View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18315_high_15 (Length: 559)
Name: NF18315_high_15
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 13 - 547
Target Start/End: Original strand, 13914933 - 13915467
Alignment:
| Q |
13 |
aattttctctcattttcaagctctcaagcctccaaatattcaattttctttattgtgattctaaaattacaaatagaatggactgcaattttcctatctc |
112 |
Q |
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| T |
13914933 |
aattttctctcattttcaagctctcaagcctccaaatattcaattttctttattgtgattctaaaattacaaatagaatggactgcaattttcctatctc |
13915032 |
T |
|
| Q |
113 |
catatgtatatgtaacaattgagacagccttatcaaattaatgaaaggaatgcttgtggaaccaaagcaaactgcatgatgctagtgagtgtatagtcaa |
212 |
Q |
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| T |
13915033 |
catatgtatatgtaacaattgagacagccttatcaaattaatgaaaggaatgcttgtggaaccaaagcaaactgcatgatgctagtgagtgtatagtcaa |
13915132 |
T |
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| Q |
213 |
attttaaatcaacaagtttaactcgacaccacgcgtagctctgcacaatcacacatcacaatacatttcaccatgttcttaccacacatctttgtaacac |
312 |
Q |
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| T |
13915133 |
attttaaatcaacaagtttaactcgacaccacacgtagctctgcacaatcacacatcacaatacatttcaccatgttcttaccacacatctttgtaacac |
13915232 |
T |
|
| Q |
313 |
aacaagtttagcaaaaacattatctgattttatgtttcaatattttacaatatcaacggaaacttaactattttttctattatacccttaatcatccttt |
412 |
Q |
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| T |
13915233 |
aacaagtttagcaaaaacattatctgattttatgtttcaatattttacaatatcaacggaaacttaactattttttctattatacccttaatcatccttt |
13915332 |
T |
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| Q |
413 |
tcaatttttatgaataagaatggagtaattagtaaaatgtagtccaaaagagtgtataatatttttcacaaacctatggtattaattgtattattatttt |
512 |
Q |
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| T |
13915333 |
tcaatttttatgaataagaatggagtaattagtaaaatgtagtccaaaagagtgtataatatttttcacaaacctatggtattaattgtattattatttt |
13915432 |
T |
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| Q |
513 |
ttaatttatgcttcaaaatcttaaaagattagtat |
547 |
Q |
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| T |
13915433 |
ttaatttatgcttcaaaatcttaaaagattagtat |
13915467 |
T |
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