View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18315_high_29 (Length: 447)
Name: NF18315_high_29
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_high_29 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 443
Target Start/End: Original strand, 40917088 - 40917513
Alignment:
| Q |
18 |
ccaccacggtatcagaaacctttggtgaagggaacactgagaaagtcaacatcattctgtctggatactcttctctgatcttggaaatgagcaaggtacc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40917088 |
ccaccacggtatcagaaacctttggtgaagggaacactgagaaagtcaacatcattctgtctggatactcttctctgatcttggaaatgagcaaggtacc |
40917187 |
T |
|
| Q |
118 |
cattcctgatccagttccacctccaagcgaatgacaaatttgaaaacctgtcaacatcaaacaatttccattcgcataaagtataaggttgtttccaaat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
40917188 |
cattcctgatccagttccacctccaagcgaatgacaaatttgaaaacctgtcaacatcaaacaatttccattcgcataaagcataaggttgtttacaaat |
40917287 |
T |
|
| Q |
218 |
cttgtccatgtcaccattcttaatattgtagagaattacggtaaaatatgttagtgaccaaaaagcatctccaatgcaagaaggagattaattaaaaaca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40917288 |
cttgtccatgtcaccattcttaatattgtagagaattacggttaaatatgttagtgaccaaaaagcatctccaatgcaagaaggagattaattaaaaaca |
40917387 |
T |
|
| Q |
318 |
atgttttatgttcttaagttatttttagtaggccccaagttaccacctatggctatgatttaagaactactcaaataaagaaatggtgaaagggaggaat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40917388 |
atgttttatgttcttaagttatttttagtaggccccaagttaccacctatggctatgatttaagaactactcaaataaagaaatggtgaaagggaggaat |
40917487 |
T |
|
| Q |
418 |
tgaggaattagggtttcttctcactc |
443 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
40917488 |
tgaggaattagggtttcttgtcactc |
40917513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 5922019 - 5922166
Alignment:
| Q |
20 |
accacggtatcagaaacctttggtgaagggaacactgagaaagtcaacatcattctgtctggatactcttctctgatcttggaaatgagcaaggtaccca |
119 |
Q |
| |
|
||||| || ||||||||||| || |||||||| || |||||||| | |||||| |||||||| || ||||| |||||||| |||||||| | ||| |||| |
|
|
| T |
5922019 |
accacagtgtcagaaaccttaggagaagggaaaacagagaaagtaagcatcatcctgtctgggtattcttccctgatctttgaaatgagaagggttccca |
5922118 |
T |
|
| Q |
120 |
ttcctgatccagttccacctccaagcgaatgacaaatttgaaaacctg |
167 |
Q |
| |
|
|||| ||||||||||| || || || |||||||| | ||| ||||||| |
|
|
| T |
5922119 |
ttccagatccagttcctccacctagtgaatgacatacttggaaacctg |
5922166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 5935484 - 5935631
Alignment:
| Q |
20 |
accacggtatcagaaacctttggtgaagggaacactgagaaagtcaacatcattctgtctggatactcttctctgatcttggaaatgagcaaggtaccca |
119 |
Q |
| |
|
||||| || ||||||||||| || |||||||| || |||||||| | |||||| || ||||| || ||||| |||||||| ||||| | | |||||||| |
|
|
| T |
5935484 |
accacagtgtcagaaaccttaggagaagggaaaacagagaaagtaagcatcatcctatctgggtattcttccctgatctttgaaatcaaaagggtaccca |
5935583 |
T |
|
| Q |
120 |
ttcctgatccagttccacctccaagcgaatgacaaatttgaaaacctg |
167 |
Q |
| |
|
|||| || |||||||| || ||||| ||||| || | ||||||||||| |
|
|
| T |
5935584 |
ttccagacccagttcctccaccaagtgaatggcatacttgaaaacctg |
5935631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 26 - 168
Target Start/End: Original strand, 38178416 - 38178558
Alignment:
| Q |
26 |
gtatcagaaacctttggtgaagggaacactgagaaagtcaacatcattctgtctggatactcttctctgatcttggaaatgagcaaggtacccattcctg |
125 |
Q |
| |
|
||||| |||||||| |||||||| ||||| || || ||||||||||| | || ||||||||||| || ||||| ||||| || | || |||||||| | |
|
|
| T |
38178416 |
gtatctgaaaccttaggtgaaggaaacacagaaaacgtcaacatcatacgatccggatactcttccctaatcttcgaaataagaagtgttcccattccag |
38178515 |
T |
|
| Q |
126 |
atccagttccacctccaagcgaatgacaaatttgaaaacctgt |
168 |
Q |
| |
|
| |||||||||||||| | |||||||| | |||||| ||||| |
|
|
| T |
38178516 |
aaccagttccacctcccaatgaatgacacacttgaaatcctgt |
38178558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 5532009 - 5531885
Alignment:
| Q |
20 |
accacggtatcagaaacctttggtgaagggaacactgagaaagtcaacatcattctgtctggatactcttctctgatcttggaaatgagcaaggtaccca |
119 |
Q |
| |
|
||||| || ||||||||||| || |||||||| || |||||||| | |||||| |||||||| || ||||| |||||||| ||||| || | || |||| |
|
|
| T |
5532009 |
accacagtgtcagaaaccttaggagaagggaaaacagagaaagtaagcatcatcctgtctgggtattcttccctgatctttgaaatcagaagagttccca |
5531910 |
T |
|
| Q |
120 |
ttcctgatccagttccacctccaag |
144 |
Q |
| |
|
|||| || |||||||| || ||||| |
|
|
| T |
5531909 |
ttccagacccagttcctccaccaag |
5531885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 34840198 - 34840071
Alignment:
| Q |
26 |
gtatcagaaacctttggtgaagggaacactgagaaagtcaacatcattctgtctggatactcttctctgatcttggaaatgagcaaggtacccattcctg |
125 |
Q |
| |
|
|||||||||||||| || ||||| ||||| || || ||||||||||| || || ||||| || ||||| ||||| ||||| | ||| || |||||||| | |
|
|
| T |
34840198 |
gtatcagaaaccttcggagaaggaaacaccgaaaacgtcaacatcatcctatcaggatattcctctctaatcttcgaaatcaacaaagttcccattccag |
34840099 |
T |
|
| Q |
126 |
atccagttccacctccaagcgaatgaca |
153 |
Q |
| |
|
|||| ||||| ||||| | ||||||||| |
|
|
| T |
34840098 |
atcccgttcctcctcccaacgaatgaca |
34840071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 358
Target Start/End: Complemental strand, 14344795 - 14344751
Alignment:
| Q |
314 |
aacaatgttttatgttcttaagttatttttagtaggccccaagtt |
358 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||||| ||||||||||| |
|
|
| T |
14344795 |
aacaatgctttatgttcttgagttacttttagtgggccccaagtt |
14344751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 358
Target Start/End: Original strand, 50422216 - 50422264
Alignment:
| Q |
310 |
taaaaacaatgttttatgttcttaagttatttttagtaggccccaagtt |
358 |
Q |
| |
|
|||||| ||||||| |||||||| ||||||||||| | ||||||||||| |
|
|
| T |
50422216 |
taaaaaaaatgtttgatgttcttcagttatttttaattggccccaagtt |
50422264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University