View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18315_high_2 (Length: 993)
Name: NF18315_high_2
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 808; Significance: 0; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 808; E-Value: 0
Query Start/End: Original strand, 17 - 975
Target Start/End: Complemental strand, 45233280 - 45232324
Alignment:
| Q |
17 |
agaaatagacacatttgtatatgctatatataatatcatat----gttgtgcattggaatgagctacacacatcttcaacatagttacataataacatgg |
112 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
45233280 |
agaaatagacacatttatatatgctatatataatatcatatatatgttgtgcattggaatgaactccacacatcttcaacatagttacataataacatgg |
45233181 |
T |
|
| Q |
113 |
actgcgtttttatttgaatgatgacgtcggtgggattggcactgaatagtattaaaaagaacgcttaaaaatcaaatcaacctaaataccaaataaagtt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
45233180 |
actgcgtttttatttgaatgatgacgtcggtgggattggcactgaatagtattaaaaagaacgcttaaaaatcaaatcaacctgaataccaaataaaatt |
45233081 |
T |
|
| Q |
213 |
aatattataaataacattcaagtctatgactacactataaaatatttagttgaatccaaagcatgatctgcactattgacattgtgaattgtgacggaga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45233080 |
aatattataaataacattcaagtctatgactacactataaaatatttagttgaatccaaagcatgatctgcactattgacattgtgaattgtgacggaga |
45232981 |
T |
|
| Q |
313 |
agagagtttccattatcatcatgtggccattcagcaagaaaggaatttctggattctcagggagttcaactgctgaacaagtcactcatggaattgatgc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45232980 |
agagagtttccattatcatcatgtggccattcagcaagaaaggaatttctggtttctcagggagttcaactgctgaacaagtcactcatggaattgatgc |
45232881 |
T |
|
| Q |
413 |
aattggcctcactgctattgttactggtctatcttctattactctttcttaccannnnnnnnnnnnnnnnnnnnncaagcatgccctttgttgaatagta |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
45232880 |
aattggcctcactgctattgttactggtctatcttctattactctttcttaccatttttttaacttttcatttttcaagcatgccctttgttgaatagta |
45232781 |
T |
|
| Q |
513 |
gttttatgttgccgagttattgggaattattagcctgtatgtatgtatatatgtagcttttcattacttagacttgaggagtgattaacaagctctttta |
612 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
45232780 |
gttttatgttgcagagttattgggaattattagcctgtatgtatgtatatatgtagcttttcattacttagacttgaggagtgattaaca---------a |
45232690 |
T |
|
| Q |
613 |
atgatctttatagttgactctataatttaacttcaagattattgctgctgaatttgcatagtcaggatttatttgtttgta---ttctgtgtgactttac |
709 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45232689 |
atgatctttatagttgactctataatttaacttcaagattattgctgctgaatttgcatagtcaggatttatttgtttgtattcttctgtgtgactttac |
45232590 |
T |
|
| Q |
710 |
atggatatgatggtatggtaacaggagcatccagtggtattggagttgagactatgcgtgttcttgctttgcgtggtgtccatgtgattgtggctgttag |
809 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45232589 |
atggatatgattgtatggtaacaggagcatccagtggtattggagttgagactatgcgtgttcttgctttgcgtggtgtccatgtgattgtggctgttag |
45232490 |
T |
|
| Q |
810 |
aaataaggttgctgctaatgatatcaaagaagcaatacttaaggagattccctcagctaaaattgatgtcatggagttagatctcagttcattggaatct |
909 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45232489 |
aaataaggttgctgctaatgatatcaaagaagcaatacttaaggagattccctcagctaaaattgatgtcatggagttagatctcagttcattggaatct |
45232390 |
T |
|
| Q |
910 |
gtcaagaaatttgcatccgaatttaattcctctggtcttccattgaacatcttgatgtaagaaaag |
975 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45232389 |
gtcaagaaatttgcatccgaatttaattcctctggtcttccattgaacatcttgatgtaagaaaag |
45232324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 227; E-Value: 1e-124
Query Start/End: Original strand, 109 - 466
Target Start/End: Complemental strand, 45249376 - 45249016
Alignment:
| Q |
109 |
atggactgcgtttttatttgaatgatgacgtcggtgggattggcactgaatagtattaaaaagaacgcttaaaaatcaaatcaacctaaataccaaataa |
208 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||| | || ||||||||| ||| ||| || ||||| |||||||||||||||||||| |
|
|
| T |
45249376 |
atggactgcgtttttatttgaatgatgacatcagtgggattggcagcaagtaatattaaaaaaaactcttcaagatcaattcaacctaaataccaaataa |
45249277 |
T |
|
| Q |
209 |
agttaatattataaataacattcaagtctatgactacactataaaatatttagttgaatccaaagcatgatctgcactattgacattgtgaattgtgacg |
308 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
45249276 |
aattaatattataaataacattcaagtctatgactacagtataaaatatttagttgaatccaaagcatgatctgcactattgactttgtgaattgtaacg |
45249177 |
T |
|
| Q |
309 |
gagaagagagtttc---cattatcatcatgtggccattcagcaagaaaggaatttctggattctcagggagttcaactgctgaacaagtcactcatggaa |
405 |
Q |
| |
|
|||||||| ||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||| |||||||||| |
|
|
| T |
45249176 |
gagaagagggtttccatcatcatcatcatgtggccattcagcaagaaaggggtttctggattctcagggaattcaactgctgaaaaagttactcatggaa |
45249077 |
T |
|
| Q |
406 |
ttgatgcaattggcctcactgctattgttactggtctatcttctattactctttcttacca |
466 |
Q |
| |
|
|||||||| ||| |||||||||||||| || |||||||||||||| |||||||| ||||| |
|
|
| T |
45249076 |
ttgatgcatctggactcactgctattgtcaccggtctatcttctatcactctttcctacca |
45249016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 710 - 975
Target Start/End: Complemental strand, 45248771 - 45248506
Alignment:
| Q |
710 |
atggatatgatggtatggtaacaggagcatccagtggtattggagttgagactatgcgtgttcttgctttgcgtggtgtccatgtgattgtggctgttag |
809 |
Q |
| |
|
|||||||||||| ||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
45248771 |
atggatatgatgacatgttaacaggagcaaccagtggtattggagttgagactacgcgtgttcttgctttgcgtggtgtccatgtgattatggctgttcg |
45248672 |
T |
|
| Q |
810 |
aaataaggttgctgctaatgatatcaaagaagcaatacttaaggagattccctcagctaaaattgatgtcatggagttagatctcagttcattggaatct |
909 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45248671 |
aaataaggttgctgctaatgatatcaatgaagcaatacttaaggagattccctcggctaaagttgatgtcatggagttagatctcagttcattggaatct |
45248572 |
T |
|
| Q |
910 |
gtcaagaaatttgcatccgaatttaattcctctggtcttccattgaacatcttgatgtaagaaaag |
975 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45248571 |
gtcaaaaaatttgcatcagaatttaattcctctggtcttccattgaacatcttgatgtaagaaaag |
45248506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 710 - 972
Target Start/End: Complemental strand, 45213826 - 45213564
Alignment:
| Q |
710 |
atggatatgatggtatggtaacaggagcatccagtggtattggagttgagactatgcgtgttcttgctttgcgtggtgtccatgtgattgtggctgttag |
809 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||| | |||||||||||||||| |||||||||| |
|
|
| T |
45213826 |
atggatatgatggtatgttaacaggagcatccagtggtattggcactgagactacgcgtgttcttgctttacatggtgtccatgtgattatggctgttag |
45213727 |
T |
|
| Q |
810 |
aaataaggttgctgctaatgatatcaaagaagcaatacttaaggagattccctcagctaaaattgatgtcatggagttagatctcagttcattggaatct |
909 |
Q |
| |
|
|||||||||| ||||||| ||| || ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45213726 |
aaataaggttaatgctaataataccagagaagcaatacttaaagagattccctcagcaaaaattgatgtcatggagttagatctcagttcattggaatct |
45213627 |
T |
|
| Q |
910 |
gtcaagaaatttgcatccgaatttaattcctctggtcttccattgaacatcttgatgtaagaa |
972 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
45213626 |
gtcaagaaatttgcatccgaatttaattcctctggtcttccgttgaacatattgatgtaagaa |
45213564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 725 - 974
Target Start/End: Complemental strand, 45206693 - 45206444
Alignment:
| Q |
725 |
tggtaacaggagcatccagtggtattggagttgagactatgcgtgttcttgctttgcgtggtgtccatgtgattgtggctgttagaaataaggttgctgc |
824 |
Q |
| |
|
||||||||||||||||||| || ||||| | ||||||| ||||| ||||||||||| ||||| ||||||||| ||| ||| ||||| ||||||||| |
|
|
| T |
45206693 |
tggtaacaggagcatccagcggcattggcgctgagactgctcgtgtccttgctttgcgcggtgtgcatgtgattatgggtgtgagaaacttggttgctgc |
45206594 |
T |
|
| Q |
825 |
taatgatatcaaagaagcaatacttaaggagattccctcagctaaaattgatgtcatggagttagatctcagttcattggaatctgtcaagaaatttgca |
924 |
Q |
| |
|
||| ||| ||||||| ||||||| ||||| ||||||||||| ||| |||||| |||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
45206593 |
taaagatgtcaaagatacaatactcaaggacattccctcagccaaacttgatgccatggagttagatctcagctcattggactctgtcaagaaatttgca |
45206494 |
T |
|
| Q |
925 |
tccgaatttaattcctctggtcttccattgaacatcttgatgtaagaaaa |
974 |
Q |
| |
|
|| || | |||||| ||||||| |||| |||||||||||||||||||||| |
|
|
| T |
45206493 |
tctgagtataattcttctggtcgtccactgaacatcttgatgtaagaaaa |
45206444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 578 - 711
Target Start/End: Complemental strand, 45248939 - 45248806
Alignment:
| Q |
578 |
acttagacttgaggagtgattaacaagctcttttaatgatctttatagttgactctataatttaacttcaagattattgctgctg-aatttgcatagtca |
676 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
45248939 |
acttagacttgaggagtgattaacaagct-ttttaacgatttttatagttgactctataatttaacttcaagattattgctgctgaaattttcatagtca |
45248841 |
T |
|
| Q |
677 |
ggatttatttgtttgtattctgtgtgactttacat |
711 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||| |
|
|
| T |
45248840 |
aaatttatttgtttatattctgtgtgattttacat |
45248806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 324 - 464
Target Start/End: Complemental strand, 45214250 - 45214110
Alignment:
| Q |
324 |
attatcatcatgtggccattcagcaagaaaggaatttctggattctcagggagttcaactgctgaacaagtcactcatggaattgatgcaattggcctca |
423 |
Q |
| |
|
||||||||||||||||||||||||| |||||| | ||||| || ||| ||| |||||||||||| |||| ||||||||||||||||||| |||||||| |
|
|
| T |
45214250 |
attatcatcatgtggccattcagcaggaaaggggtatctgggttttcatggaagtcaactgctgaagaagttactcatggaattgatgcaactggcctca |
45214151 |
T |
|
| Q |
424 |
ctgctattgttactggtctatcttctattactctttcttac |
464 |
Q |
| |
|
|||||||||| |||||| ||||||| ||||||||||||| |
|
|
| T |
45214150 |
ctgctattgtcactggtgattcttctactactctttcttac |
45214110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 333 - 440
Target Start/End: Complemental strand, 45207819 - 45207712
Alignment:
| Q |
333 |
atgtggccattcagcaagaaaggaatttctggattctcagggagttcaactgctgaacaagtcactcatggaattgatgcaattggcctcactgctattg |
432 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || ||| ||| |||||||||||||||||||| |||||||| ||||| | ||| |||||||| |||| |
|
|
| T |
45207819 |
atgtggccattcagcaagaaaggtgtttctggtttttcatggaactcaactgctgaacaagtcacacatggaatcgatgctactggtctcactgccattg |
45207720 |
T |
|
| Q |
433 |
ttactggt |
440 |
Q |
| |
|
|||||||| |
|
|
| T |
45207719 |
ttactggt |
45207712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 756 - 927
Target Start/End: Complemental strand, 45233785 - 45233614
Alignment:
| Q |
756 |
tgagactatgcgtgttcttgctttgcgtggtgtccatgtgattgtggctgttagaaataaggttgctgctaatgatatcaaagaagcaatacttaaggag |
855 |
Q |
| |
|
|||||||| ||||| |||| ||||| |||| ||||||||| ||| | | ||||||| ||||| ||||| ||| ||||||| |||| | ||||| |
|
|
| T |
45233785 |
tgagactactcgtgtccttgttttgcacagtgttcatgtgattatgggtatgagaaatatagttgccgctaaagatgtcaaagatataatagtcaaggac |
45233686 |
T |
|
| Q |
856 |
attccctcagctaaaattgatgtcatggagttagatctcagttcattggaatctgtcaagaaatttgcatcc |
927 |
Q |
| |
|
|||||||| |||||| ||||| |||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
45233685 |
attccctctgctaaacttgatatcatggagttagatctcaactcattggattctgtcaagaaatttgcatcc |
45233614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 373 - 438
Target Start/End: Complemental strand, 45234515 - 45234450
Alignment:
| Q |
373 |
ggagttcaactgctgaacaagtcactcatggaattgatgcaattggcctcactgctattgttactg |
438 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||| || ||||||||| ||||| |||| |
|
|
| T |
45234515 |
ggagatcaaccgctgaacaagtcactcatggaattgatgcaactgacctcactgccattgtcactg |
45234450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 488 - 530
Target Start/End: Complemental strand, 45248994 - 45248952
Alignment:
| Q |
488 |
caagcatgccctttgttgaatagtagttttatgttgccgagtt |
530 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45248994 |
caagcatgccctttgttgaatagtagttttatgttgcagagtt |
45248952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 7e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 837 - 974
Target Start/End: Complemental strand, 19278477 - 19278340
Alignment:
| Q |
837 |
agaagcaatacttaaggagattccctcagctaaaattgatgtcatggagttagatctcagttcattggaatctgtcaagaaatttgcatccgaatttaat |
936 |
Q |
| |
|
||||| |||||||||||||||||| ||||||| ||||||| |||||||||||| | |||||| ||| |||||| | ||||||||||| ||||| ||| |
|
|
| T |
19278477 |
agaagaaatacttaaggagattcctaaagctaaagttgatgtaatggagttagatttaagttcaatggcatctgttagaaaatttgcatcagaattcaat |
19278378 |
T |
|
| Q |
937 |
tcctctggtcttccattgaacatcttgatgtaagaaaa |
974 |
Q |
| |
|
|||||| ||||||||||||||| | ||||||||||| |
|
|
| T |
19278377 |
tcctcttctcttccattgaacattctcatgtaagaaaa |
19278340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 837 - 974
Target Start/End: Complemental strand, 19295882 - 19295745
Alignment:
| Q |
837 |
agaagcaatacttaaggagattccctcagctaaaattgatgtcatggagttagatctcagttcattggaatctgtcaagaaatttgcatccgaatttaat |
936 |
Q |
| |
|
||||| |||||||||||||||||| ||||||| || ||| |||||||||||| | |||||| ||| |||||| | ||||||||||| ||||| ||| |
|
|
| T |
19295882 |
agaagaaatacttaaggagattcctaaagctaaagttagtgtgatggagttagatttaagttcaatggcatctgttagaaaatttgcatcagaattcaat |
19295783 |
T |
|
| Q |
937 |
tcctctggtcttccattgaacatcttgatgtaagaaaa |
974 |
Q |
| |
|
|||||| ||||||||||||||| | ||||||||||| |
|
|
| T |
19295782 |
tcctcttctcttccattgaacattctcatgtaagaaaa |
19295745 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 829 - 951
Target Start/End: Original strand, 41049653 - 41049775
Alignment:
| Q |
829 |
gatatcaaagaagcaatacttaaggagattccctcagctaaaattgatgtcatggagttagatctcagttcattggaatctgtcaagaaatttgcatccg |
928 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||| | ||||| |||||||| | ||||||||||| || || |||| |||||| | |||||| ||| | | |
|
|
| T |
41049653 |
gatatcaaagaatcaatacttaaggaaattccagctgctaagattgatgtttttgagttagatcttagctctttggcatctgttaggaaattcgcagcag |
41049752 |
T |
|
| Q |
929 |
aatttaattcctctggtcttcca |
951 |
Q |
| |
|
| ||||||||||| ||||||||| |
|
|
| T |
41049753 |
attttaattcctccggtcttcca |
41049775 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 378 - 411
Target Start/End: Original strand, 41049401 - 41049434
Alignment:
| Q |
378 |
tcaactgctgaacaagtcactcatggaattgatg |
411 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
|
|
| T |
41049401 |
tcaactgctcaacaagtcactcatggaattgatg |
41049434 |
T |
|
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