgattacattgaaatatgttattttcttaaattagtatccgtgtcgacatgttagtgt 553  Q
    ||||||||||  | ||||||||||| | ||||| ||||||| |||||| |||  ||||||||||||||||||    
T  4859114 gacactgacacgtgtgattacattggattatgtcattttctcaaattattattggtgtcgacatgttagtgt 4859185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 529
Target Start/End: Original strand, 9024177 - 9024224
Alignment:
Q  482 gacactgacatatatgattacattgaaatatgttattttcttaaatta 529  Q
    |||||||||| |||||||||||||||| ||||| ||||||| ||||||    
T  9024177 gacactgacacatatgattacattgaattatgtcattttctcaaatta 9024224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 321
Target Start/End: Complemental strand, 9027229 - 9027158
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtc 321  Q
    |||||||| ||||||| ||||||||||||| ||||| ||||||||  || |||| |||| | ||||||||||    
T  9027229 acacatataattacacggaattatgtgattatctcaaattattagcggtgtcggcgtgtcagtgtccgtgtc 9027158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 293
Target Start/End: Complemental strand, 9617485 - 9617442
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattatta 293  Q
    |||||||| |||||| |||||||||||||||||||| |||||||    
T  9617485 acacatataattacattgaattatgtgattttctcaaattatta 9617442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 292
Target Start/End: Complemental strand, 9629443 - 9629392
Alignment:
Q  241 ccgacatcaacacatattattacactgaattatgtgattttctcacattatt 292  Q
    |||||| | |||||||| |||||| |||||||||||||||||||| ||||||    
T  9629443 ccgacaccgacacatataattacattgaattatgtgattttctcaaattatt 9629392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 285
Target Start/End: Original strand, 11591878 - 11591913
Alignment:
Q  250 acacatattattacactgaattatgtgattttctca 285  Q
    |||||||| |||||||||||||||||||||||||||    
T  11591878 acacatataattacactgaattatgtgattttctca 11591913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 494 - 541
Target Start/End: Original strand, 13689206 - 13689253
Alignment:
Q  494 tatgattacattgaaatatgttattttcttaaattagtatccgtgtcg 541  Q
    ||||||||||||||||| ||||||||||| |||||| |||| ||||||    
T  13689206 tatgattacattgaaatttgttattttctcaaattattatctgtgtcg 13689253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 308
Target Start/End: Original strand, 33001284 - 33001355
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgt 308  Q
    |||||||||| | |||||||| |||||| | |||||||||||||| ||| |||||||| ||| |||| ||||    
T  33001284 gtgtccgacaccgacacatataattacatttaattatgtgattttttcaaattattagcagtgtcggcgtgt 33001355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 294
Target Start/End: Complemental strand, 7248411 - 7248365
Alignment:
Q  248 caacacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||||| ||||| |||||||||||||||| |||| ||||||||    
T  7248411 caacacatataattaccctgaattatgtgatttcctcagattattag 7248365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 9107387 - 9107449
Alignment:
Q  259 attacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtc 321  Q
    ||||||||||||| ||||||||| ||| ||||||||  || |||| |||||| ||||||||||    
T  9107387 attacactgaattttgtgattttttcaaattattagctgtgtcggcgtgttagtgtccgtgtc 9107449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 352
Target Start/End: Complemental strand, 12696366 - 12696275
Alignment:
Q  259 attacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtctggtgtctgtgtctgtatatgtgcttcatta 352  Q
    ||||||||||||||||| ||||| ||| ||||||||  || |||| |||| | ||||||||||  ||||| ||||| ||||  |||||||||||    
T  12696366 attacactgaattatgtaattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc--gtgtccgtgtccgtatccgtgcttcatta 12696275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 290
Target Start/End: Original strand, 13360382 - 13360420
Alignment:
Q  252 acatattattacactgaattatgtgattttctcacatta 290  Q
    |||||| ||||||||||||||||||||||||||| ||||    
T  13360382 acatataattacactgaattatgtgattttctcaaatta 13360420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 13364700 - 13364754
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattat 291  Q
    |||||| ||| | |||||||| ||||||||||||||| ||||||||||| |||||    
T  13364700 gtgtccaacaccgacacatatgattacactgaattatatgattttctcaaattat 13364754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 534
Target Start/End: Complemental strand, 27661780 - 27661742
Alignment:
Q  496 tgattacattgaaatatgttattttcttaaattagtatc 534  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  27661780 tgattacattgaaatatattattttcttaaattactatc 27661742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 293
Target Start/End: Original strand, 7569174 - 7569219
Alignment:
Q  248 caacacatattattacactgaattatgtgattttctcacattatta 293  Q
    |||||| ||| ||||||||||||||||| ||||||||| |||||||    
T  7569174 caacacctataattacactgaattatgtaattttctcaaattatta 7569219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 315
Target Start/End: Original strand, 8931602 - 8931675
Alignment:
Q  242 cgacatcaacacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtc 315  Q
    ||||||| |||||||| |||| |||||||||||| ||||||||| ||| ||||  || |||| ||||| |||||    
T  8931602 cgacatcgacacatataattatactgaattatgttattttctcaaatttttagctgtgtcggcgtgtttctgtc 8931675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 529
Target Start/End: Original strand, 26650240 - 26650273
Alignment:
Q  496 tgattacattgaaatatgttattttcttaaatta 529  Q
    |||||||||| |||||||||||||||||||||||    
T  26650240 tgattacattcaaatatgttattttcttaaatta 26650273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 529
Target Start/End: Original strand, 26756208 - 26756241
Alignment:
Q  496 tgattacattgaaatatgttattttcttaaatta 529  Q
    |||||||||| |||||||||||||||||||||||    
T  26756208 tgattacattcaaatatgttattttcttaaatta 26756241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 294
Target Start/End: Original strand, 34073358 - 34073399
Alignment:
Q  253 catattattacactgaattatgtgattttctcacattattag 294  Q
    ||||| |||||||||||||||| |||||||||| ||||||||    
T  34073358 catataattacactgaattatgagattttctcaaattattag 34073399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 10842583 - 10842539
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||| |||||||| |||||||||||||| ||| ||||||||    
T  10842583 acacatatgattacactaaattatgtgattttttcaaattattag 10842539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 19044515 - 19044471
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||| || ||||||||||||||||| |||||| ||||||||    
T  19044515 acacatataataacactgaattatgtgatattctcaaattattag 19044471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 26178689 - 26178733
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||| |||||||| |||||||||||||| ||| ||||||||    
T  26178689 acacatatgattacactaaattatgtgattttatcaaattattag 26178733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 54)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 203 - 294
Target Start/End: Original strand, 12443422 - 12443512
Alignment:
Q  203 aagcactgatacttctcggattaggagtgtctcggtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||| |||||  ||||||||||| |||||||||||||||||| |  ||||||  ||||||||||||||||||||||||||| ||||||||    
T  12443422 aagcacggatacccctcggattaggtgtgtctcggtgtccgaca-cgtcacatacaattacactgaattatgtgattttctcaaattattag 12443512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 202 - 309
Target Start/End: Complemental strand, 13436558 - 13436450
Alignment:
Q  202 gaagcactgatacttctcggattaggagtgt-ctcggtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattaggagttt 300  Q
    ||||||| || ||||||||||||||  |||| ||  |||||||||| |||||||||| |||||||||||||||||||||| || | |||||||| ||| |    
T  13436558 gaagcacggacacttctcggattagtcgtgttctacgtgtccgacaccaacacatataattacactgaattatgtgatttccttaaattattagcagtgt 13436459  T
Q  301 cggtgtgtt 309  Q
    ||| |||||    
T  13436458 cggcgtgtt 13436450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 250 - 350
Target Start/End: Original strand, 17831539 - 17831638
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtctggtgtctgtgtctgtatatgtgcttca 349  Q
    |||||||| |||||||||||| |||||||||||||| ||||||||  || |||| |||| | ||| ||| || |||||||||||||||||  ||||||||    
T  17831539 acacatatgattacactgaataatgtgattttctcaaattattagcggtgtcggcgtgtcagtgt-cgtatccggtgtctgtgtctgtatccgtgcttca 17831637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 20157358 - 20157402
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  20157358 acacatatgattacactgaattatgtgattttctcacattattag 20157402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 250 - 322
Target Start/End: Original strand, 34712391 - 34712463
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtct 322  Q
    |||||||| |||||||| |||||||| ||||||||| |||||||| |||  |||||||||| |||||||||||    
T  34712391 acacatataattacactaaattatgttattttctcaaattattagcagtgacggtgtgttaatgtccgtgtct 34712463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 321
Target Start/End: Complemental strand, 38503371 - 38503300
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtc 321  Q
    |||||||| ||||||||||| ||| ||||||||||| ||||||||  || ||||||||||| ||||||||||    
T  38503371 acacatataattacactgaaatatatgattttctcaaattattagcggtgtcggtgtgttagtgtccgtgtc 38503300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 40181935 - 40181878
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||||| | | |||||| ||||||||||||||||||||||||||| ||||||||    
T  40181935 gtgtccgacaccgatacatataattacactgaattatgtgattttctcaaattattag 40181878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 1864875 - 1864931
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattatta 293  Q
    |||||| ||| | |||||||| ||||||||||||||||||||||||||| |||||||    
T  1864875 gtgtccaacaccgacacatataattacactgaattatgtgattttctcaaattatta 1864931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 6427409 - 6427357
Alignment:
Q  242 cgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    ||||| |||||||||| |||||| |||||||||||||||||||| ||||||||    
T  6427409 cgacaccaacacatataattacattgaattatgtgattttctcaaattattag 6427357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 7918219 - 7918263
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||    
T  7918219 acacatataattacactgaattatgtgattttctcaaattattag 7918263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 483 - 558
Target Start/End: Complemental strand, 14332465 - 14332391
Alignment:
Q  483 acactgacatatatgattacattgaaatatgttattttcttaaattagtatccgtgtcgacatgttagtgtctgtg 558  Q
    |||| ||||||| ||||||||||||| ||||| ||||||| |||||  |||| |||||||| ||||||||||||||    
T  14332465 acaccgacatatgtgattacattgaattatgtcattttctcaaatt-ttatcggtgtcgacttgttagtgtctgtg 14332391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 236 - 283
Target Start/End: Complemental strand, 30749905 - 30749858
Alignment:
Q  236 ggtgtccgacatcaacacatattattacactgaattatgtgattttct 283  Q
    ||||||||||| | |||||||| |||||||||||||||||||||||||    
T  30749905 ggtgtccgacaccgacacatataattacactgaattatgtgattttct 30749858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 236 - 283
Target Start/End: Complemental strand, 30771356 - 30771309
Alignment:
Q  236 ggtgtccgacatcaacacatattattacactgaattatgtgattttct 283  Q
    ||||||||||| | |||||||| |||||||||||||||||||||||||    
T  30771356 ggtgtccgacaccgacacatataattacactgaattatgtgattttct 30771309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 476 - 542
Target Start/End: Complemental strand, 19637832 - 19637766
Alignment:
Q  476 gtgtcagacactgacatatatgattacattgaaatatgttattttcttaaattagtatccgtgtcga 542  Q
    ||||| ||||| |||| ||||||||||||||||  |||| |||||||||||||| |||| |||||||    
T  19637832 gtgtccgacaccgacacatatgattacattgaataatgtcattttcttaaattattatcggtgtcga 19637766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 34298478 - 34298416
Alignment:
Q  259 attacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtc 321  Q
    ||||||||||||||||||||||||||| ||||||||  || ||||||||| | | ||||||||    
T  34298478 attacactgaattatgtgattttctcaaattattagtggtgtcggtgtgtcagtttccgtgtc 34298416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 294
Target Start/End: Complemental strand, 36906050 - 36906004
Alignment:
Q  248 caacacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||||||    
T  36906050 caacacatataattactctgaattatgtgattttctcagattattag 36906004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 323
Target Start/End: Complemental strand, 52903313 - 52903227
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtctg 323  Q
    |||||||||| | |||||||| ||||||||||||||| ||||||| | | |||||||   || |||| |||||| ||||||||||||    
T  52903313 gtgtccgacaccgacacatataattacactgaattatatgattttattaaattattaacggtatcggcgtgttagtgtccgtgtctg 52903227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 9709884 - 9709827
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||||| | |||||||| ||||||  ||||||||||||||||||| ||||||||    
T  9709884 gtgtccgacaccgacacatataattacaacgaattatgtgattttctcaaattattag 9709827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 14332637 - 14332694
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||||| | | |||||| |||||||| |||||||||||||||||| ||||||||    
T  14332637 gtgtccgacaccgagacatataattacactaaattatgtgattttctcaaattattag 14332694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 250 - 291
Target Start/End: Original strand, 25098563 - 25098604
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattat 291  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  25098563 acacatataattacactgaattatgtgattttctcaaattat 25098604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 250 - 291
Target Start/End: Complemental strand, 25361937 - 25361896
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattat 291  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  25361937 acacatataattacactgaattatgtgattttctcaaattat 25361896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 202 - 294
Target Start/End: Original strand, 25452110 - 25452200
Alignment:
Q  202 gaagcactgatacttctcggattaggagtgtctcggtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    ||||||| || ||| |||| |||||| ||||  ||||||| |||| | |||||||  |||||||||||||||| |||||||||| ||||||||    
T  25452110 gaagcacggacactgctcgaattaggcgtgttccggtgtctgacaccgacacata--attacactgaattatgagattttctcaaattattag 25452200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 243 - 308
Target Start/End: Original strand, 27471567 - 27471632
Alignment:
Q  243 gacatcaacacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgt 308  Q
    |||| |||||||| | |||||||||||||||||| |||||||| ||||||||  || |||||||||    
T  27471567 gacaccaacacatgtaattacactgaattatgtgcttttctcaaattattagcggtatcggtgtgt 27471632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 36878525 - 36878468
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    ||||| |||| | |||| ||| ||||||||||||||||||||||||||| ||||||||    
T  36878525 gtgtcagacaccgacacctataattacactgaattatgtgattttctcaaattattag 36878468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 248 - 293
Target Start/End: Complemental strand, 42325613 - 42325568
Alignment:
Q  248 caacacatattattacactgaattatgtgattttctcacattatta 293  Q
    ||||||||||| |||||||||||||||| ||||||||| |||||||    
T  42325613 caacacatattgttacactgaattatgtcattttctcaaattatta 42325568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 250 - 291
Target Start/End: Complemental strand, 44482281 - 44482240
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattat 291  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  44482281 acacatataattacactgaattatgtgattttctcaaattat 44482240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 10233304 - 10233260
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||| |||||||||||||||||||||||||||  |||||||    
T  10233304 acacatataattacactgaattatgtgattttctcaatttattag 10233260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 19324612 - 19324572
Alignment:
Q  251 cacatattattacactgaattatgtgattttctcacattat 291  Q
    ||||||| ||||||||||||||||||||||||||| |||||    
T  19324612 cacatataattacactgaattatgtgattttctcaaattat 19324572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 34371764 - 34371721
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||    
T  34371764 acacatataattacactgaattatgtgattttctca-attattag 34371721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 38075966 - 38076022
Alignment:
Q  238 tgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    ||||||||| | |||||||| |||||||||| ||||||||||| |||| ||||||||    
T  38075966 tgtccgacaccgacacatatgattacactgacttatgtgatttactcaaattattag 38076022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 40285654 - 40285706
Alignment:
Q  242 cgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    ||||||| |||||||| | |||||||||||||| |||||||||| ||||||||    
T  40285654 cgacatcgacacatatgactacactgaattatgcgattttctcaaattattag 40285706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 321
Target Start/End: Original strand, 398773 - 398844
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtc 321  Q
    |||| ||| ||||||||||||||||||||||| ||| ||||||||  || |||| |||| | ||||||||||    
T  398773 acacctataattacactgaattatgtgattttttcaaattattagcggtgtcggcgtgtcagtgtccgtgtc 398844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 320
Target Start/End: Original strand, 2896140 - 2896199
Alignment:
Q  261 tacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgt 320  Q
    ||||||||||||||||||||||||| ||||||||  || |||| |||| | |||||||||    
T  2896140 tacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtccgtgt 2896199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 294
Target Start/End: Complemental strand, 31015085 - 31015050
Alignment:
Q  259 attacactgaattatgtgattttctcacattattag 294  Q
    ||||||||||||||||||||||||||| ||||||||    
T  31015085 attacactgaattatgtgattttctcaaattattag 31015050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 5376517 - 5376579
Alignment:
Q  259 attacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtc 321  Q
    ||||||||||||||||| ||||||| | ||||||||  || |||| |||||| ||||||||||    
T  5376517 attacactgaattatgttattttcttaaattattagcggtgtcggcgtgttagtgtccgtgtc 5376579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 494 - 548
Target Start/End: Original strand, 7988464 - 7988518
Alignment:
Q  494 tatgattacattgaaatatgttattttcttaaattagtatccgtgtcgacatgtt 548  Q
    ||||||||||||||| ||||| | |||||||||||| |||| |||||||| ||||    
T  7988464 tatgattacattgaattatgtcactttcttaaattattatcagtgtcgacgtgtt 7988518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 308
Target Start/End: Original strand, 19562629 - 19562687
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgt 308  Q
    |||||||| ||||||||||| |||| |||||||||| |||||||| ||| |||| ||||    
T  19562629 acacatataattacactgaactatgagattttctcaaattattagcagtgtcggcgtgt 19562687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 476 - 510
Target Start/End: Original strand, 22416469 - 22416503
Alignment:
Q  476 gtgtcagacactgacatatatgattacattgaaat 510  Q
    ||||||||||||||||||| |||||||||||||||    
T  22416469 gtgtcagacactgacatatgtgattacattgaaat 22416503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 35999320 - 35999374
Alignment:
Q  240 tccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||||||||||||| |||| ||| |||||| ||||||||| | ||||||||    
T  35999320 tccgacatcaacacatataattatactaaattatatgattttcttaaattattag 35999374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 293
Target Start/End: Original strand, 2288129 - 2288218
Alignment:
Q  202 gaagcactgatacttctcggattaggagtgtctc-ggtgtccgacatcaacacatattattacactgaattatgtgattttctcacattatta 293  Q
    |||||||||| | | ||||||||||| ||| ||| ||||||||||| | |||||||  |||||| |||||||||||||||||| | |||||||    
T  2288129 gaagcactgacattcctcggattaggcgtg-ctcaggtgtccgacaccgacacata--attacattgaattatgtgattttcttaaattatta 2288218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 356
Target Start/End: Original strand, 3490407 - 3490503
Alignment:
Q  259 attacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtctggtgtctgtgtctgtatatgtgcttcattaaata 356  Q
    |||||||||||| ||||  |||||||| |||||||| ||| |||| |||| | ||| |||||| ||||||||| || ||||  ||||||||| |||||    
T  3490407 attacactgaataatgtagttttctcaaattattagcagtgtcggcgtgtcagtgt-cgtgtccggtgtctgtatccgtatccgtgcttcataaaata 3490503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 294
Target Start/End: Original strand, 5898277 - 5898318
Alignment:
Q  253 catattattacactgaattatgtgattttctcacattattag 294  Q
    ||||| ||||||||||||||||||||||| ||| ||||||||    
T  5898277 catataattacactgaattatgtgattttttcagattattag 5898318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 350
Target Start/End: Original strand, 22881611 - 22881723
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtctggtgtctgtgtctg 336  Q
    |||||||||| | |||| | | |||||||| |||||||||||||| ||| ||||||||  || |||| |||| | ||| |||||| |||||| ||||||     
T  22881611 gtgtccgacaccgacacttgtaattacactaaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgt-cgtgtccggtgtccgtgtcta 22881709  T
Q  337 tatatgtgcttcat 350  Q
    |||  |||||||||    
T  22881710 tatccgtgcttcat 22881723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 350
Target Start/End: Original strand, 38078656 - 38078769
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtctggtgtctgtgtctg 336  Q
    |||||||||| | |||| | | |||||| |||||||||||||||| ||| ||||||||  || |||  |||| | ||| |||||| |||||| ||||| |    
T  38078656 gtgtccgacaccgacacttgtaattacattgaattatgtgattttttcaaattattagctgtgtcgacgtgtcagtgttcgtgtccggtgtccgtgtccg 38078755  T
Q  337 tatatgtgcttcat 350  Q
    |||  |||||||||    
T  38078756 tatccgtgcttcat 38078769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 543
Target Start/End: Complemental strand, 39828325 - 39828268
Alignment:
Q  486 ctgacatatatgattacattgaaatatgttattttcttaaattagtatccgtgtcgac 543  Q
    |||||||||||||||| ||| || ||||||||||||| |||||| |||  ||||||||    
T  39828325 ctgacatatatgattagattaaagtatgttattttctcaaattattattggtgtcgac 39828268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 39953141 - 39953198
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||||| | |||||||  |||||||| |||||||||||||||| | ||||||||    
T  39953141 gtgtccgacaccgacacatacaattacactaaattatgtgattttctaaaattattag 39953198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 1486717 - 1486761
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||| ||| ||||||||||||||||||||||| ||| ||||||||    
T  1486717 acacttataattacactgaattatgtgattttttcaaattattag 1486761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 554
Target Start/End: Original strand, 5376517 - 5376573
Alignment:
Q  498 attacattgaaatatgttattttcttaaattagtatccgtgtcgacatgttagtgtc 554  Q
    |||||| |||| |||||||||||||||||||| || | |||||| | ||||||||||    
T  5376517 attacactgaattatgttattttcttaaattattagcggtgtcggcgtgttagtgtc 5376573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 9828095 - 9828051
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||  ||||||||||||||||||||||| ||| ||||||||    
T  9828095 acacataaaattacactgaattatgtgattttatcaaattattag 9828051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 10572597 - 10572641
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||| | ||||||| ||||||||||||||||||| ||||||||    
T  10572597 acacatttaattacaccgaattatgtgattttctcaaattattag 10572641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 282
Target Start/End: Original strand, 17705594 - 17705626
Alignment:
Q  250 acacatattattacactgaattatgtgattttc 282  Q
    |||||||| ||||||||||||||||||||||||    
T  17705594 acacatataattacactgaattatgtgattttc 17705626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 321
Target Start/End: Original strand, 23636044 - 23636128
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtc 321  Q
    ||||| |||| | |||||||  ||||||||||||||||| ||||||||| ||| || |  ||||||| |||| | ||||||||||    
T  23636044 gtgtctgacaccgacacatacaattacactgaattatgtaattttctcaaatttttggcggtttcggcgtgtcaatgtccgtgtc 23636128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 26238128 - 26238164
Alignment:
Q  258 tattacactgaattatgtgattttctcacattattag 294  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  26238128 tattacactgaattatgttattttctcaaattattag 26238164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 28674864 - 28674808
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattatta 293  Q
    ||||| |||| ||||| |||| |||| |||||||||||| ||||||||| |||||||    
T  28674864 gtgtctgacaccaacatatataattatactgaattatgtaattttctcaaattatta 28674808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 34897149 - 34897092
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||    
T  34897149 gtgtccgacatcgacacatataattacactgaattatgtgattttctcaaattattag 34897092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 308
Target Start/End: Original strand, 13844591 - 13844662
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgt 308  Q
    |||||||||| | |||||||| |||||||| |||||||||||||||||| |||||||| ||| |||| ||||    
T  13844591 gtgtccgacaccgacacatataattacactcaattatgtgattttctcaaattattagcagtgtcggcgtgt 13844662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 240 - 351
Target Start/End: Original strand, 4786336 - 4786446
Alignment:
Q  240 tccgacatcaacacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtctggtgtctgtgtctgtat 339  Q
    ||||||| | |||||||| ||||||||||||||||||||||||| | |||||||   || |||| |||| | ||| |||||  |||||| ||||||||||    
T  4786336 tccgacaccgacacatataattacactgaattatgtgattttcttaaattattaatggtgtcggcgtgtcagtgt-cgtgttcggtgtcagtgtctgtat 4786434  T
Q  340 atgtgcttcatt 351  Q
      ||||||||||    
T  4786435 ccgtgcttcatt 4786446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 202 - 308
Target Start/End: Complemental strand, 27213640 - 27213540
Alignment:
Q  202 gaagcactgatacttctcggattaggagtgtctcggtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattaggagtttc 301  Q
    ||||||| || ||||||||||||||  ||||| ||||||||||||      ||||| |||||| |||||||||||||||||| | |||||||| ||| ||    
T  27213640 gaagcacggacacttctcggattagccgtgtcccggtgtccgaca------catataattacagtgaattatgtgattttctgaaattattagcagtgtc 27213547  T
Q  302 ggtgtgt 308  Q
    || ||||    
T  27213546 ggcgtgt 27213540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 237 - 308
Target Start/End: Original strand, 31236572 - 31236643
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgt 308  Q
    ||||||| || | |||||||| |||||| |||||||||||||||||||| |||||||| ||| |||| ||||    
T  31236572 gtgtccgtcaccgacacatataattacattgaattatgtgattttctcaaattattagcagtgtcggcgtgt 31236643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 462 - 543
Target Start/End: Complemental strand, 1676789 - 1676709
Alignment:
Q  462 tcagacatgtgttggtgtcagacactgacatatatgattacattgaaatatgttattttcttaaattagtatccgtgtcgac 543  Q
    |||||||||||| |||||| ||||| ||||  |||||||||| | |||||||| ||||||  |||||| |||||||||||||    
T  1676789 tcagacatgtgtcggtgtccgacac-gacacctatgattacactaaaatatgtcattttcacaaattattatccgtgtcgac 1676709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 3025615 - 3025558
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    ||||||||||   |||| ||| ||||||||||||||||||||||||||| ||||||||    
T  3025615 gtgtccgacactgacacctataattacactgaattatgtgattttctcaaattattag 3025558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 221 - 294
Target Start/End: Complemental strand, 4948731 - 4948659
Alignment:
Q  221 gattaggagtgtctcggtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    ||||||| |||||||| ||||||||| | |||| | | ||||||||||||||||||||||| ||| ||||||||    
T  4948731 gattaggcgtgtctcg-tgtccgacaccgacacttgtaattacactgaattatgtgattttttcaaattattag 4948659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 248 - 293
Target Start/End: Complemental strand, 11803312 - 11803267
Alignment:
Q  248 caacacatattattacactgaattatgtgattttctcacattatta 293  Q
    |||||||||| ||||||||||||||||||||||||| | |||||||    
T  11803312 caacacatataattacactgaattatgtgattttcttaaattatta 11803267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 476 - 529
Target Start/End: Complemental strand, 12985456 - 12985403
Alignment:
Q  476 gtgtcagacactgacatatatgattacattgaaatatgttattttcttaaatta 529  Q
    ||||| ||||| ||||||||||||||||||||| ||||| ||||||| ||||||    
T  12985456 gtgtccgacaccgacatatatgattacattgaattatgtgattttctcaaatta 12985403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 12985456 - 12985400
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattatta 293  Q
    |||||||||| | ||| |||| |||||| |||||||||||||||||||| |||||||    
T  12985456 gtgtccgacaccgacatatatgattacattgaattatgtgattttctcaaattatta 12985400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 14134746 - 14134706
Alignment:
Q  254 atattattacactgaattatgtgattttctcacattattag 294  Q
    |||| ||||||||||||||||||||||||||| ||||||||    
T  14134746 atataattacactgaattatgtgattttctcaaattattag 14134706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 14731763 - 14731719
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||| |||||||| |||||||||||||||||| ||||||||    
T  14731763 acacatataattacactaaattatgtgattttctcaaattattag 14731719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 24362210 - 24362254
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||| ||||||||||||||||||||| ||||| ||||||||    
T  24362210 acacatataattacactgaattatgtgattctctcaaattattag 24362254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 307
Target Start/End: Complemental strand, 4611583 - 4611528
Alignment:
Q  252 acatattattacactgaattatgtgattttctcacattattaggagtttcggtgtg 307  Q
    |||||| ||||||||||||||||| ||||||||| ||||||||  || ||||||||    
T  4611583 acatataattacactgaattatgttattttctcaaattattagcggtgtcggtgtg 4611528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 293
Target Start/End: Original strand, 11927094 - 11927137
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattatta 293  Q
    |||||||| ||||||||||||||||||||||| ||| |||||||    
T  11927094 acacatataattacactgaattatgtgattttatcaaattatta 11927137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 293
Target Start/End: Complemental strand, 18646239 - 18646180
Alignment:
Q  234 tcggtgtccgacatcaacacatattattacactgaattatgtgattttctcacattatta 293  Q
    ||||||||||||| ||||| |||| |||||||||||| |||| ||||| ||| |||||||    
T  18646239 tcggtgtccgacaccaacatatatgattacactgaatcatgtcattttttcaaattatta 18646180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 294
Target Start/End: Original strand, 37283827 - 37283862
Alignment:
Q  259 attacactgaattatgtgattttctcacattattag 294  Q
    ||||||||||||||||||||||||||| ||||||||    
T  37283827 attacactgaattatgtgattttctcagattattag 37283862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 294
Target Start/End: Original strand, 39954288 - 39954331
Alignment:
Q  251 cacatattattacactgaattatgtgattttctcacattattag 294  Q
    ||||||| |||||||| |||||||||||||||||| ||||||||    
T  39954288 cacatataattacactaaattatgtgattttctcaaattattag 39954331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 321
Target Start/End: Original strand, 926785 - 926867
Alignment:
Q  239 gtccgacatcaacacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtc 321  Q
    |||||||| | |||| ||| |||||||||||  ||| |||||||||| |||||||||||| | || |||| | ||||||||||    
T  926785 gtccgacaccgacacttataattacactgaacaatgagattttctcaaattattaggagtgttggcgtgtcagtgtccgtgtc 926867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 31580124 - 31580178
Alignment:
Q  239 gtccgacatcaacacatattattacactgaattatgtgattttctcacattatta 293  Q
    |||||||||| |||| ||| |||||||| |||||||||||||||| | |||||||    
T  31580124 gtccgacatcgacacctataattacactcaattatgtgattttcttaaattatta 31580178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 493 - 547
Target Start/End: Original strand, 37225755 - 37225809
Alignment:
Q  493 atatgattacattgaaatatgttattttcttaaattagtatccgtgtcgacatgt 547  Q
    |||||||||||||||| ||||||||||||| |||||| |||  |||| |||||||    
T  37225755 atatgattacattgaattatgttattttctcaaattattattggtgtagacatgt 37225809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 283
Target Start/End: Complemental strand, 38079063 - 38079017
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttct 283  Q
    |||||||||||| || ||||| |||||||||||| ||||||||||||    
T  38079063 gtgtccgacatcgacgcatataattacactgaatcatgtgattttct 38079017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 534
Target Start/End: Complemental strand, 3508099 - 3508058
Alignment:
Q  493 atatgattacattgaaatatgttattttcttaaattagtatc 534  Q
    |||||||||||||||| ||||||||||||| |||||| ||||    
T  3508099 atatgattacattgaattatgttattttctcaaattattatc 3508058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 308
Target Start/End: Original strand, 12559107 - 12559171
Alignment:
Q  243 gacatcaacacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgt 308  Q
    |||| ||| |||||| ||||||||||||||| | ||||||||| |||||||| | |||||||||||    
T  12559107 gacaccaatacatatgattacactgaattatatcattttctcaaattattagca-tttcggtgtgt 12559171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 295
Target Start/End: Original strand, 20679403 - 20679448
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattagg 295  Q
    |||| ||| ||||||||||| ||||||||||||||| |||||||||    
T  20679403 acacttataattacactgaactatgtgattttctcaaattattagg 20679448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 283
Target Start/End: Original strand, 26902183 - 26902216
Alignment:
Q  250 acacatattattacactgaattatgtgattttct 283  Q
    |||||||| |||||||||||||||||||||||||    
T  26902183 acacatataattacactgaattatgtgattttct 26902216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 321
Target Start/End: Complemental strand, 36934723 - 36934650
Alignment:
Q  248 caacacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtc 321  Q
    |||||||||| |||||| |||||||||||||||| ||  ||||||||  || |||  |||||| ||||||||||    
T  36934723 caacacatataattacaatgaattatgtgattttttcgaattattagcggtgtcgacgtgttagtgtccgtgtc 36934650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 292
Target Start/End: Complemental strand, 40332233 - 40332200
Alignment:
Q  259 attacactgaattatgtgattttctcacattatt 292  Q
    ||||||||||||||||||||||||||| ||||||    
T  40332233 attacactgaattatgtgattttctcaaattatt 40332200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 7658510 - 7658470
Alignment:
Q  254 atattattacactgaattatgtgattttctcacattattag 294  Q
    |||| ||||||||||||||||| ||||||||| ||||||||    
T  7658510 atataattacactgaattatgtaattttctcaaattattag 7658470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 310
Target Start/End: Complemental strand, 11944716 - 11944656
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgtta 310  Q
    |||||||| |||||||||| |||||||||||| ||| |||||||  ||| |||| ||||||    
T  11944716 acacatataattacactgagttatgtgattttatcaaattattaacagtgtcggcgtgtta 11944656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 12606837 - 12606881
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||| |||||| |||||||| ||||||||||| ||||||||    
T  12606837 acacatataattacattgaattatatgattttctcaaattattag 12606881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 13203688 - 13203648
Alignment:
Q  254 atattattacactgaattatgtgattttctcacattattag 294  Q
    |||| ||||||||||||||||| ||||||||| ||||||||    
T  13203688 atataattacactgaattatgtaattttctcaaattattag 13203648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 18067954 - 18067986
Alignment:
Q  262 acactgaattatgtgattttctcacattattag 294  Q
    |||||||||||||||||||||||| ||||||||    
T  18067954 acactgaattatgtgattttctcaaattattag 18067986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 487 - 539
Target Start/End: Original strand, 26466554 - 26466606
Alignment:
Q  487 tgacatatatgattacattgaaatatgttattttcttaaattagtatccgtgt 539  Q
    |||||||||||||| ||||||| ||| ||||||||| |||||| |||| ||||    
T  26466554 tgacatatatgattgcattgaattatcttattttctcaaattattatcggtgt 26466606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 321
Target Start/End: Original strand, 36450749 - 36450833
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtc 321  Q
    |||||||||| | |||| | | ||||||||||||| ||||||||| ||| ||||||||  || |||| |||| | ||||||||||    
T  36450749 gtgtccgacacctacacttgtaattacactgaattctgtgattttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtc 36450833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 34879414 - 34879357
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||| ||| ||||    
T  34879414 gtgtccgacatcgacacatattattacactgaattatatgattttctcaaatttttag 34879357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 30502383 - 30502440
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||||| | |||||||| |||||||||||||| |||||||||||| ||||||||    
T  30502383 gtgtccgacaccgacacatataattacactgaattaagtgattttctcaaattattag 30502440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 30542726 - 30542783
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||||| | |||||||| |||||||||||||| |||||||||||| ||||||||    
T  30542726 gtgtccgacaccgacacatataattacactgaattaagtgattttctcaaattattag 30542783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 6471897 - 6471941
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||    
T  6471897 acacatataattacactgaattatgtgattttctcaaattattag 6471941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 28588669 - 28588725
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattatta 293  Q
    |||||||||| | |||| ||| ||||||||||||||||||||||||||| |||||||    
T  28588669 gtgtccgacaccgacacctataattacactgaattatgtgattttctcaaattatta 28588725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 41091257 - 41091309
Alignment:
Q  242 cgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    ||||||| |||||||| ||||||||||||||||||||||||||| || |||||    
T  41091257 cgacatcgacacatataattacactgaattatgtgattttctcaaatcattag 41091309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 202 - 294
Target Start/End: Complemental strand, 6247725 - 6247629
Alignment:
Q  202 gaagcactgatacttctcggattaggagtgtctcg----gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    ||||||| || ||||||||||||||| ||||| ||    |||||||||| | |||| | | ||||||||||||||||||||||| ||| ||||||||    
T  6247725 gaagcacagacacttctcggattaggtgtgtcccgtgccgtgtccgacaccgacacttgtaattacactgaattatgtgattttttcaaattattag 6247629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 17925166 - 17925223
Alignment:
Q  236 ggtgtccgacatcaacacatattattacactgaattatgtgattttctcacattatta 293  Q
    ||||| ||||| | ||||||||||||||| |||||||||||||||||| | |||||||    
T  17925166 ggtgttcgacaccgacacatattattacattgaattatgtgattttcttaaattatta 17925223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 21576740 - 21576797
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||||||| |||| | | ||||||||||||||||||||||| ||| ||||||||    
T  21576740 gtgtccgacatcgacacttgtaattacactgaattatgtgattttttcaaattattag 21576797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 496 - 529
Target Start/End: Complemental strand, 28136709 - 28136676
Alignment:
Q  496 tgattacattgaaatatgttattttcttaaatta 529  Q
    ||||||||||||||||||||||||||||||||||    
T  28136709 tgattacattgaaatatgttattttcttaaatta 28136676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 3966554 - 3966510
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||| ||||||||||||| ||||||||||||| ||||||||    
T  3966554 acacatataattacactgaattgtgtgattttctcaaattattag 3966510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 323
Target Start/End: Complemental strand, 2548452 - 2548366
Alignment:
Q  236 ggtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtctg 323  Q
    ||||||||||| | |||| ||| ||||||||||||||||| ||||||||  |||||||   |||| | ||||||| ||||||||||||    
T  2548452 ggtgtccgacaccgacacttatgattacactgaattatgtaattttctctaattattatcggttttgatgtgtta-tgtccgtgtctg 2548366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 494 - 541
Target Start/End: Original strand, 18607110 - 18607157
Alignment:
Q  494 tatgattacattgaaatatgttattttcttaaattagtatccgtgtcg 541  Q
    ||||||||||||||| ||||||||||||| |||||| ||||| |||||    
T  18607110 tatgattacattgaattatgttattttctcaaattattatccatgtcg 18607157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 290
Target Start/End: Original strand, 24273039 - 24273078
Alignment:
Q  251 cacatattattacactgaattatgtgattttctcacatta 290  Q
    ||||||| ||||||||||||||||||||||||||| ||||    
T  24273039 cacatataattacactgaattatgtgattttctcaaatta 24273078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 290
Target Start/End: Complemental strand, 24389175 - 24389136
Alignment:
Q  251 cacatattattacactgaattatgtgattttctcacatta 290  Q
    ||||||| ||||||||||||||||||||||||||| ||||    
T  24389175 cacatataattacactgaattatgtgattttctcaaatta 24389136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 308
Target Start/End: Complemental strand, 35017085 - 35017030
Alignment:
Q  253 catattattacactgaattatgtgattttctcacattattaggagtttcggtgtgt 308  Q
    ||||| |||||||| |||||||||||||||||| ||||||||  ||||||| ||||    
T  35017085 catataattacactaaattatgtgattttctcaaattattagtggtttcggcgtgt 35017030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 294
Target Start/End: Original strand, 17593728 - 17593774
Alignment:
Q  248 caacacatattattacactgaattatgtgattttctcacattattag 294  Q
    ||||| |||| |||||||||||||| |||||||||||| ||||||||    
T  17593728 caacatatataattacactgaattacgtgattttctcaaattattag 17593774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 18421836 - 18421890
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattat 291  Q
    |||||||||  | |||||||| ||||||||| ||||||||||||||||| |||||    
T  18421836 gtgtccgacgccgacacatataattacactggattatgtgattttctcaaattat 18421890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 323
Target Start/End: Original strand, 19168829 - 19168902
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtctg 323  Q
    |||||||| |||||||||||| |||||||||| ||| |||| |||  || | ||||||| | ||||||||||||    
T  19168829 acacatatgattacactgaataatgtgattttatcaaattaatagcggtgtaggtgtgtcagtgtccgtgtctg 19168902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 21191051 - 21191108
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||||| | |||| | | ||||||||||||||||||||||| ||| ||||||||    
T  21191051 gtgtccgacaccgacacttgtaattacactgaattatgtgattttttcaaattattag 21191108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 290
Target Start/End: Original strand, 21194200 - 21194253
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacatta 290  Q
    ||||||||||  |||||  || ||||||||||||||||||||||||||| ||||    
T  21194200 gtgtccgacactaacaccaatgattacactgaattatgtgattttctcaaatta 21194253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 23015991 - 23016032
Alignment:
Q  244 acatcaacacatattattacactgaattatgtgattttctca 285  Q
    ||||| |||| ||| |||||||||||||||||||||||||||    
T  23015991 acatcgacacctataattacactgaattatgtgattttctca 23016032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 283
Target Start/End: Complemental strand, 39758323 - 39758290
Alignment:
Q  250 acacatattattacactgaattatgtgattttct 283  Q
    |||||||| |||||||||||||||||||||||||    
T  39758323 acacatataattacactgaattatgtgattttct 39758290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 290
Target Start/End: Original strand, 6326257 - 6326345
Alignment:
Q  202 gaagcactgatacttctcggattaggagtgtctcggtgtccgacatcaacacatattattacactgaattatgtgattttctcacatta 290  Q
    ||||||| || |||||||| |||||| ||||  |||||||||||    |||| | | ||||||||||||||||| ||||||||| ||||    
T  6326257 gaagcacggacacttctcgaattaggcgtgttccggtgtccgacgctgacacttgtaattacactgaattatgtaattttctcaaatta 6326345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 6770583 - 6770523
Alignment:
Q  261 tacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtc 321  Q
    ||||||||||||||||||||||| | ||||||||  || || |||||| | ||||||||||    
T  6770583 tacactgaattatgtgattttcttaaattattagttgtgtcagtgtgtcagtgtccgtgtc 6770523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 14422966 - 14422922
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgatttt 281  Q
    |||||||||||| | || ||| |||||||||||||||||||||||    
T  14422966 gtgtccgacatcgaaacttataattacactgaattatgtgatttt 14422922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 259 - 323
Target Start/End: Complemental strand, 14674311 - 14674247
Alignment:
Q  259 attacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtctg 323  Q
    |||||||| |||||||||||||| ||| ||||||||  || |||| |||| | ||||||||||||    
T  14674311 attacactaaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtctg 14674247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 259 - 291
Target Start/End: Complemental strand, 19438385 - 19438353
Alignment:
Q  259 attacactgaattatgtgattttctcacattat 291  Q
    ||||||||||||||||||||||||||| |||||    
T  19438385 attacactgaattatgtgattttctcaaattat 19438353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 27144514 - 27144470
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||| |||||||| ||||||||||||| |||| ||||||||    
T  27144514 acacatataattacactaaattatgtgatttcctcaaattattag 27144470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 39205939 - 39205887
Alignment:
Q  242 cgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    ||||| |||||||||| |||||||  |||||| ||||||||||| ||||||||    
T  39205939 cgacaccaacacatataattacacctaattatatgattttctcaaattattag 39205887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 539
Target Start/End: Original strand, 43208276 - 43208332
Alignment:
Q  483 acactgacatatatgattacattgaaatatgttattttcttaaattagtatccgtgt 539  Q
    |||| |||| |||||||||||||||| ||||| ||||||| |||||| |||| ||||    
T  43208276 acacagacagatatgattacattgaattatgtcattttctcaaattactatcggtgt 43208332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 350
Target Start/End: Complemental strand, 23718077 - 23717979
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtctggtgtctgtgtctgtatatgtgcttca 349  Q
    |||||||| ||||||||||||||||||| ||||||| ||||||||  || ||||||||| | ||||||||||   |||| ||||||||||  ||||||||    
T  23718077 acacatataattacactgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtc--atgtccgtgtctgtatccgtgcttca 23717980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 350
Target Start/End: Complemental strand, 24105749 - 24105651
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtctggtgtctgtgtctgtatatgtgcttca 349  Q
    |||||||| ||||||||||||||||||| ||||||| ||||||||  || ||||||||| | ||||||||||   |||| ||||||||||  ||||||||    
T  24105749 acacatataattacactgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtc--atgtccgtgtctgtatccgtgcttca 24105652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 350
Target Start/End: Original strand, 21374716 - 21374807
Alignment:
Q  259 attacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtctggtgtctgtgtctgtatatgtgcttcat 350  Q
    ||||||||||||||||| ||||| ||| ||||||||  || |||| |||||| |||||||||| |||||| ||||| ||||  |||||||||    
T  21374716 attacactgaattatgtaattttttcaaattattagctgtgtcggcgtgttagtgtccgtgtccggtgtccgtgtccgtatccgtgcttcat 21374807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 5367256 - 5367199
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||||| | |||||||| |||||||||||||||||||||| |||| ||||||||    
T  5367256 gtgtccgacaccgacacatataattacactgaattatgtgatttcctcaaattattag 5367199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 482 - 543
Target Start/End: Complemental strand, 31026753 - 31026692
Alignment:
Q  482 gacactgacatatatgattacattgaaatatgttattttcttaaattagtatccgtgtcgac 543  Q
    ||||| ||||||||||||||||||||| ||||| |||||||||||||| |||| || |||||    
T  31026753 gacaccgacatatatgattacattgaattatgtcattttcttaaattattatcggtctcgac 31026692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 37411239 - 37411296
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||| ||||||| |||||||| || |||||||||||||||||||||||| ||||||||    
T  37411239 gtgttcgacatcgacacatataatcacactgaattatgtgattttctcaaattattag 37411296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 21616813 - 21616769
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||    
T  21616813 acacatataattacactgaattatgtgattttctcaaattattag 21616769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 1254288 - 1254245
Alignment:
Q  18 tgttcttggttgcaaatttgtttgttctgctgttaacaaggtac 61  Q
    ||||||||| |||||||||||||||||| |||||||||||||||    
T  1254288 tgttcttggctgcaaatttgtttgttcttctgttaacaaggtac 1254245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 480 - 562
Target Start/End: Original strand, 37402083 - 37402166
Alignment:
Q  480 cagacactgacatatatgattacattgaaatatgtta-ttttcttaaattagtatccgtgtcgacatgttagtgtctgtgctgc 562  Q
    |||||||||||| |||||||||||||||| ||||| | |||| ||||||||  ||| |||||||  |||| |||||||||||||    
T  37402083 cagacactgacacatatgattacattgaattatgtcattttttttaaattataatcggtgtcgatttgttcgtgtctgtgctgc 37402166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 544
Target Start/End: Complemental strand, 18571030 - 18570968
Alignment:
Q  482 gacactgacatatatgattacattgaaatatgttattttcttaaattagtatccgtgtcgaca 544  Q
    |||||||||| |||||||||||||||| ||||| ||||||| |||||| |||| |||| ||||    
T  18571030 gacactgacacatatgattacattgaattatgtcattttctcaaattattatcggtgttgaca 18570968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 283
Target Start/End: Original strand, 20242722 - 20242768
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttct 283  Q
    |||||||||| | |||||||| |||||||||||||||||||||||||    
T  20242722 gtgtccgacaccgacacatataattacactgaattatgtgattttct 20242768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 465 - 522
Target Start/End: Complemental strand, 896286 - 896229
Alignment:
Q  465 gacatgtgttggtgtcagacactgacatatatgattacattgaaatatgttattttct 522  Q
    |||||| ||||||||| ||| | |||| |||||||||||||||||||||| |||||||    
T  896286 gacatgcgttggtgtccgacgccgacacatatgattacattgaaatatgtgattttct 896229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 259 - 308
Target Start/End: Original strand, 21782835 - 21782884
Alignment:
Q  259 attacactgaattatgtgattttctcacattattaggagtttcggtgtgt 308  Q
    ||||||||||||||||||||||||||| |||||||| ||| |||| ||||    
T  21782835 attacactgaattatgtgattttctcaaattattagcagtgtcggcgtgt 21782884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 34691800 - 34691857
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||||| | |||||||| ||||||||||||||| ||||||| ||| ||||||||    
T  34691800 gtgtccgacaccgacacatataattacactgaattatatgattttatcaaattattag 34691857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 34714212 - 34714269
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||||| | |||||||| ||||||||||||||| ||||||| ||| ||||||||    
T  34714212 gtgtccgacaccgacacatataattacactgaattatatgattttatcaaattattag 34714269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 5473392 - 5473336
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattatta 293  Q
    |||||||||| | ||||||| |||||||| ||||||||||||||| ||| |||||||    
T  5473392 gtgtccgacaccgacacataatattacaccgaattatgtgattttttcaaattatta 5473336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 18889599 - 18889643
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||| |||||||||||||||||||||||||||  |||||||    
T  18889599 acacatatgattacactgaattatgtgattttctcaatttattag 18889643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 29970549 - 29970601
Alignment:
Q  242 cgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    ||||||| |||||||| ||||||||||| |||| |||||||||| ||||||||    
T  29970549 cgacatcgacacatatgattacactgaactatgcgattttctcaaattattag 29970601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 308
Target Start/End: Original strand, 42832254 - 42832342
Alignment:
Q  220 ggattaggagtgtctcggtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgt 308  Q
    |||||||| ||||| ||| ||| |||| | |||| ||| ||||||||||| ||||| ||||||||| ||||||||  || |||||||||    
T  42832254 ggattaggcgtgtcccggagtcggacaccgacacttataattacactgaaatatgtaattttctcaaattattagcggtgtcggtgtgt 42832342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 44860371 - 44860327
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||| |||||||||||||||| |||||||||| ||||||||    
T  44860371 acacatataattacactgaattatgcgattttctcaaattattag 44860327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 293
Target Start/End: Complemental strand, 12748754 - 12748692
Alignment:
Q  230 tgtctcggtgtccgacatcaacacatattattacactgaattatgtgattttctcacattatta 293  Q
    |||| |||||||||||| |||||| ||| ||||||||||| ||||| ||||||||| |||||||    
T  12748754 tgtcccggtgtccgaca-caacacctatgattacactgaactatgtcattttctcaaattatta 12748692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 285
Target Start/End: Original strand, 32749833 - 32749868
Alignment:
Q  250 acacatattattacactgaattatgtgattttctca 285  Q
    |||| |||||||||||||||||||||||||||||||    
T  32749833 acacttattattacactgaattatgtgattttctca 32749868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 293
Target Start/End: Complemental strand, 35449564 - 35449521
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattatta 293  Q
    |||||||| ||||||||||||| ||||||||||||| |||||||    
T  35449564 acacatataattacactgaattctgtgattttctcaaattatta 35449521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 293
Target Start/End: Complemental strand, 39279726 - 39279683
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattatta 293  Q
    |||||||| ||||||||||||||| ||||||||||| |||||||    
T  39279726 acacatataattacactgaattatttgattttctcatattatta 39279683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 293
Target Start/End: Complemental strand, 23921319 - 23921261
Alignment:
Q  235 cggtgtccgacatcaacacatattattacactgaattatgtgattttctcacattatta 293  Q
    |||||||||||| ||| |  ||| ||||||||||||||||| ||||||||| |||||||    
T  23921319 cggtgtccgacaccaatatttataattacactgaattatgtaattttctcaaattatta 23921261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 294
Target Start/End: Complemental strand, 28677958 - 28677916
Alignment:
Q  252 acatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||| ||||||||||||||||||||||| ||| ||||||||    
T  28677958 acatataattacactgaattatgtgattttttcaaattattag 28677916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 462 - 543
Target Start/End: Original strand, 30298430 - 30298509
Alignment:
Q  462 tcagacatgtgttggtgtcagacactgacatatatgattacattgaaatatgttattttcttaaattagtatccgtgtcgac 543  Q
    |||||||||||| |||||| ||||| |||  | ||||||||| |||| ||||| ||||| |||||||| |||| ||||||||    
T  30298430 tcagacatgtgtgggtgtccgacaccgac--acatgattacactgaattatgtcattttattaaattattatcggtgtcgac 30298509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 308
Target Start/End: Complemental strand, 31808128 - 31808070
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgt 308  Q
    |||||||| ||||||||||||||||||||||| | | ||||||||  || |||||||||    
T  31808128 acacatataattacactgaattatgtgattttgttaaattattagcggtgtcggtgtgt 31808070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 293
Target Start/End: Complemental strand, 36281734 - 36281693
Alignment:
Q  252 acatattattacactgaattatgtgattttctcacattatta 293  Q
    |||||| |||||||| |||||||||||||||||| |||||||    
T  36281734 acatatgattacactaaattatgtgattttctcaaattatta 36281693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 308
Target Start/End: Complemental strand, 896276 - 896204
Alignment:
Q  236 ggtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgt 308  Q
    ||||||||||  | |||||||| |||||| |||| ||||||||||||||| | |||||| ||| |||| ||||    
T  896276 ggtgtccgacgccgacacatatgattacattgaaatatgtgattttctcaaactattagcagtgtcggcgtgt 896204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 293
Target Start/End: Complemental strand, 2331834 - 2331802
Alignment:
Q  261 tacactgaattatgtgattttctcacattatta 293  Q
    ||||||||||||||||||||||||| |||||||    
T  2331834 tacactgaattatgtgattttctcaaattatta 2331802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 539
Target Start/End: Complemental strand, 16630852 - 16630796
Alignment:
Q  483 acactgacatatatgattacattgaaatatgttattttcttaaattagtatccgtgt 539  Q
    ||||||||| || |||||| |||||| ||||| |||||||||||||| |||| ||||    
T  16630852 acactgacacatgtgattaaattgaattatgtcattttcttaaattattatcggtgt 16630796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 18276572 - 18276528
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    ||||| || |||||||||||||| |||||||||||| ||||||||    
T  18276572 acacacataattacactgaattaagtgattttctcaaattattag 18276528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 18622665 - 18622613
Alignment:
Q  242 cgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    ||||| |||||| ||| ||||||||||||||||||||||| | | ||||||||    
T  18622665 cgacaccaacacgtataattacactgaattatgtgattttattaaattattag 18622613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 30471089 - 30471041
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattaggagt 298  Q
    |||||||| ||||||  ||||||||||||||||||| | ||||||||||    
T  30471089 acacatataattacatcgaattatgtgattttctcaaaatattaggagt 30471041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 30717530 - 30717582
Alignment:
Q  242 cgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    ||||||| |||| | | ||||||||||||||||||||||| ||| ||||||||    
T  30717530 cgacatcgacacttgtaattacactgaattatgtgattttttcaaattattag 30717582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 542
Target Start/End: Complemental strand, 37497194 - 37497118
Alignment:
Q  466 acatgtgttggtgtcagacactgacatatatgattacattgaaatatgttattttcttaaattagtatccgtgtcga 542  Q
    |||||||| |||||| ||||| |||| |||| ||||||||||| | ||  ||||||| |||||| |||| |||||||    
T  37497194 acatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagtgtcga 37497118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 309
Target Start/End: Original strand, 135320 - 135379
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgtt 309  Q
    |||||||| ||||||| ||||||||||||||||||| |||||||| ||| ||||||||||    
T  135320 acacatataattacacagaattatgtgattttctcaaattattagcagtgtcggtgtgtt 135379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 308
Target Start/End: Complemental strand, 20549855 - 20549784
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgt 308  Q
    |||||||||| | |||||||| |||||||||||||| |||||||||||| ||||||||  || |||||||||    
T  20549855 gtgtccgacaccgacacatataattacactgaattacgtgattttctcaaattattagcggtgtcggtgtgt 20549784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 259 - 320
Target Start/End: Original strand, 29787386 - 29787447
Alignment:
Q  259 attacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgt 320  Q
    ||||||||||||||||||||||||||| ||||||||  || |||| |||||| |||||||||    
T  29787386 attacactgaattatgtgattttctcaaattattagcggtgtcggcgtgttaatgtccgtgt 29787447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 22868093 - 22868049
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||    
T  22868093 acacatataattacactgaattatgtgattttctcatattattag 22868049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 3721157 - 3721100
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||||| | |||||||| |||| ||| |||||||||||||||||| ||||||||    
T  3721157 gtgtccgacaccgacacatataattatactaaattatgtgattttctcaaattattag 3721100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 25481966 - 25481909
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||||| |||||| | | ||||||||||||||||||||||| ||| ||||||||    
T  25481966 gtgtccgacaccaacacttgtaattacactgaattatgtgattttttcaaattattag 25481909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 6630912 - 6630964
Alignment:
Q  242 cgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    ||||||| |||||||| |||||||||||||| |||| ||||||| ||||||||    
T  6630912 cgacatcgacacatataattacactgaattaagtgactttctcaaattattag 6630964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 9482996 - 9482944
Alignment:
Q  239 gtccgacatcaacacatattattacactgaattatgtgattttctcacattat 291  Q
    |||||||| | |||||||| ||||||||||||| ||||||||||||| |||||    
T  9482996 gtccgacaccgacacatataattacactgaattgtgtgattttctcaaattat 9482944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 17307952 - 17307904
Alignment:
Q  242 cgacatcaacacatattattacactgaattatgtgattttctcacatta 290  Q
    ||||| |||||||||| ||||||||||||||||| ||||||||| ||||    
T  17307952 cgacaccaacacatataattacactgaattatgttattttctcaaatta 17307904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 17851482 - 17851438
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||| ||||||||||||||||||||||||| | ||||||||    
T  17851482 acacatataattacactgaattatgtgattttctaaaattattag 17851438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 32287459 - 32287515
Alignment:
Q  238 tgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    ||||||||| | ||||||||  || ||||||||||||||||||||||| ||||||||    
T  32287459 tgtccgacaccgacacatatacttgcactgaattatgtgattttctcagattattag 32287515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 32308171 - 32308127
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||  ||||||||||||||||||||||||||| ||||||||    
T  32308171 acacatacaattacactgaattatgtgattttctcaaattattag 32308127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 294
Target Start/End: Complemental strand, 2424656 - 2424621
Alignment:
Q  259 attacactgaattatgtgattttctcacattattag 294  Q
    ||||||||||||||||||||||||||| ||||||||    
T  2424656 attacactgaattatgtgattttctcaaattattag 2424621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 539
Target Start/End: Complemental strand, 12278922 - 12278836
Alignment:
Q  452 tgtcccagtttcagacatgtgttggtgtcagacactgacatatatgattacattgaaatatgttattttcttaaattagtatccgtgt 539  Q
    |||||| || ||||||| | ||||||||| ||||| |||| |||| |||||| |||| ||||| |||||||||||||| |||| ||||    
T  12278922 tgtcccggtgtcagacacgcgttggtgtccgacac-gacacatataattacactgaattatgtcattttcttaaattattatcagtgt 12278836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 321
Target Start/End: Complemental strand, 19206101 - 19206030
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtc 321  Q
    |||||||| |||| | |||||||||||||||||||| ||||||||  || |||| |||||  ||||||||||    
T  19206101 acacatataattataatgaattatgtgattttctcaaattattagcggtgtcggcgtgttggtgtccgtgtc 19206030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 285
Target Start/End: Original strand, 22602718 - 22602753
Alignment:
Q  250 acacatattattacactgaattatgtgattttctca 285  Q
    |||||||| |||||||||||||||||||||||||||    
T  22602718 acacatataattacactgaattatgtgattttctca 22602753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 35297672 - 35297723
Alignment:
Q  242 cgacatcaacacatattattacactgaattatgtgattttctcacattatta 293  Q
    ||||| |||||||||| |||| | |||||||||||||||||||| |||||||    
T  35297672 cgacaccaacacatataattataatgaattatgtgattttctcaaattatta 35297723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 488 - 547
Target Start/End: Original strand, 38134413 - 38134472
Alignment:
Q  488 gacatatatgattacattgaaatatgttattttcttaaattagtatccgtgtcgacatgt 547  Q
    |||| |||||||||||||||| ||||| ||||||| |||||| |||| ||||| ||||||    
T  38134413 gacacatatgattacattgaattatgtcattttctcaaattattatcggtgtcaacatgt 38134472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 540
Target Start/End: Complemental strand, 3095491 - 3095433
Alignment:
Q  482 gacactgacatatatgattacattgaaatatgttattttcttaaattagtatccgtgtc 540  Q
    ||||| |||||||||||||| ||| |||||||  ||||| |||||||| ||||||||||    
T  3095491 gacaccgacatatatgattatattcaaatatgccatttttttaaattactatccgtgtc 3095433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 293
Target Start/End: Complemental strand, 16341546 - 16341504
Alignment:
Q  251 cacatattattacactgaattatgtgattttctcacattatta 293  Q
    ||||||| |||||||| |||||||||||||||||| |||||||    
T  16341546 cacatataattacacttaattatgtgattttctcaaattatta 16341504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 283
Target Start/End: Original strand, 18213028 - 18213074
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttct 283  Q
    |||||||||| | |||||||| |||||||| ||||||||||||||||    
T  18213028 gtgtccgacaccgacacatataattacactaaattatgtgattttct 18213074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 315
Target Start/End: Complemental strand, 21826337 - 21826259
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtc 315  Q
    |||||||||| | ||||||||||||| ||||| |||||||||||| | | ||||||||  || |||| |||||| ||||    
T  21826337 gtgtccgacaccgacacatattattagactgagttatgtgatttttttaaattattagtcgtgtcggcgtgttagtgtc 21826259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 551
Target Start/End: Complemental strand, 23948451 - 23948381
Alignment:
Q  481 agacactgacatatatgattacattgaaatatgttattttcttaaattagtatccgtgtcgacatgttagt 551  Q
    ||||||||||| ||||||||||||| || ||  | ||||| | |||||| |||| ||||||||||||||||    
T  23948451 agacactgacacatatgattacattcaattaattgattttttcaaattattatcagtgtcgacatgttagt 23948381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 27945083 - 27945021
Alignment:
Q  259 attacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtc 321  Q
    ||||||||||||||||| ||||||||| ||||||||  || |||| |||| | ||||||||||    
T  27945083 attacactgaattatgtaattttctcaaattattagtggtgtcggcgtgtcagtgtccgtgtc 27945021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 294
Target Start/End: Complemental strand, 28155651 - 28155577
Alignment:
Q  220 ggattaggagtgtctcggtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||| |||||  ||||||||||| | |||| | | ||||||| ||||||||| ||||||||| ||||||||    
T  28155651 ggattaggcgtgtcctggtgtccgacaccgacacttgtaattacaccgaattatgtaattttctcaaattattag 28155577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 283
Target Start/End: Complemental strand, 39138508 - 39138462
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttct 283  Q
    |||||||||| | ||| |||| |||||||||||||||||||||||||    
T  39138508 gtgtccgacaccgacatatataattacactgaattatgtgattttct 39138462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 529
Target Start/End: Complemental strand, 4909215 - 4909162
Alignment:
Q  476 gtgtcagacactgacatatatgattacattgaaatatgttattttcttaaatta 529  Q
    ||||| |||||||||| ||||||||||| |||| ||||| ||||||| ||||||    
T  4909215 gtgtccgacactgacacatatgattacaatgaattatgtaattttctcaaatta 4909162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 293
Target Start/End: Complemental strand, 5233682 - 5233637
Alignment:
Q  248 caacacatattattacactgaattatgtgattttctcacattatta 293  Q
    |||||||||| ||||||||  ||||||||||||||||| |||||||    
T  5233682 caacacatataattacactagattatgtgattttctcaaattatta 5233637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 291
Target Start/End: Complemental strand, 5548727 - 5548686
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattat 291  Q
    |||||||| ||||||||||||||| ||||||||||| |||||    
T  5548727 acacatataattacactgaattatttgattttctcaaattat 5548686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 12278899 - 12278843
Alignment:
Q  236 ggtgtccgacatcaacacatattattacactgaattatgtgattttctcacattatta 293  Q
    ||||||||||| | |||||||| ||||||||||||||||| ||||||| | |||||||    
T  12278899 ggtgtccgaca-cgacacatataattacactgaattatgtcattttcttaaattatta 12278843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 21880216 - 21880159
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||||| | |||| | | ||||||||||||||||| ||||||||| ||||||||    
T  21880216 gtgtccgacaccgacacttgtaattacactgaattatgtaattttctcaaattattag 21880159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 26733368 - 26733311
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||||| | |||||| | |||| |||||||||||||||||| ||| ||||||||    
T  26733368 gtgtccgacaccgacacatttaattagactgaattatgtgattttgtcaaattattag 26733311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 292
Target Start/End: Complemental strand, 30731079 - 30731046
Alignment:
Q  259 attacactgaattatgtgattttctcacattatt 292  Q
    ||||||||||||||||||||||||||| ||||||    
T  30731079 attacactgaattatgtgattttctcaaattatt 30731046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 5835298 - 5835254
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||| ||||||||||||||||| ||||||||| | ||||||    
T  5835298 acacatataattacactgaattatgttattttctcaaactattag 5835254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 321
Target Start/End: Original strand, 8842354 - 8842414
Alignment:
Q  261 tacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtc 321  Q
    ||||| |||| |||||||||||||| ||| |||| ||| ||||||| ||| ||||||||||    
T  8842354 tacacagaatcatgtgattttctcaaattcttagcagtgtcggtgtattagtgtccgtgtc 8842414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 19992052 - 19992008
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||| ||| ||||||||||| ||||||||||||||| ||||||||    
T  19992052 acacttataattacactgaaatatgtgattttctcaaattattag 19992008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 23747007 - 23746967
Alignment:
Q  213 acttctcggattaggagtgtctcggtgtccgacatcaacac 253  Q
    ||||||||||||||| |||||||| ||||||||| ||||||    
T  23747007 acttctcggattaggcgtgtctcgatgtccgacaccaacac 23746967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 542
Target Start/End: Complemental strand, 23930265 - 23930217
Alignment:
Q  494 tatgattacattgaaatatgttattttcttaaattagtatccgtgtcga 542  Q
    |||||||||| |||| ||||| ||||||| |||||| ||||||||||||    
T  23930265 tatgattacactgaattatgtcattttctcaaattactatccgtgtcga 23930217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 529
Target Start/End: Original strand, 36314639 - 36314675
Alignment:
Q  493 atatgattacattgaaatatgttattttcttaaatta 529  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  36314639 atatgattacattgaaatatgtcattttctcaaatta 36314675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 38143287 - 38143231
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattatta 293  Q
    ||||| |||| |||||||||| |||||| | |||||||||||||| ||| |||||||    
T  38143287 gtgtctgacaccaacacatataattacattaaattatgtgattttttcaaattatta 38143231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 499 - 547
Target Start/End: Complemental strand, 41360951 - 41360903
Alignment:
Q  499 ttacattgaaatatgttattttcttaaattagtatccgtgtcgacatgt 547  Q
    |||||||||| ||||||||||||| |||||| |||| ||||| ||||||    
T  41360951 ttacattgaattatgttattttctcaaattaatatcagtgtccacatgt 41360903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 16192750 - 16192801
Alignment:
Q  242 cgacatcaacacatattattacactgaattatgtgattttctcacattatta 293  Q
    |||||||||||||||| ||||||||||||||||| ||||||||| |||||||    
T  16192750 cgacatcaacacatataattacactgaattatgttattttctcaaattatta 16192801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 7928514 - 7928457
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||||| | |||||||| ||||||||||||||||||||||| ||| ||||||||    
T  7928514 gtgtccgacaccgacacatataattacactgaattatgtgattttttcaaattattag 7928457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 11313807 - 11313864
Alignment:
Q  249 aacacatattattacactgaattatgtgattttctcacattattaggagtttcggtgt 306  Q
    ||||||||| |||||||| |||||||||||||||||| |||||||| ||| |||||||    
T  11313807 aacacatataattacactaaattatgtgattttctcaaattattagcagtgtcggtgt 11313864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 294
Target Start/End: Original strand, 11493372 - 11493413
Alignment:
Q  253 catattattacactgaattatgtgattttctcacattattag 294  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  11493372 catataattacactgaattatgtgattttctcacattattag 11493413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 45451617 - 45451560
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||||| | ||||||||||||| |||||| ||||||||||||||| ||||||||    
T  45451617 gtgtccgacaccgacacatattattatactgaagtatgtgattttctcaaattattag 45451560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 321
Target Start/End: Complemental strand, 8383321 - 8383237
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtc 321  Q
    |||||||||| | |||| ||| ||||||||||||||| ||||||||||| ||||||||  || |||| |||| | ||||||||||    
T  8383321 gtgtccgacaccgacacttataattacactgaattatatgattttctcaaattattagcggtgtcggcgtgtcaatgtccgtgtc 8383237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 321
Target Start/End: Complemental strand, 25093566 - 25093482
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtc 321  Q
    |||||||||| | |||||||| ||||||||||||| ||||||||||||| || ||||  ||| |||| |||||| |||| |||||    
T  25093566 gtgtccgacaccgacacatataattacactgaattgtgtgattttctcaaatcattaacagtgtcggcgtgttagtgtcagtgtc 25093482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 237 - 308
Target Start/End: Original strand, 8789545 - 8789616
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgt 308  Q
    |||||||||| | |||||||| ||||||| ||||||||||||||||||| ||||| ||  || |||||||||    
T  8789545 gtgtccgacaccgacacatataattacacggaattatgtgattttctcaaattataagccgtgtcggtgtgt 8789616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 244 - 323
Target Start/End: Complemental strand, 29508501 - 29508422
Alignment:
Q  244 acatcaacacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtctg 323  Q
    ||||| |||||||| ||||||||||||||| ||||||| ||| ||||||||  || ||||||||| | ||||| ||||||    
T  29508501 acatcgacacatataattacactgaattatatgattttttcaaattattagtggtatcggtgtgtcaatgtccatgtctg 29508422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 283
Target Start/End: Complemental strand, 13414557 - 13414487
Alignment:
Q  213 acttctcggattaggagtgtctcggtgtccgacatcaacacatattattacactgaattatgtgattttct 283  Q
    ||||||||||| ||| ||||| | |||||||||| | |||||||| |||||| |||||||| |||||||||    
T  13414557 acttctcggataaggcgtgtccctgtgtccgacaccgacacatataattacattgaattatttgattttct 13414487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 323
Target Start/End: Original strand, 25948887 - 25948968
Alignment:
Q  242 cgacatcaacacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtctg 323  Q
    ||||| |||||| ||| ||||||||||||||||||||||| ||| ||||||||  || ||||  ||| | ||||||||||||    
T  25948887 cgacaccaacacttataattacactgaattatgtgattttttcaaattattagccgtatcggcatgtcagtgtccgtgtctg 25948968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 488 - 529
Target Start/End: Complemental strand, 45382795 - 45382754
Alignment:
Q  488 gacatatatgattacattgaaatatgttattttcttaaatta 529  Q
    ||||||| |||||||||| |||||||||||||||||||||||    
T  45382795 gacatatgtgattacattcaaatatgttattttcttaaatta 45382754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 49505149 - 49505206
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    ||||||||||   |||||||| |||||||| |||||||||||||||||| ||||||||    
T  49505149 gtgtccgacactgacacatataattacactaaattatgtgattttctcaaattattag 49505206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 3164025 - 3164077
Alignment:
Q  242 cgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||||||| | || |||||||||||||||||||||| ||| ||||||||    
T  3164025 cgacatcaacacttgttcttacactgaattatgtgattttttcaaattattag 3164077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 285
Target Start/End: Original strand, 6780414 - 6780462
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctca 285  Q
    |||||||||| |||||||||| ||||||||||| || ||||||||||||    
T  6780414 gtgtccgacaccaacacatataattacactgaactacgtgattttctca 6780462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 294
Target Start/End: Original strand, 10690274 - 10690314
Alignment:
Q  254 atattattacactgaattatgtgattttctcacattattag 294  Q
    |||| ||||||||||||||||||||||||||| ||||||||    
T  10690274 atataattacactgaattatgtgattttctcagattattag 10690314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 14618831 - 14618787
Alignment:
Q  251 cacatattattacactgaattatgtgattttctcacattattagg 295  Q
    |||||||||||||||||||||||||| |||||| | |||||||||    
T  14618831 cacatattattacactgaattatgtggttttcttaaattattagg 14618787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 482 - 554
Target Start/End: Original strand, 19323449 - 19323521
Alignment:
Q  482 gacactgacatatatgattacattgaaatatgttattttcttaaattagtatccgtgtcgacatgttagtgtc 554  Q
    |||||| ||| || |||||| ||| || ||||| ||||||| |||||| |||| |||||||||||||||||||    
T  19323449 gacacttacacatgtgattaaattcaattatgtcattttctcaaattactatcagtgtcgacatgttagtgtc 19323521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 20691383 - 20691327
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattatta 293  Q
    ||||| |||| | |||||||| ||||||||||||||||| ||||||||| |||||||    
T  20691383 gtgtctgacaccgacacatatgattacactgaattatgtcattttctcaaattatta 20691327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 40993330 - 40993374
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgatttt 281  Q
    |||||||||| | |||||||| |||||||||||||||||||||||    
T  40993330 gtgtccgacaccgacacatataattacactgaattatgtgatttt 40993374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 328
Target Start/End: Complemental strand, 10955016 - 10954925
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtctggtgtc 328  Q
    |||||||||| | |||| | | ||||||||||||||||||||||| ||| ||||||||  || |||| |||| | ||| |||||| ||||||    
T  10955016 gtgtccgacaccgacacttgtgattacactgaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgttcgtgtccggtgtc 10954925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 294
Target Start/End: Complemental strand, 11252020 - 11251985
Alignment:
Q  259 attacactgaattatgtgattttctcacattattag 294  Q
    ||||||||||||||||||||||||||| ||||||||    
T  11252020 attacactgaattatgtgattttctcaaattattag 11251985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 293
Target Start/End: Original strand, 32804548 - 32804591
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattatta 293  Q
    |||||||| |||||||| |||||||||||||||||| |||||||    
T  32804548 acacatataattacactaaattatgtgattttctcaaattatta 32804591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 1438861 - 1438811
Alignment:
Q  244 acatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    ||||||| |||||| |||| |||||||||||||||||||||| ||| ||||    
T  1438861 acatcaatacatataattatactgaattatgtgattttctcaaattgttag 1438811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 289
Target Start/End: Original strand, 4704301 - 4704339
Alignment:
Q  251 cacatattattacactgaattatgtgattttctcacatt 289  Q
    ||||||| ||||||||||||||||| |||||||||||||    
T  4704301 cacatatgattacactgaattatgtcattttctcacatt 4704339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 294
Target Start/End: Complemental strand, 12704056 - 12704014
Alignment:
Q  252 acatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||| |||||||||||||||||| |||||||| ||||||||    
T  12704056 acatataattacactgaattatgtgcttttctcaaattattag 12704014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 554
Target Start/End: Complemental strand, 28590917 - 28590859
Alignment:
Q  496 tgattacattgaaatatgttattttcttaaattagtatccgtgtcgacatgttagtgtc 554  Q
    |||||||||| || | ||||||||||| |||||| |||| ||||| |||||||||||||    
T  28590917 tgattacattcaactttgttattttctcaaattattatcggtgtcaacatgttagtgtc 28590859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 8789492 - 8789537
Alignment:
Q  202 gaagcactgatacttctcggattaggagtgtctcggtgtccgacat 247  Q
    ||||||| || ||| ||||||||||| |||||||||||||||||||    
T  8789492 gaagcacggacactcctcggattaggcgtgtctcggtgtccgacat 8789537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 294
Target Start/End: Complemental strand, 9624689 - 9624648
Alignment:
Q  253 catattattacactgaattatgtgattttctcacattattag 294  Q
    ||||| |||||| |||||||||||||||||||| ||||||||    
T  9624689 catataattacattgaattatgtgattttctcaaattattag 9624648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 283
Target Start/End: Complemental strand, 35223001 - 35222956
Alignment:
Q  238 tgtccgacatcaacacatattattacactgaattatgtgattttct 283  Q
    ||||||||| | |||||||| |||||| ||||||||||||||||||    
T  35223001 tgtccgacaccgacacatataattacattgaattatgtgattttct 35222956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 534
Target Start/End: Original strand, 40150567 - 40150624
Alignment:
Q  477 tgtcagacactgacatatatgattacattgaaatatgttattttcttaaattagtatc 534  Q
    |||||||||| |||| |||||||||||||||| ||| | ||||||| |||||| ||||    
T  40150567 tgtcagacaccgacacatatgattacattgaattatatcattttctcaaattattatc 40150624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 8039843 - 8039887
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||| ||||||||||||||| | ||||||||| ||||||||    
T  8039843 acacatataattacactgaattatataattttctcaaattattag 8039887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 10455849 - 10455797
Alignment:
Q  242 cgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    ||||| |||||||||| |||||||| | |||| ||||||||||| ||||||||    
T  10455849 cgacaccaacacatataattacacttagttatatgattttctcatattattag 10455797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 321
Target Start/End: Original strand, 12674528 - 12674580
Alignment:
Q  269 attatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtc 321  Q
    ||||| ||||||||||| |||||||| ||| ||||||||| | ||||||||||    
T  12674528 attatttgattttctcaaattattagcagtgtcggtgtgtcaatgtccgtgtc 12674580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 15314876 - 15314924
Alignment:
Q  242 cgacatcaacacatattattacactgaattatgtgattttctcacatta 290  Q
    ||||| |||||||||| |||||||| |||||||||||||| ||| ||||    
T  15314876 cgacaccaacacatataattacactaaattatgtgattttttcaaatta 15314924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 489 - 529
Target Start/End: Original strand, 21419463 - 21419503
Alignment:
Q  489 acatatatgattacattgaaatatgttattttcttaaatta 529  Q
    |||||||| ||||||||||| ||| ||||||||||||||||    
T  21419463 acatatataattacattgaattatattattttcttaaatta 21419503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 34307788 - 34307832
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||| ||| ||||||||||| ||||||||||||||| ||||||||    
T  34307788 acacttataattacactgaaatatgtgattttctcaaattattag 34307832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 294
Target Start/End: Complemental strand, 36635376 - 36635331
Alignment:
Q  249 aacacatattattacactgaattatgtgattttctcacattattag 294  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||    
T  36635376 aacacatataattacactgaattatgtgattttctcaaattattag 36635331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 196 - 298
Target Start/End: Original strand, 17425345 - 17425445
Alignment:
Q  196 taatacgaagcactgatacttctcggattaggagtgtctcggtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattagg 295  Q
    ||||| ||||||| || ||| ||||||||||| |||||   ||||| ||||   |||||||  |||||||||||||||| |||||||||| |||||||||    
T  17425345 taatatgaagcacagacactcctcggattaggcgtgtccttgtgtctgacacagacacata--attacactgaattatgcgattttctcaaattattagg 17425442  T
Q  296 agt 298  Q
    |||    
T  17425443 agt 17425445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 202 - 293
Target Start/End: Original strand, 22440561 - 22440651
Alignment:
Q  202 gaagcactgatacttctcggattaggagtgtctcggtgtccgacatcaacacatattattacactgaattatgtgattttctcacattatta 293  Q
    ||||||| || ||| ||||||||||| |||||   ||||| |||| |  ||||||| ||||||||||||||||||||||||||| |||||||    
T  22440561 gaagcacggacactcctcggattaggcgtgtcctagtgtcggaca-cgtcacatataattacactgaattatgtgattttctcaaattatta 22440651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 252 - 293
Target Start/End: Complemental strand, 903971 - 903930
Alignment:
Q  252 acatattattacactgaattatgtgattttctcacattatta 293  Q
    |||||| ||||||||||||||||||||||||||| |||||||    
T  903971 acatataattacactgaattatgtgattttctcaaattatta 903930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 494 - 547
Target Start/End: Original strand, 5654604 - 5654657
Alignment:
Q  494 tatgattacattgaaatatgttattttcttaaattagtatccgtgtcgacatgt 547  Q
    ||||||||||||||| ||||| ||||||| |||||| |||| ||||||||||||    
T  5654604 tatgattacattgaattatgtcattttctcaaattattatcagtgtcgacatgt 5654657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 8423713 - 8423770
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||||| | |||  ||| ||||||||||||||||||||||||||| ||||||||    
T  8423713 gtgtccgacaccgacatttataattacactgaattatgtgattttctcaaattattag 8423770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 241 - 294
Target Start/End: Complemental strand, 15029825 - 15029772
Alignment:
Q  241 ccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||| |||||||||| |||||||||||||||||||| || ||| ||||||||    
T  15029825 ccgacaccaacacatataattacactgaattatgtgatattttcaaattattag 15029772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 483 - 540
Target Start/End: Original strand, 18513243 - 18513300
Alignment:
Q  483 acactgacatatatgattacattgaaatatgttattttcttaaattagtatccgtgtc 540  Q
    ||||||||| |||||||||||||||| ||||| ||||||| |||||| |||| |||||    
T  18513243 acactgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtc 18513300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 54580018 - 54580075
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||||| | |||| ||| ||||||||||||||||||||||| ||| ||||||||    
T  54580018 gtgtccgacaccgacacttataattacactgaattatgtgattttttcaaattattag 54580075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 10499246 - 10499313
Alignment:
Q  217 ctcggattaggagtgtctcggtgtccgacatcaacacatattattacactgaattatgtgattttctca 285  Q
    ||||||||||| |||| |||| ||||||||   |||||||| |||||||| ||||||||||||||||||    
T  10499246 ctcggattaggcgtgtgtcgg-gtccgacactgacacatataattacactaaattatgtgattttctca 10499313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 291
Target Start/End: Original strand, 18576038 - 18576086
Alignment:
Q  243 gacatcaacacatattattacactgaattatgtgattttctcacattat 291  Q
    |||| |||||||||| ||||||| ||||||||||||||||||| |||||    
T  18576038 gacaccaacacatataattacaccgaattatgtgattttctcaaattat 18576086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 40613501 - 40613457
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||| ||||||||||||||||||||||||||| | ||||||    
T  40613501 acacatataattacactgaattatgtgattttctcaaaatattag 40613457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 488 - 540
Target Start/End: Complemental strand, 43300668 - 43300616
Alignment:
Q  488 gacatatatgattacattgaaatatgttattttcttaaattagtatccgtgtc 540  Q
    |||| |||||||||||||||| ||||| ||||||| |||||| ||||||||||    
T  43300668 gacaaatatgattacattgaattatgtaattttctcaaattattatccgtgtc 43300616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 46180942 - 46180986
Alignment:
Q  248 caacacatattattacactgaattatgtgattttctcacattatt 292  Q
    |||||||||| ||||||||||||||||| ||||||||| ||||||    
T  46180942 caacacatatgattacactgaattatgttattttctcaaattatt 46180986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 293
Target Start/End: Original strand, 5775366 - 5775409
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattatta 293  Q
    |||||||| |||||||| |||||||||||||||||| |||||||    
T  5775366 acacatataattacacttaattatgtgattttctcaaattatta 5775409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 493 - 540
Target Start/End: Original strand, 43299983 - 43300030
Alignment:
Q  493 atatgattacattgaaatatgttattttcttaaattagtatccgtgtc 540  Q
    |||||||||||||||| ||||| ||||||| |||||| ||||||||||    
T  43299983 atatgattacattgaattatgtaattttctcaaattattatccgtgtc 43300030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 321
Target Start/End: Complemental strand, 13783331 - 13783261
Alignment:
Q  251 cacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtc 321  Q
    ||||||| ||||||||||||| |||||| |||||| || |||||  || ||||||||| | ||||||||||    
T  13783331 cacatataattacactgaattttgtgatcttctcaaataattagcggtgtcggtgtgtcagtgtccgtgtc 13783261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 294
Target Start/End: Complemental strand, 33950201 - 33950143
Alignment:
Q  236 ggtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||| |||| | |||||||| |||||| | |||||||||||||||||| ||||||||    
T  33950201 ggtgtctgacaccgacacatatgattacattaaattatgtgattttctcaaattattag 33950143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 547
Target Start/End: Complemental strand, 10546194 - 10546141
Alignment:
Q  494 tatgattacattgaaatatgttattttcttaaattagtatccgtgtcgacatgt 547  Q
    ||||||||||||||| ||||| ||||||| |||||| ||||  |||||||||||    
T  10546194 tatgattacattgaattatgtcattttctcaaattattatcattgtcgacatgt 10546141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 283
Target Start/End: Complemental strand, 13134509 - 13134468
Alignment:
Q  242 cgacatcaacacatattattacactgaattatgtgattttct 283  Q
    ||||||| |||||||| |||||||| ||||||||||||||||    
T  13134509 cgacatcgacacatataattacactaaattatgtgattttct 13134468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 16189773 - 16189716
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattag 294  Q
    ||||||| || | ||||| || ||||||||||||||||||||||||||| ||| ||||    
T  16189773 gtgtccgtcaccgacacacataattacactgaattatgtgattttctcaaatttttag 16189716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 293
Target Start/End: Original strand, 20743284 - 20743329
Alignment:
Q  248 caacacatattattacactgaattatgtgattttctcacattatta 293  Q
    |||||| ||| ||||||||||||||||| ||||||||| |||||||    
T  20743284 caacacctatgattacactgaattatgtcattttctcaaattatta 20743329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 529
Target Start/End: Complemental strand, 33950204 - 33950147
Alignment:
Q  472 gttggtgtcagacactgacatatatgattacattgaaatatgttattttcttaaatta 529  Q
    ||||||||| ||||| |||| ||||||||||||| || ||||| ||||||| ||||||    
T  33950204 gttggtgtctgacaccgacacatatgattacattaaattatgtgattttctcaaatta 33950147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 6933326 - 6933282
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||| |||| ||||||||||| |||||||| ||||||||||    
T  6933326 acacatatgattaaactgaattatgagattttcttacattattag 6933282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 9996889 - 9996849
Alignment:
Q  252 acatattattacactgaattatgtgattttctcacattatt 292  Q
    |||||| |||| |||||||||||||||||||||| ||||||    
T  9996889 acatataattatactgaattatgtgattttctcaaattatt 9996849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 321
Target Start/End: Original strand, 23292981 - 23293065
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtc 321  Q
    |||||||||| | |||| | | |||| |||||||||||||||||| ||| ||||||||  || |||| |||| | ||||||||||    
T  23292981 gtgtccgacaccgacacttgtaattatactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcattgtccgtgtc 23293065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 30103365 - 30103412
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattaggagt 298  Q
    |||||||| |||||||| |||||||||||||||||| |||||| |||||    
T  30103365 acacatatgattacact-aattatgtgattttctcaaattatttggagt 30103412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 40179631 - 40179675
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgatttt 281  Q
    |||||||||| | || ||||| |||||||||||||||||||||||    
T  40179631 gtgtccgacaccgacgcatataattacactgaattatgtgatttt 40179675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 238 - 285
Target Start/End: Complemental strand, 42015022 - 42014974
Alignment:
Q  238 tgtccgacatcaacacatattattacactgaa-ttatgtgattttctca 285  Q
    ||||||||| |||||||||| ||||||||||| |||||||||| |||||    
T  42015022 tgtccgacaccaacacatataattacactgaatttatgtgattatctca 42014974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 48139328 - 48139272
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattatta 293  Q
    ||||| ||||||||||||||| |||||| | ||||||| |||| ||||| |||||||    
T  48139328 gtgtctgacatcaacacatataattacattaaattatgagattatctcaaattatta 48139272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 493 - 547
Target Start/End: Complemental strand, 99940 - 99886
Alignment:
Q  493 atatgattacattgaaatatgttattttcttaaattagtatccgtgtcgacatgt 547  Q
    |||| ||||||||||| ||||||||||||| |||||| |||| ||||||||||||    
T  99940 atataattacattgaattatgttattttctaaaattattatcggtgtcgacatgt 99886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 90907 - 90851
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattatta 293  Q
    ||||| |||||| ||| |||| ||||||||||||||| ||||||||||| |||||||    
T  90907 gtgtctgacatcgacatatataattacactgaattatatgattttctcaaattatta 90851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 462 - 543
Target Start/End: Complemental strand, 2026 - 1946
Alignment:
Q  462 tcagacatgtgttggtgtcagacactgacatatatgattacattgaaatatgttattttcttaaattagtatccgtgtcgac 543  Q
    |||||||||||| |||||| ||||| ||||  |||||||||| | |||||||| ||||||  |||||| |||||||||||||    
T  2026 tcagacatgtgtcggtgtccgacac-gacacctatgattacactaaaatatgtcattttcacaaattattatccgtgtcgac 1946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 44533 - 44577
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||| ||||||||||||||||||||||||||| ||| ||||    
T  44533 acacatataattacactgaattatgtgattttctcaaatttttag 44577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 9755 - 9799
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||||||| |||||||||||||| |||||||||||| ||||||||    
T  9755 acacatataattacactgaattaagtgattttctcaaattattag 9799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 263 - 321
Target Start/End: Complemental strand, 13438 - 13380
Alignment:
Q  263 cactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtc 321  Q
    ||||||||||||||||||||||| ||||||||  || |||| |||| | ||||||||||    
T  13438 cactgaattatgtgattttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtc 13380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 20214 - 20152
Alignment:
Q  259 attacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtc 321  Q
    ||||||||||||||||||||||| ||| ||||||||  || |||| |||| | ||||||||||    
T  20214 attacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcattgtccgtgtc 20152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 263 - 321
Target Start/End: Original strand, 21889 - 21947
Alignment:
Q  263 cactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtc 321  Q
    ||||||||||||||||||||||| ||||||||  || |||| |||| | ||||||||||    
T  21889 cactgaattatgtgattttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtc 21947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 51853 - 51791
Alignment:
Q  259 attacactgaattatgtgattttctcacattattaggagtttcggtgtgttactgtccgtgtc 321  Q
    ||||||||||||||||||||||| ||| ||||||||  || |||| |||| | ||||||||||    
T  51853 attacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 51791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 292
Target Start/End: Complemental strand, 53231 - 53189
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattatt 292  Q
    |||| ||| ||||||||||||||||||||||||||| ||||||    
T  53231 acacttataattacactgaattatgtgattttctcaaattatt 53189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 70342 - 70286
Alignment:
Q  237 gtgtccgacatcaacacatattattacactgaattatgtgattttctcacattatta 293  Q
    |||||||||| | |||| ||| ||||||||||||||||| ||||| ||| |||||||    
T  70342 gtgtccgacaccgacacttataattacactgaattatgttattttttcaaattatta 70286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 554
Target Start/End: Complemental strand, 192119 - 192075
Alignment:
Q  510 tatgttattttcttaaattagtatccgtgtcgacatgttagtgtc 554  Q
    |||||||||||| ||||||| |||| |||| ||||||||||||||    
T  192119 tatgttattttcataaattattatcagtgttgacatgttagtgtc 192075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 263380 - 263424
Alignment:
Q  250 acacatattattacactgaattatgtgattttctcacattattag 294  Q
    |||| ||| |||||||||||||||||| |||||||| ||||||||    
T  263380 acacttataattacactgaattatgtggttttctcaaattattag 263424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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