View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18315_high_42 (Length: 356)

Name: NF18315_high_42
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18315_high_42
NF18315_high_42
[»] chr7 (27 HSPs)
chr7 (24-79)||(38837217-38837272)
chr7 (24-79)||(4999559-4999614)
chr7 (1-79)||(11044188-11044266)
chr7 (24-80)||(35137532-35137588)
chr7 (24-79)||(3434562-3434617)
chr7 (24-79)||(7389389-7389444)
chr7 (24-79)||(36361958-36362013)
chr7 (24-82)||(38267037-38267095)
chr7 (38-79)||(8080442-8080483)
chr7 (24-80)||(19329841-19329897)
chr7 (24-79)||(36362026-36362081)
chr7 (24-76)||(3783998-3784050)
chr7 (24-80)||(31735883-31735939)
chr7 (43-79)||(35468919-35468955)
chr7 (24-79)||(19436232-19436287)
chr7 (24-79)||(22343361-22343416)
chr7 (24-79)||(40957707-40957762)
chr7 (24-79)||(46374847-46374902)
chr7 (24-78)||(32951538-32951592)
chr7 (24-80)||(8238211-8238268)
chr7 (42-79)||(10343626-10343663)
chr7 (82-110)||(16686191-16686219)
chr7 (82-110)||(17660427-17660455)
chr7 (24-80)||(21234400-21234456)
chr7 (80-108)||(32310915-32310943)
chr7 (80-108)||(36924442-36924470)
chr7 (41-81)||(39255985-39256025)
[»] chr4 (18 HSPs)
chr4 (24-79)||(42044412-42044467)
chr4 (24-81)||(6034042-6034099)
chr4 (27-92)||(11511510-11511575)
chr4 (38-79)||(29234304-29234345)
chr4 (24-79)||(480492-480547)
chr4 (24-79)||(48183094-48183149)
chr4 (24-79)||(50052473-50052528)
chr4 (24-82)||(54473578-54473636)
chr4 (24-81)||(50526216-50526273)
chr4 (24-80)||(3481653-3481709)
chr4 (27-79)||(24995155-24995207)
chr4 (24-84)||(41236342-41236402)
chr4 (24-79)||(23608235-23608290)
chr4 (24-79)||(29239886-29239941)
chr4 (24-80)||(40574778-40574834)
chr4 (24-79)||(55475191-55475246)
chr4 (24-81)||(31910190-31910247)
chr4 (80-108)||(43028089-43028117)
[»] chr2 (29 HSPs)
chr2 (24-79)||(7465780-7465835)
chr2 (24-79)||(17473020-17473075)
chr2 (24-79)||(9058480-9058535)
chr2 (24-79)||(33436145-33436200)
chr2 (24-82)||(40701475-40701533)
chr2 (24-80)||(28381700-28381756)
chr2 (24-76)||(28863458-28863510)
chr2 (38-79)||(30915463-30915504)
chr2 (27-79)||(5574536-5574588)
chr2 (24-80)||(13438342-13438398)
chr2 (24-76)||(19930865-19930917)
chr2 (24-80)||(27864703-27864759)
chr2 (27-79)||(33436211-33436263)
chr2 (24-80)||(40613947-40614003)
chr2 (24-79)||(10249427-10249482)
chr2 (24-79)||(32505693-32505748)
chr2 (24-79)||(38273187-38273242)
chr2 (24-81)||(4060683-4060740)
chr2 (38-78)||(41575138-41575178)
chr2 (24-79)||(26891549-26891604)
chr2 (24-79)||(38882859-38882913)
chr2 (80-110)||(7418976-7419006)
chr2 (79-109)||(23914903-23914933)
chr2 (24-73)||(3439985-3440034)
chr2 (38-79)||(20700815-20700856)
chr2 (86-115)||(22881460-22881489)
chr2 (80-108)||(8785366-8785394)
chr2 (80-108)||(31126562-31126590)
chr2 (24-80)||(43490120-43490176)
[»] chr5 (19 HSPs)
chr5 (1-78)||(36875624-36875702)
chr5 (24-81)||(35785197-35785254)
chr5 (24-76)||(18520929-18520981)
chr5 (24-80)||(33149683-33149739)
chr5 (24-80)||(40145406-40145462)
chr5 (24-79)||(2740274-2740329)
chr5 (24-79)||(36732987-36733042)
chr5 (27-80)||(14831813-14831866)
chr5 (24-80)||(28177774-28177830)
chr5 (24-80)||(42414347-42414403)
chr5 (24-79)||(3921310-3921365)
chr5 (24-79)||(13811652-13811707)
chr5 (24-79)||(35943937-35943992)
chr5 (38-80)||(26720515-26720557)
chr5 (38-80)||(26990264-26990306)
chr5 (86-115)||(32234457-32234486)
chr5 (80-109)||(40693163-40693192)
chr5 (80-109)||(43397628-43397657)
chr5 (80-108)||(3945023-3945051)
[»] chr1 (20 HSPs)
chr1 (24-81)||(9474921-9474978)
chr1 (24-79)||(2581915-2581970)
chr1 (24-80)||(47452365-47452421)
chr1 (24-79)||(3000319-3000374)
chr1 (24-82)||(48716327-48716385)
chr1 (24-80)||(27564780-27564836)
chr1 (24-79)||(32813247-32813302)
chr1 (276-335)||(34712091-34712150)
chr1 (24-79)||(38595154-38595209)
chr1 (24-79)||(38632366-38632421)
chr1 (24-79)||(41758805-41758860)
chr1 (24-83)||(50591045-50591104)
chr1 (24-79)||(51898728-51898783)
chr1 (24-80)||(37649197-37649253)
chr1 (24-79)||(8346433-8346488)
chr1 (38-79)||(50630458-50630499)
chr1 (81-109)||(8723138-8723166)
chr1 (80-108)||(9848517-9848545)
chr1 (24-72)||(26440741-26440789)
chr1 (80-108)||(49840215-49840243)
[»] chr3 (24 HSPs)
chr3 (24-80)||(53982010-53982066)
chr3 (24-79)||(11095398-11095453)
chr3 (24-79)||(49607414-49607469)
chr3 (24-81)||(33644198-33644255)
chr3 (24-79)||(54868940-54868995)
chr3 (24-74)||(52629305-52629355)
chr3 (24-80)||(26141577-26141633)
chr3 (24-79)||(8076393-8076448)
chr3 (24-79)||(17470405-17470460)
chr3 (24-79)||(27714936-27714991)
chr3 (24-79)||(33118896-33118951)
chr3 (24-74)||(26754700-26754750)
chr3 (24-78)||(31456690-31456744)
chr3 (27-81)||(45058601-45058654)
chr3 (27-79)||(14623887-14623939)
chr3 (27-79)||(24700002-24700054)
chr3 (24-79)||(36707469-36707524)
chr3 (24-79)||(47531865-47531920)
chr3 (24-79)||(51419405-51419460)
chr3 (24-82)||(30801778-30801836)
chr3 (38-75)||(48587150-48587187)
chr3 (27-79)||(8956762-8956814)
chr3 (27-79)||(35536626-35536678)
chr3 (80-108)||(53995128-53995156)
[»] chr8 (22 HSPs)
chr8 (24-80)||(504166-504222)
chr8 (24-80)||(15197332-15197388)
chr8 (24-80)||(34012341-34012397)
chr8 (24-79)||(1179985-1180040)
chr8 (24-79)||(12831047-12831102)
chr8 (24-82)||(40423988-40424046)
chr8 (24-80)||(23122642-23122698)
chr8 (24-80)||(43414626-43414682)
chr8 (24-79)||(14547922-14547977)
chr8 (24-79)||(37038479-37038534)
chr8 (24-79)||(44507132-44507187)
chr8 (24-78)||(5957831-5957885)
chr8 (40-78)||(9122196-9122234)
chr8 (38-79)||(4854922-4854963)
chr8 (38-87)||(15048240-15048289)
chr8 (27-80)||(20074982-20075035)
chr8 (24-79)||(16383377-16383432)
chr8 (24-79)||(34307216-34307271)
chr8 (24-74)||(10621132-10621182)
chr8 (38-79)||(30479533-30479574)
chr8 (80-108)||(8137492-8137520)
chr8 (24-79)||(24307838-24307893)
[»] chr6 (14 HSPs)
chr6 (24-76)||(22880703-22880755)
chr6 (24-80)||(32869677-32869733)
chr6 (24-79)||(29857827-29857882)
chr6 (24-80)||(17598553-17598609)
chr6 (24-82)||(15508069-15508127)
chr6 (24-82)||(31109445-31109503)
chr6 (42-79)||(6209528-6209565)
chr6 (24-79)||(15990087-15990142)
chr6 (24-79)||(30341405-30341460)
chr6 (24-79)||(31976248-31976303)
chr6 (24-79)||(11427616-11427673)
chr6 (38-79)||(31110818-31110859)
chr6 (27-80)||(31953078-31953131)
chr6 (80-108)||(10146910-10146938)
[»] scaffold0237 (1 HSPs)
scaffold0237 (24-79)||(4029-4084)
[»] scaffold1268 (1 HSPs)
scaffold1268 (24-80)||(974-1030)
[»] scaffold1267 (1 HSPs)
scaffold1267 (24-80)||(974-1030)


Alignment Details
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 38837272 - 38837217
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38837272 ttgtgtaggtgtacaagggtgtattgccacctaagggtgtctatgtatcattactc 38837217  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 4999559 - 4999614
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  || |||||||||||||||||||||||||||||||||||||||    
T  4999559 ttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 4999614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 11044266 - 11044188
Alignment:
Q  1 tgtgcggggtccacgtgactacgttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||||||||||||||     ||||||  |||| |||||||||| ||||||||||||||||||||||||||    
T  11044266 tgtgcggggtccacgtgactacgtgtcaggggtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactc 11044188  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 35137588 - 35137532
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    ||||||||||||  ||||||||||||||| |||||||||||||| ||||||||||||    
T  35137588 ttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatttatcattactca 35137532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 3434617 - 3434562
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  ||||||||||||||| |||||| |||||||||||||||||||    
T  3434617 ttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactc 3434562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 7389444 - 7389389
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  ||| ||||||||||| ||||||||||||||||||||||||||    
T  7389444 ttgtgtgggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 7389389  T

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Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 36361958 - 36362013
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  |||| |||||||||| ||||||||||||||||||||||||||    
T  36361958 ttgtgtgggtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactc 36362013  T

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Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 38267095 - 38267037
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactcaaa 82  Q
    ||||||||||||  |||||||||||| ||  ||||||||||||||||||||||||||||    
T  38267095 ttgtgtgggtgtcaaagggtgtattgtcacataagggtgtctatgtatcattactcaaa 38267037  T

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Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 8080442 - 8080483
Alignment:
Q  38 aagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  8080442 aagggtgtattgccacctaagggtgtctatgtatcattactc 8080483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 19329897 - 19329841
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    ||||||||||||  || |||||||||||| |||||| ||||||||||||||||||||    
T  19329897 ttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcattactca 19329841  T

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Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 36362081 - 36362026
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  |||| |||||| ||| ||||||||||||||||||||||||||    
T  36362081 ttgtgtgggtgtcaaaggatgtattaccacctaagggtgtctatgtatcattactc 36362026  T

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Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 3784050 - 3783998
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcatta 76  Q
    ||||||||||||  || | |||||||||| |||||||||||||||||||||||    
T  3784050 ttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcatta 3783998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 31735939 - 31735883
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    ||||||||||||  ||| ||||||||||| |||||| |||||||||||||| |||||    
T  31735939 ttgtgtgggtgttaaagagtgtattgccacctaaggatgtctatgtatcataactca 31735883  T

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Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 35468919 - 35468955
Alignment:
Q  43 tgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||||||| |||||||||||||||||||    
T  35468919 tgtattgccatctaaggatgtctatgtatcattactc 35468955  T

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Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 19436232 - 19436287
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  || ||||||||| || |||||| |||||||||||||||||||    
T  19436232 ttgtgtgggtgtcaaaaggtgtattgtcacctaaggatgtctatgtatcattactc 19436287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 22343416 - 22343361
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  | ||||||||||||| |||||||||| |||||||||| ||||    
T  22343416 ttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 22343361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 40957762 - 40957707
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    |||||||||| |  ||| ||||||||||| ||||| ||||||||||||||||||||    
T  40957762 ttgtgtgggtatcaaagagtgtattgccacctaagagtgtctatgtatcattactc 40957707  T

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Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 46374847 - 46374902
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  |||||||| |||||| |||||| |||||||||||||| ||||    
T  46374847 ttgtgtgggtgttaaagggtgtgttgccacctaaggatgtctatgtatcataactc 46374902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 32951538 - 32951592
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattact 78  Q
    |||||||| |||  |||| ||||||| |||||||| |||||||||||||||||||    
T  32951538 ttgtgtggatgttaaaggatgtattgtcatctaagagtgtctatgtatcattact 32951592  T

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Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 8238268 - 8238211
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatcta-agggtgtctatgtatcattactca 80  Q
    ||||||||||||  ||||||||||||||| ||| ||||||| |||||||||| |||||    
T  8238268 ttgtgtgggtgtcaaagggtgtattgccacctacagggtgtttatgtatcataactca 8238211  T

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Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 10343626 - 10343663
Alignment:
Q  42 gtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  10343626 gtgtatttccacctaagggtgtctatgtatcattactc 10343663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 110
Target Start/End: Complemental strand, 16686219 - 16686191
Alignment:
Q  82 ataattttaatcaaaatttcataaaaaaa 110  Q
    |||||||||||||||||||||||||||||    
T  16686219 ataattttaatcaaaatttcataaaaaaa 16686191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 110
Target Start/End: Complemental strand, 17660455 - 17660427
Alignment:
Q  82 ataattttaatcaaaatttcataaaaaaa 110  Q
    |||||||||||||||||||||||||||||    
T  17660455 ataattttaatcaaaatttcataaaaaaa 17660427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 21234456 - 21234400
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    ||||||| ||||  |||||||||||| || |||||| |||||||||||||| |||||    
T  21234456 ttgtgtgagtgtcaaagggtgtattgtcacctaaggatgtctatgtatcataactca 21234400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 108
Target Start/End: Original strand, 32310915 - 32310943
Alignment:
Q  80 aaataattttaatcaaaatttcataaaaa 108  Q
    |||||||||||||||||||||||||||||    
T  32310915 aaataattttaatcaaaatttcataaaaa 32310943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 108
Target Start/End: Complemental strand, 36924470 - 36924442
Alignment:
Q  80 aaataattttaatcaaaatttcataaaaa 108  Q
    |||||||||||||||||||||||||||||    
T  36924470 aaataattttaatcaaaatttcataaaaa 36924442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 39255985 - 39256025
Alignment:
Q  41 ggtgtattgccatctaagggtgtctatgtatcattactcaa 81  Q
    |||||||||||| |||||| |||||||||||||| ||||||    
T  39255985 ggtgtattgccacctaaggttgtctatgtatcataactcaa 39256025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 42044412 - 42044467
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  42044412 ttgtgtgggtgtacaaggatgtattgccacctaagggtgtctatgtatcattactc 42044467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 6034099 - 6034042
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactcaa 81  Q
    ||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||    
T  6034099 ttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactcaa 6034042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 11511510 - 11511575
Alignment:
Q  27 tgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactcaaataattttaat 92  Q
    |||||||||  ||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||    
T  11511510 tgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactcaaaaaattataat 11511575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 29234304 - 29234345
Alignment:
Q  38 aagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  29234304 aagggtgtattgccatctaagggtgtctatgtatcattactc 29234345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 480492 - 480547
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  |||||||||||| || ||||||||||||||||||||||||||    
T  480492 ttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactc 480547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 48183094 - 48183149
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  |||||||||||||||  |||||||||||||||||||||||||    
T  48183094 ttgtgtgggtgtcaaagggtgtattgccacgtaagggtgtctatgtatcattactc 48183149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 50052473 - 50052528
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  ||||||||||||||| |||||| |||||||||||||||||||    
T  50052473 ttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactc 50052528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 54473578 - 54473636
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactcaaa 82  Q
    ||||||||||||  || ||||||||| || |||||||||||||||||||||||||||||    
T  54473578 ttgtgtgggtgtcaaatggtgtattgtcacctaagggtgtctatgtatcattactcaaa 54473636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 50526216 - 50526273
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactcaa 81  Q
    ||||||||||||  ||||||||||||||| |||| | |||||||||||||||||||||    
T  50526216 ttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactcaa 50526273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 3481709 - 3481653
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    ||||||||||||  ||| ||||||||||| |||| ||||||||||||||||||||||    
T  3481709 ttgtgtgggtgtcaaagagtgtattgccacctaaaggtgtctatgtatcattactca 3481653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 24995155 - 24995207
Alignment:
Q  27 tgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    |||||||||  ||||||||||||||||||||||||||| || |||||||||||    
T  24995155 tgtgggtgtcaaagggtgtattgccatctaagggtgtccatatatcattactc 24995207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 41236402 - 41236342
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactcaaata 84  Q
    |||||||| |||  || |||||||||||| |||||||||||||||||||||||||| ||||    
T  41236402 ttgtgtggatgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactcgaata 41236342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 23608290 - 23608235
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  || ||||||||| ||||||||||||||||| |||||||||||    
T  23608290 ttgtgtgggtgtcaaatggtgtattgtcatctaagggtgtctatatatcattactc 23608235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 29239941 - 29239886
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    |||||||| |||  || |||||||||||| ||||||||||||||||||||||||||    
T  29239941 ttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcattactc 29239886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 40574834 - 40574778
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    ||||||||||||  ||||||||||| ||| |||||| |||||||||||||| |||||    
T  40574834 ttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataactca 40574778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 55475246 - 55475191
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  ||||||||||||||| |||||| ||| |||||||||| ||||    
T  55475246 ttgtgtgggtgtcaaagggtgtattgccacctaaggatgtttatgtatcataactc 55475191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 31910247 - 31910190
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactcaa 81  Q
    ||||||||||||  ||| |||||||| || |||||| |||||||||||||| ||||||    
T  31910247 ttgtgtgggtgtcaaagagtgtattgtcacctaaggatgtctatgtatcataactcaa 31910190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 108
Target Start/End: Complemental strand, 43028117 - 43028089
Alignment:
Q  80 aaataattttaatcaaaatttcataaaaa 108  Q
    |||||||||||||||||||||||||||||    
T  43028117 aaataattttaatcaaaatttcataaaaa 43028089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 7465780 - 7465835
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  7465780 ttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 7465835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 17473075 - 17473020
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  17473075 ttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 17473020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 9058535 - 9058480
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||    
T  9058535 ttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 9058480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 33436145 - 33436200
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||    
T  33436145 ttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 33436200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 40701533 - 40701475
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactcaaa 82  Q
    ||||||||||||  || |||||||||||| |||||||||||||||||||||||||||||    
T  40701533 ttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactcaaa 40701475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 28381700 - 28381756
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    ||||||||||||  || |||||||||||| |||||||||||||||||||||||||||    
T  28381700 ttgtgtgggtgtcgaaaggtgtattgccacctaagggtgtctatgtatcattactca 28381756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 28863510 - 28863458
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcatta 76  Q
    ||||||||||||  ||||||||||||||| |||||||||||||||||||||||    
T  28863510 ttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 28863458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 30915504 - 30915463
Alignment:
Q  38 aagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  30915504 aagggtgtattgccacctaagggtgtctatgtatcattactc 30915463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 5574536 - 5574588
Alignment:
Q  27 tgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    |||||||||  ||||||||||||||| ||||| ||||||||||||||||||||    
T  5574536 tgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactc 5574588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 13438398 - 13438342
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    ||||||||||||  |||| ||||||| || |||||||||||||||||||||||||||    
T  13438398 ttgtgtgggtgtcaaaggatgtattgtcacctaagggtgtctatgtatcattactca 13438342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 19930865 - 19930917
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcatta 76  Q
    |||||||| |||  ||||||||||||||| |||||||||||||||||||||||    
T  19930865 ttgtgtggatgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 19930917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 27864759 - 27864703
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    |||||||| |||  |||||||||||||||  ||||||||||||||||||||||||||    
T  27864759 ttgtgtggatgtcaaagggtgtattgccacataagggtgtctatgtatcattactca 27864703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 33436263 - 33436211
Alignment:
Q  27 tgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    |||||||||  || ||||||||||||||||||| |||||||||||||||||||    
T  33436263 tgtgggtgtcaaaaggtgtattgccatctaaggatgtctatgtatcattactc 33436211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 40613947 - 40614003
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    ||||||||||||  ||||||||||||||| |||||| |||||||||||||| |||||    
T  40613947 ttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactca 40614003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 10249427 - 10249482
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  || ||||||||| || ||||||||||||||||||||||||||    
T  10249427 ttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactc 10249482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 32505693 - 32505748
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  || ||||||||| || ||||||||||||||||||||||||||    
T  32505693 ttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactc 32505748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 38273187 - 38273242
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  |||||||||||||||||||||  |||||||||||||| ||||    
T  38273187 ttgtgtgggtgttaaagggtgtattgccatctaagaatgtctatgtatcataactc 38273242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 4060740 - 4060683
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactcaa 81  Q
    |||||||| |||  || ||||||||| || ||||||||||||||||||||||||||||    
T  4060740 ttgtgtggatgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactcaa 4060683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 41575178 - 41575138
Alignment:
Q  38 aagggtgtattgccatctaagggtgtctatgtatcattact 78  Q
    ||||||||||| |||||||||| ||||||||||||||||||    
T  41575178 aagggtgtattaccatctaaggatgtctatgtatcattact 41575138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 26891549 - 26891604
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  | ||||||||||||| ||||||||| ||||||||||| ||||    
T  26891549 ttgtgtgggtgtctaggggtgtattgccacctaagggtggctatgtatcataactc 26891604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 38882859 - 38882913
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    |||||||| |||  |||||| |||||||| ||||||||||||||||||||||||||    
T  38882859 ttgtgtggatgtcaaagggt-tattgccacctaagggtgtctatgtatcattactc 38882913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 110
Target Start/End: Complemental strand, 7419006 - 7418976
Alignment:
Q  80 aaataattttaatcaaaatttcataaaaaaa 110  Q
    |||||||||||||||||||||||||||||||    
T  7419006 aaataattttaatcaaaatttcataaaaaaa 7418976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 109
Target Start/End: Original strand, 23914903 - 23914933
Alignment:
Q  79 caaataattttaatcaaaatttcataaaaaa 109  Q
    |||||||||||||||||||||||||||||||    
T  23914903 caaataattttaatcaaaatttcataaaaaa 23914933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 3440034 - 3439985
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatca 73  Q
    |||||||||||| || | ||||||||||| ||||||||||||| ||||||    
T  3440034 ttgtgtgggtgtccaggagtgtattgccacctaagggtgtctacgtatca 3439985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 20700856 - 20700815
Alignment:
Q  38 aagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    |||||||||||||||  ||||| |||||||||||||||||||    
T  20700856 aagggtgtattgccacataaggatgtctatgtatcattactc 20700815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 115
Target Start/End: Complemental strand, 22881489 - 22881460
Alignment:
Q  86 ttttaatcaaaatttcataaaaaaacaccg 115  Q
    ||||||||||||||||||||||||||||||    
T  22881489 ttttaatcaaaatttcataaaaaaacaccg 22881460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 108
Target Start/End: Original strand, 8785366 - 8785394
Alignment:
Q  80 aaataattttaatcaaaatttcataaaaa 108  Q
    |||||||||||||||||||||||||||||    
T  8785366 aaataattttaatcaaaatttcataaaaa 8785394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 108
Target Start/End: Complemental strand, 31126590 - 31126562
Alignment:
Q  80 aaataattttaatcaaaatttcataaaaa 108  Q
    |||||||||||||||||||||||||||||    
T  31126590 aaataattttaatcaaaatttcataaaaa 31126562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 43490176 - 43490120
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    ||||||||||||  | |||||||||| || |||||||||| |||||||||| |||||    
T  43490176 ttgtgtgggtgtcaaggggtgtattgtcacctaagggtgtttatgtatcataactca 43490120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 36875624 - 36875702
Alignment:
Q  1 tgtgcggggtccacgtgactacgtt-gtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattact 78  Q
    |||||||| ||||||||||||  || ||||||||||  ||||||||||||||| |||||||||||||||||||||||||    
T  36875624 tgtgcgggatccacgtgactatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattact 36875702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 35785254 - 35785197
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactcaa 81  Q
    ||||||||||||  || |||||||||||| ||||||||||||||||||||||||||||    
T  35785254 ttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactcaa 35785197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 18520929 - 18520981
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcatta 76  Q
    ||||||||||||  ||||||||||||||| |||||||||||||||||||||||    
T  18520929 ttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 18520981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 33149683 - 33149739
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    ||||||||||||  ||||||||||| ||| |||||||||||||||||||||||||||    
T  33149683 ttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactca 33149739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 40145462 - 40145406
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    |||||||| |||  ||||||||||||||| |||||||||||||||||||||||||||    
T  40145462 ttgtgtggatgttaaagggtgtattgccacctaagggtgtctatgtatcattactca 40145406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 2740329 - 2740274
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  ||||||||||||||| |||||| |||||||||||||||||||    
T  2740329 ttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactc 2740274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 36732987 - 36733042
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  ||||||||||||| | ||||||||||||||||||||||||||    
T  36732987 ttgtgtgggtgtcaaagggtgtattgctacctaagggtgtctatgtatcattactc 36733042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 14831866 - 14831813
Alignment:
Q  27 tgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    |||||||||  ||||||||||||||| ||||| |||||||||||||||||||||    
T  14831866 tgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactca 14831813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 28177830 - 28177774
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    ||||||||||||  ||||||||||||||| |||||| |||||||||||||| |||||    
T  28177830 ttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactca 28177774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 42414347 - 42414403
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    ||||||||||||  ||||||||||||||| |||  ||||||||||||||||||||||    
T  42414347 ttgtgtgggtgtcaaagggtgtattgccacctactggtgtctatgtatcattactca 42414403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 3921310 - 3921365
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  | ||||||||||||| |||||||||| |||||||||| ||||    
T  3921310 ttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 3921365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 13811707 - 13811652
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  || | |||||||||| ||||||||||||||||||| ||||||    
T  13811707 ttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatctttactc 13811652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 35943937 - 35943992
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  || | |||||||||| ||||||||||||||||||||| ||||    
T  35943937 ttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatcataactc 35943992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 80
Target Start/End: Complemental strand, 26720557 - 26720515
Alignment:
Q  38 aagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    ||||||||||||||| |||||| |||||||||||||| |||||    
T  26720557 aagggtgtattgccacctaaggatgtctatgtatcataactca 26720515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 80
Target Start/End: Complemental strand, 26990306 - 26990264
Alignment:
Q  38 aagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    ||||||||||||||| |||||| |||||||||||||| |||||    
T  26990306 aagggtgtattgccacctaaggatgtctatgtatcataactca 26990264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 115
Target Start/End: Complemental strand, 32234486 - 32234457
Alignment:
Q  86 ttttaatcaaaatttcataaaaaaacaccg 115  Q
    ||||||||||||||||||||||||||||||    
T  32234486 ttttaatcaaaatttcataaaaaaacaccg 32234457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 109
Target Start/End: Complemental strand, 40693192 - 40693163
Alignment:
Q  80 aaataattttaatcaaaatttcataaaaaa 109  Q
    ||||||||||||||||||||||||||||||    
T  40693192 aaataattttaatcaaaatttcataaaaaa 40693163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 109
Target Start/End: Complemental strand, 43397657 - 43397628
Alignment:
Q  80 aaataattttaatcaaaatttcataaaaaa 109  Q
    ||||||||||||||||||||||||||||||    
T  43397657 aaataattttaatcaaaatttcataaaaaa 43397628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 108
Target Start/End: Complemental strand, 3945051 - 3945023
Alignment:
Q  80 aaataattttaatcaaaatttcataaaaa 108  Q
    |||||||||||||||||||||||||||||    
T  3945051 aaataattttaatcaaaatttcataaaaa 3945023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 9474921 - 9474978
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactcaa 81  Q
    ||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||    
T  9474921 ttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactcaa 9474978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 2581970 - 2581915
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||    
T  2581970 ttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 2581915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 47452365 - 47452421
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    ||||||||||||  ||||||||||| ||| |||||||||||||||||||||||||||    
T  47452365 ttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactca 47452421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 3000374 - 3000319
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  ||||||||||||||| |||||||||| |||||||||||||||    
T  3000374 ttgtgtgggtgtcaaagggtgtattgccacctaagggtgtttatgtatcattactc 3000319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 48716327 - 48716385
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactcaaa 82  Q
    |||||||| |||  || |||||||||||| |||||||||||||||||||||||||||||    
T  48716327 ttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcattactcaaa 48716385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 27564780 - 27564836
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    ||||||||||||  || |||||||||||| |||||| ||||||||||||||||||||    
T  27564780 ttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcattactca 27564836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 32813302 - 32813247
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  ||||||||||||||| |||||| |||||||||||||| ||||    
T  32813302 ttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 32813247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 335
Target Start/End: Complemental strand, 34712150 - 34712091
Alignment:
Q  276 ggctgtgaagaggtgaagaaagtgtggagggcaacatgattgtgggacatagtcagagat 335  Q
    ||||| ||||||| ||||||||||||||||||| || | ||||||||| |||||||||||    
T  34712150 ggctgcgaagaggggaagaaagtgtggagggcagcaggtttgtgggacgtagtcagagat 34712091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 38595209 - 38595154
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  ||||||||||||||| |||| ||||| |||||||||||||||    
T  38595209 ttgtgtgggtgtcaaagggtgtattgccacctaaaggtgtttatgtatcattactc 38595154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 38632366 - 38632421
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    |||||||| |||  || |||||||||||| ||||||||||||||||||||||||||    
T  38632366 ttgtgtggatgttaaaaggtgtattgccacctaagggtgtctatgtatcattactc 38632421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 41758860 - 41758805
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    |||||||| |||  |||||||||||||||| ||| |||||||||||||||||||||    
T  41758860 ttgtgtggttgtcaaagggtgtattgccatttaatggtgtctatgtatcattactc 41758805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 50591045 - 50591104
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactcaaat 83  Q
    ||||||||||||  | ||||||||||||| |||||||||| |||||||||| ||||||||    
T  50591045 ttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactcaaat 50591104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 51898728 - 51898783
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  ||||||||||||||| |||| | |||||||||||||||||||    
T  51898728 ttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactc 51898783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 37649253 - 37649197
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    ||||||||||||  ||| ||||||||||| |||| | ||||||||||||||||||||    
T  37649253 ttgtgtgggtgtcaaagagtgtattgccacctaaagatgtctatgtatcattactca 37649197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 8346433 - 8346488
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  || |||||||||||| |||| |||| ||||||||||||||||    
T  8346433 ttgtgtgggtgtcaaatggtgtattgccacctaaaggtgactatgtatcattactc 8346488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 50630499 - 50630458
Alignment:
Q  38 aagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    |||| |||||||||| |||||||| |||||||||||||||||    
T  50630499 aaggatgtattgccacctaagggtatctatgtatcattactc 50630458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 109
Target Start/End: Complemental strand, 8723166 - 8723138
Alignment:
Q  81 aataattttaatcaaaatttcataaaaaa 109  Q
    |||||||||||||||||||||||||||||    
T  8723166 aataattttaatcaaaatttcataaaaaa 8723138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 108
Target Start/End: Original strand, 9848517 - 9848545
Alignment:
Q  80 aaataattttaatcaaaatttcataaaaa 108  Q
    |||||||||||||||||||||||||||||    
T  9848517 aaataattttaatcaaaatttcataaaaa 9848545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 26440789 - 26440741
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatc 72  Q
    ||||||||||||  |||||||||||| ||||||||| ||||||| ||||    
T  26440789 ttgtgtgggtgttaaagggtgtattgtcatctaaggatgtctatctatc 26440741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 108
Target Start/End: Original strand, 49840215 - 49840243
Alignment:
Q  80 aaataattttaatcaaaatttcataaaaa 108  Q
    |||||||||||||||||||||||||||||    
T  49840215 aaataattttaatcaaaatttcataaaaa 49840243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 53982066 - 53982010
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    ||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||    
T  53982066 ttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactca 53982010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 11095398 - 11095453
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||    
T  11095398 ttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 11095453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 49607469 - 49607414
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||    
T  49607469 ttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 49607414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 33644255 - 33644198
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactcaa 81  Q
    ||||||||||||  ||||||||||||||| | ||||||||||||||||||||||||||    
T  33644255 ttgtgtgggtgtcaaagggtgtattgccacccaagggtgtctatgtatcattactcaa 33644198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 54868940 - 54868995
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  || |||||||||||| ||||||||||||||||||||||||||    
T  54868940 ttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 54868995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 52629355 - 52629305
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcat 74  Q
    ||||||||||||  ||||||||||||||| |||||||||||||||||||||    
T  52629355 ttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 52629305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 26141577 - 26141633
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    ||||||||||||  ||||||||||||||| |||||| |||||||||||||| |||||    
T  26141577 ttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactca 26141633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 8076448 - 8076393
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  ||||||||| ||||| |||||||||| |||||||||||||||    
T  8076448 ttgtgtgggtgtcaaagggtgtactgccacctaagggtgtttatgtatcattactc 8076393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 17470460 - 17470405
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  || |||||||||||| |||| |||||||||||||||||||||    
T  17470460 ttgtgtgggtgttaaaaggtgtattgccacctaaaggtgtctatgtatcattactc 17470405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 27714936 - 27714991
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  ||||||||||| ||| |||| |||||||||||||||||||||    
T  27714936 ttgtgtgggtgtcaaagggtgtattaccacctaaaggtgtctatgtatcattactc 27714991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 33118896 - 33118951
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  |||||||||||| || ||||||||||||||||||||| ||||    
T  33118896 ttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcataactc 33118951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 26754750 - 26754700
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcat 74  Q
    |||||||| ||| |||||||||||||||| ||||||||||||||| |||||    
T  26754750 ttgtgtggatgtccaagggtgtattgccacctaagggtgtctatgaatcat 26754700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 31456744 - 31456690
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattact 78  Q
    ||||||||||||  ||||||||||||||  ||| |||||||||||||||||||||    
T  31456744 ttgtgtgggtgtcaaagggtgtattgccgcctatgggtgtctatgtatcattact 31456690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 45058601 - 45058654
Alignment:
Q  27 tgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactcaa 81  Q
    ||||||||| |||||||||||||||| |||||||||| |||||||||| ||||||    
T  45058601 tgtgggtgt-caagggtgtattgccacctaagggtgtttatgtatcataactcaa 45058654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 14623887 - 14623939
Alignment:
Q  27 tgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    |||||||||  | ||||||||||||| |||||| |||||||||||||||||||    
T  14623887 tgtgggtgtcaaggggtgtattgccacctaaggatgtctatgtatcattactc 14623939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 24700002 - 24700054
Alignment:
Q  27 tgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    |||||||||  || |||||||||||| |||||| |||||||||||||||||||    
T  24700002 tgtgggtgtcaaaaggtgtattgccaactaaggatgtctatgtatcattactc 24700054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 36707469 - 36707524
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    |||||||| |||  |||||||||||| || |||||||| |||||||||||||||||    
T  36707469 ttgtgtggatgtcaaagggtgtattgtcacctaagggtatctatgtatcattactc 36707524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 47531920 - 47531865
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    |||||||| |||  || ||||||||||||||||||| |||||||||||||| ||||    
T  47531920 ttgtgtggatgttaaaaggtgtattgccatctaaggatgtctatgtatcataactc 47531865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 51419405 - 51419460
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  |||| ||||||| ||||||||| |||||||||||||| ||||    
T  51419405 ttgtgtgggtgttaaaggatgtattgtcatctaaggatgtctatgtatcataactc 51419460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 30801778 - 30801836
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactcaaa 82  Q
    |||||||||| |  |||||||||||  || |||||||||||||||||||||| ||||||    
T  30801778 ttgtgtgggtatcaaagggtgtattatcacctaagggtgtctatgtatcattgctcaaa 30801836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 48587150 - 48587187
Alignment:
Q  38 aagggtgtattgccatctaagggtgtctatgtatcatt 75  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  48587150 aagggtgtattgccacctaagggtatctatgtatcatt 48587187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 8956814 - 8956762
Alignment:
Q  27 tgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    |||||||||  |||| ||||||||||  ||||| |||||||||||||||||||    
T  8956814 tgtgggtgtcaaaggatgtattgccacataaggatgtctatgtatcattactc 8956762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 35536678 - 35536626
Alignment:
Q  27 tgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    |||||||||  || ||||||||||||  ||||| |||||||||||||||||||    
T  35536678 tgtgggtgtcaaatggtgtattgccacataaggatgtctatgtatcattactc 35536626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 108
Target Start/End: Complemental strand, 53995156 - 53995128
Alignment:
Q  80 aaataattttaatcaaaatttcataaaaa 108  Q
    |||||||||||||||||||||||||||||    
T  53995156 aaataattttaatcaaaatttcataaaaa 53995128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 504166 - 504222
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    ||||||||||||  || |||||||||||| |||||||||||||||||||||||||||    
T  504166 ttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactca 504222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 15197388 - 15197332
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    ||||||||||||  ||||||||||||||| ||||| |||||||||||||||||||||    
T  15197388 ttgtgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactca 15197332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 34012341 - 34012397
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    ||||||||||||  ||||||||||| ||| |||||||||||||||||||||||||||    
T  34012341 ttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactca 34012397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 1179985 - 1180040
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  ||||||||||| ||| ||||||||||||||||||||||||||    
T  1179985 ttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 1180040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 12831102 - 12831047
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  |||||||||||| || ||||||||||||||||||||||||||    
T  12831102 ttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactc 12831047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 40423988 - 40424046
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactcaaa 82  Q
    |||||||| |||  ||||||||||||||| |||||||| ||||||||||||||||||||    
T  40423988 ttgtgtggatgtcaaagggtgtattgccacctaagggtatctatgtatcattactcaaa 40424046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 23122642 - 23122698
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    ||||||||||||  || ||||||||||||  ||||||||||||||||||||||||||    
T  23122642 ttgtgtgggtgtcaaaaggtgtattgccacttaagggtgtctatgtatcattactca 23122698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 43414626 - 43414682
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    ||||||||||||  |||||||| ||||||||||||| |||||||||||||| |||||    
T  43414626 ttgtgtgggtgtcaaagggtgtgttgccatctaaggatgtctatgtatcataactca 43414682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 14547977 - 14547922
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  || |||||||||||| ||||||||||||||||||| ||||||    
T  14547977 ttgtgtgggtgtcaaatggtgtattgccacctaagggtgtctatgtatctttactc 14547922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 37038534 - 37038479
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  ||||||||||||||| |||| | |||||||||||||||||||    
T  37038534 ttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactc 37038479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 44507132 - 44507187
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  ||| ||||||| ||| ||||||||||||||||||||||||||    
T  44507132 ttgtgtgggtgttaaagagtgtattaccacctaagggtgtctatgtatcattactc 44507187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 5957885 - 5957831
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattact 78  Q
    ||||||||||||  ||||||||||||||| |||||  ||||||||||||||||||    
T  5957885 ttgtgtgggtgtcaaagggtgtattgccacctaagaatgtctatgtatcattact 5957831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 9122234 - 9122196
Alignment:
Q  40 gggtgtattgccatctaagggtgtctatgtatcattact 78  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  9122234 gggtgtattgccacctaagggtgtctatgtatcattact 9122196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 4854922 - 4854963
Alignment:
Q  38 aagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||||| |||||| |||||||||||||||||||    
T  4854922 aagggtgtattgccacctaaggatgtctatgtatcattactc 4854963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 15048240 - 15048289
Alignment:
Q  38 aagggtgtattgccatctaagggtgtctatgtatcattactcaaataatt 87  Q
    ||||||||||||||| |||||| |||||||||||||| |||||| |||||    
T  15048240 aagggtgtattgccacctaaggatgtctatgtatcataactcaattaatt 15048289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 20074982 - 20075035
Alignment:
Q  27 tgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    |||||||||  ||| ||||||||||| |||||| ||||||||||||||||||||    
T  20074982 tgtgggtgtcaaagagtgtattgccacctaaggatgtctatgtatcattactca 20075035  T

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Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 16383432 - 16383377
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  | ||||||||||||| |||||||||| |||||||||| ||||    
T  16383432 ttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 16383377  T

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Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 34307271 - 34307216
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  | ||||||||||||| |||||||||| |||||||||| ||||    
T  34307271 ttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 34307216  T

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Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 10621132 - 10621182
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcat 74  Q
    ||||||||||||  ||||||||||| ||| |||||| ||||||||||||||    
T  10621132 ttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcat 10621182  T

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Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 30479533 - 30479574
Alignment:
Q  38 aagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||||| |||||||||| |||||||||| ||||    
T  30479533 aagggtgtattgccacctaagggtgtttatgtatcataactc 30479574  T

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Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 108
Target Start/End: Complemental strand, 8137520 - 8137492
Alignment:
Q  80 aaataattttaatcaaaatttcataaaaa 108  Q
    |||||||||||||||||||||||||||||    
T  8137520 aaataattttaatcaaaatttcataaaaa 8137492  T

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Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 24307838 - 24307893
Alignment:
Q  24 ttgtgtgggtgtacaaggg-tgtattgccatctaagggtgtctatgtatcattactc 79  Q
    |||||||||||| |||||| |||||||||| |||||||||| |||||||||| ||||    
T  24307838 ttgtgtgggtgt-caagggatgtattgccacctaagggtgtttatgtatcataactc 24307893  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 22880703 - 22880755
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcatta 76  Q
    ||||||||||||  ||||||||||||||| |||||||||||||||||||||||    
T  22880703 ttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 22880755  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 32869733 - 32869677
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    ||||||||||||  ||||||||||||||| ||||||||||||||||||| |||||||    
T  32869733 ttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatctttactca 32869677  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 29857882 - 29857827
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  || ||||||||||||||||| |||||||||||||||||||||    
T  29857882 ttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcattactc 29857827  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 17598609 - 17598553
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    ||||||||||||  || | |||||||||| |||||||||||||||||||||||||||    
T  17598609 ttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcattactca 17598553  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 15508069 - 15508127
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactcaaa 82  Q
    ||||||||||||  | ||||||||||||| |||||||||| |||||||||| |||||||    
T  15508069 ttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactcaaa 15508127  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 31109445 - 31109503
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactcaaa 82  Q
    |||||||| |||  ||||||||||||||| ||||||||||||||  |||||||||||||    
T  31109445 ttgtgtggatgtcaaagggtgtattgccacctaagggtgtctattaatcattactcaaa 31109503  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 6209528 - 6209565
Alignment:
Q  42 gtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  6209528 gtgtattgccacctaagggtgtctatgtatcattactc 6209565  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 15990087 - 15990142
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  | ||||||||||||| |||||||||| |||||||||| ||||    
T  15990087 ttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 15990142  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 30341405 - 30341460
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  | ||||||||||||| |||||||||| |||||||||| ||||    
T  30341405 ttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 30341460  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 31976303 - 31976248
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  |||||| |||||||| |||||| |||||||||||||| ||||    
T  31976303 ttgtgtgggtgttaaagggtatattgccacctaaggatgtctatgtatcataactc 31976248  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 11427673 - 11427616
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaag--ggtgtctatgtatcattactc 79  Q
    ||||||||||||  |||| |||||||||| |||||  |||||||||||||||||||||    
T  11427673 ttgtgtgggtgtcaaaggatgtattgccacctaagagggtgtctatgtatcattactc 11427616  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 31110818 - 31110859
Alignment:
Q  38 aagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||||| |||||| |||||||||||||| ||||    
T  31110818 aagggtgtattgccacctaaggatgtctatgtatcataactc 31110859  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 31953078 - 31953131
Alignment:
Q  27 tgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    |||||||||  | ||||||||||||| |||||| ||||||| ||||||||||||    
T  31953078 tgtgggtgtcaaggggtgtattgccacctaaggatgtctatctatcattactca 31953131  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 108
Target Start/End: Original strand, 10146910 - 10146938
Alignment:
Q  80 aaataattttaatcaaaatttcataaaaa 108  Q
    |||||||||||||||||||||||||||||    
T  10146910 aaataattttaatcaaaatttcataaaaa 10146938  T

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Target: scaffold0237 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 4084 - 4029
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactc 79  Q
    ||||||||||||  || ||||||||||||||||| |||||||||||||||||||||    
T  4084 ttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcattactc 4029  T

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Target: scaffold1268 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 974 - 1030
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    |||||||| |||  ||||||||||||||| |||| | ||||||||||||||||||||    
T  974 ttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatcattactca 1030  T

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Target: scaffold1267 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 974 - 1030
Alignment:
Q  24 ttgtgtgggtgtacaagggtgtattgccatctaagggtgtctatgtatcattactca 80  Q
    |||||||| |||  ||||||||||||||| |||| | ||||||||||||||||||||    
T  974 ttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatcattactca 1030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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