View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18315_high_21 (Length: 491)
Name: NF18315_high_21
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_high_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 20 - 383
Target Start/End: Complemental strand, 44634975 - 44634602
Alignment:
| Q |
20 |
aaatgtttctacatatttatttaaattgaaggtgatagatagtaacagaacagtaaacataggttcccacctcaactactctatccttccatttcacaag |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44634975 |
aaatgtttctacatatttatttaaattgaaggtgatagatagtaacagaacagtaaaca--ggttcccacctcaactactctatccttccatttcacaag |
44634878 |
T |
|
| Q |
120 |
ccattgtttgac-ctttgagaaatgaggtagaacacacgatttccataaggttacgtattaaagatcttgtttatggatcatgccaagaaggggagacgg |
218 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44634877 |
ccattgtttgacactttgagaaatgaggtagaacacacgatttccataaggttacgtattaaagatcttgtttatggatcatgccaagaaggagagacgg |
44634778 |
T |
|
| Q |
219 |
aagctgaatgtggggcgcaacaatcccaccagcaaggg-----------ataacccgaaaaattagtcaatcaaagactcatcactttatatgggaatcc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
44634777 |
aagctgaatgtggggcgcaacaatcccaccagcaagggagttatcatgcataacccgaaaaattagacaatcaaagactcatcactttatatgggaatcc |
44634678 |
T |
|
| Q |
308 |
taacaatccttcttaagttcacttgctaaaaaattgatctcactcctctcaaatctcttttgtatgtatgctttgc |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44634677 |
taacaatccttcttaagttcacttgctaaaaaattgatctcactcctctcaaatctcttttttatgtatgctttgc |
44634602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 380 - 478
Target Start/End: Complemental strand, 44634479 - 44634381
Alignment:
| Q |
380 |
ttgcccttttttattcataatgtatttcatgtatatatattgaattgaactaaattggatcatctttatctcaaaatgtgcttagcctgatcactcttc |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
44634479 |
ttgcccttttttattcataatgtatttcatgtatatatattgaattgatctaaattgaatcatctttatctcaaaatgcgcttagcctgatcactcttc |
44634381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 380
Target Start/End: Complemental strand, 44398109 - 44398043
Alignment:
| Q |
310 |
acaatccttcttaagttcacttgctaaaaaattgatctcactcctctcaaatctcttttgtatgtatgctt |
380 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44398109 |
acaatccttcttaagttcacttgctaaa----tcatctcactccttccaaatctcttttgtatgtatgctt |
44398043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 419
Target Start/End: Complemental strand, 44397923 - 44397891
Alignment:
| Q |
387 |
tttttattcataatgtatttcatgtatatatat |
419 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
44397923 |
ttttttttcataatgtatttcatgtatatatat |
44397891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 412 - 477
Target Start/End: Complemental strand, 49128715 - 49128650
Alignment:
| Q |
412 |
atatatattgaattgaactaaattggatcatctttatctcaaaatgtgcttagcctgatcactctt |
477 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||| || |||||||| ||||| ||||| |
|
|
| T |
49128715 |
atatacattgaattgaactaaattggtgcatctttatctcaacatatgcttagcttgatccctctt |
49128650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 380
Target Start/End: Complemental strand, 49129312 - 49129234
Alignment:
| Q |
302 |
gaatcctaacaatccttcttaagttcacttgctaaaaaattgatctcactcctctcaaatctcttttgtatgtatgctt |
380 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||| || ||||||||| | | || |||||||| |||||||||| |
|
|
| T |
49129312 |
gaatcctagcaatgtttcttaagttcacttgctaaaaagttcatctcactcatttaaactctcttttacatgtatgctt |
49129234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University