View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18315_high_32 (Length: 418)
Name: NF18315_high_32
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_high_32 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 53 - 380
Target Start/End: Complemental strand, 11729618 - 11729291
Alignment:
| Q |
53 |
tggctgacactaaattcacattggcagcgaaagtaacaatatataggcaactgcttgcctctctctcgatgtaaatcaaaccaaacttgaattaagaaag |
152 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| |
|
|
| T |
11729618 |
tggctgacactaaattcacattggcagtgaaagtaacaatatataggcaactgcttgcctctctctcgatgtaaatcaagccaaactttaaataagaaag |
11729519 |
T |
|
| Q |
153 |
taaatatgaggcaacaaaattttaaaaattactttctaccttcaaacagtctatgtcatgagataacaaaatcatatcaaagagttagttgaatcagatg |
252 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||| |
|
|
| T |
11729518 |
taaatatgaggcaacaaaattattaaaattactttctaccttcaaacagtctatgtcatgagataacaaaatcatattaaagagtaaattgaatcagatg |
11729419 |
T |
|
| Q |
253 |
ctactgaaaatttatttgcaaaagaatgaacacatgtcactggatatcacacaaccatgattgagaaatagattagagagaacatacataccttctatta |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11729418 |
ctactgaaaatttatttgcaaaagaatgaacacatgtcactggatatcacacaaccatgattgagaaatagaatagagagaacatacataccttctatta |
11729319 |
T |
|
| Q |
353 |
gtttctttcctctggaccacataatttg |
380 |
Q |
| |
|
||||||||||| |||||||||||||||| |
|
|
| T |
11729318 |
gtttctttcctttggaccacataatttg |
11729291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 53 - 380
Target Start/End: Complemental strand, 23739930 - 23739603
Alignment:
| Q |
53 |
tggctgacactaaattcacattggcagcgaaagtaacaatatataggcaactgcttgcctctctctcgatgtaaatcaaaccaaacttgaattaagaaag |
152 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| |
|
|
| T |
23739930 |
tggctgacactaaattcacattggcagtgaaagtaacaatatataggcaactgcttgcctctctctcgatgtaaatcaagccaaactttaaataagaaag |
23739831 |
T |
|
| Q |
153 |
taaatatgaggcaacaaaattttaaaaattactttctaccttcaaacagtctatgtcatgagataacaaaatcatatcaaagagttagttgaatcagatg |
252 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||| |
|
|
| T |
23739830 |
taaatatgaggcaacaaaattattaaaattactttctaccttcaaacagtctatgtcatgagataacaaaatcatattaaagagtaaattgaatcagatg |
23739731 |
T |
|
| Q |
253 |
ctactgaaaatttatttgcaaaagaatgaacacatgtcactggatatcacacaaccatgattgagaaatagattagagagaacatacataccttctatta |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23739730 |
ctactgaaaatttatttgcaaaagaatgaacacatgtcactggatatcacacaaccatgattgagaaatagaatagagagaacatacataccttctatta |
23739631 |
T |
|
| Q |
353 |
gtttctttcctctggaccacataatttg |
380 |
Q |
| |
|
||||||||||| |||||||||||||||| |
|
|
| T |
23739630 |
gtttctttcctttggaccacataatttg |
23739603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 50834502 - 50834464
Alignment:
| Q |
16 |
gttcttacaaaccgagaaagcaaattcattccccaagtg |
54 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50834502 |
gttcttacaaaccgagaaagcaaattcattccccaagtg |
50834464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 50841351 - 50841389
Alignment:
| Q |
16 |
gttcttacaaaccgagaaagcaaattcattccccaagtg |
54 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50841351 |
gttcttacaaaccgagaaagcaaattcattccccaagtg |
50841389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 378
Target Start/End: Original strand, 43043102 - 43043142
Alignment:
| Q |
338 |
acataccttctattagtttctttcctctggaccacataatt |
378 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
43043102 |
acatatcttctattagtttctttcctatggactacataatt |
43043142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University