View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18315_high_30 (Length: 441)
Name: NF18315_high_30
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_high_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Original strand, 50649170 - 50649582
Alignment:
| Q |
18 |
agttggcataactgattgtaagagttgacatctacaaagaaatacaaatacaaatcaaaatcaacataagtaggtaaacatcagaacaatggaaatttaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50649170 |
agttggcataactgattgtaagagttgacatctacaaagaaatacaaatacaaatcaaaatcaacataagtaggtaaacatcagaacaatggaaatttaa |
50649269 |
T |
|
| Q |
118 |
aagaccaaaaagtagtgtctgattctaatttgggtgtttatgttgtgaacaagatgattgacaaacaacatttactatgtgacaattttcttctttttca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50649270 |
aagaccaaaaagtagtgtctgattctaatttggctgtttatgttgtaaacaaaatgattgacaaacaacatttactatgtgacaattttcttctttttca |
50649369 |
T |
|
| Q |
218 |
aaatttaaaagtaatatactttatcgagaacaaaaacacaaatcaacaaaactaccataacgaaaacaggtaagaaaattatatagataaacacaataat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50649370 |
aaatttaaaagtaatatactttatcgagaacaaaaacacaaatcaacaaaactaccataacgaaaacaggtaagaaaattatatagataaacacaataat |
50649469 |
T |
|
| Q |
318 |
gcttcataccaaatgtggcaccaaagtcagtcaatatttcagcacgaatagagttgttactttcagcaatgccaataacctcaacataattcatgacagg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50649470 |
gcttcataccaaatgtggcaccaaagtcagtcaatatttcagcacgaatagagttgttactttcagcaatgccaataacctcaacataattcatgacagg |
50649569 |
T |
|
| Q |
418 |
gacttgtgatgat |
430 |
Q |
| |
|
||||||||||||| |
|
|
| T |
50649570 |
gacttgtgatgat |
50649582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 154 - 430
Target Start/End: Original strand, 50659718 - 50659994
Alignment:
| Q |
154 |
tttatgttgtgaacaagatgattgacaaacaacatttactatgtgacaattttcttctttttcaaaatttaaaagtaatatactttatcgagaacaaaaa |
253 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| |||||| |||| |||| |||||||||||||||||||||| |||| || || || || |||||||| |
|
|
| T |
50659718 |
tttaagttgtgaacaaaatgattgacaaacgccatttaatatgcgacagttttcttctttttcaaaatttagaagttccctaattaattgataacaaaaa |
50659817 |
T |
|
| Q |
254 |
cacaaatcaacaaaactaccataacgaaaacaggtaagaaaattatatagataaacacaataatgcttcataccaaatgtggcaccaaagtcagtcaata |
353 |
Q |
| |
|
|| || ||||||| ||||||||||| |||||| ||||||||| |||||||||||| |||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
50659818 |
cagaattcaacaagactaccataacaaaaacaagtaagaaaactatatagataaaaacaatagtgcttcttaccaaatgtggcaccaaagtcagtcaata |
50659917 |
T |
|
| Q |
354 |
tttcagcacgaatagagttgttactttcagcaatgccaataacctcaacataattcatgacagggacttgtgatgat |
430 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50659918 |
tttcagcatggatagagttgttactttcagcaatgccaataacctcaacataattcatgacagggacttgtgatgat |
50659994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 50659652 - 50659693
Alignment:
| Q |
18 |
agttggcataactgattgtaagagttgacatctacaaagaaa |
59 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50659652 |
agttggcataactgattgtaagagttgacatctacaaagaaa |
50659693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University