View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18315_high_44 (Length: 352)

Name: NF18315_high_44
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18315_high_44
NF18315_high_44
[»] chr2 (11 HSPs)
chr2 (48-336)||(10470605-10470893)
chr2 (47-278)||(10542614-10542845)
chr2 (164-336)||(10505198-10505370)
chr2 (203-326)||(10486682-10486804)
chr2 (93-216)||(9082736-9082859)
chr2 (226-329)||(7483396-7483500)
chr2 (97-166)||(10847034-10847104)
chr2 (47-217)||(9077412-9077582)
chr2 (260-326)||(10491161-10491230)
chr2 (72-174)||(10858526-10858629)
chr2 (240-336)||(10858371-10858470)
[»] chr4 (1 HSPs)
chr4 (68-197)||(17733856-17733986)
[»] chr1 (1 HSPs)
chr1 (68-197)||(18489334-18489464)
[»] chr5 (1 HSPs)
chr5 (47-250)||(33579733-33579937)


Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 48 - 336
Target Start/End: Complemental strand, 10470893 - 10470605
Alignment:
Q  48 ggcatattgtgatgttaattcagcctctaatgtagataacgtgaagtctacttccggggcattcttatgtctttgtcctaacttggttgttcatagccct 147  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||  | |||||||| ||||||||||||||||||||||||||||||||||    
T  10470893 ggcatattgtgatgttgattcagcctctaatgtagataacgtgaagtctacttttgaggcattctcatgtctttgtcctaacttggttgttcatagccct 10470794  T
Q  148 agctacttcaaggtgttatccttacttcatgaactgcaagttctcatctccacgtcaatcatttattgcattagtagaagcactttcgcttagagtcgta 247  Q
    ||||||||||||||||||| |||||||||||| |||||||||| |||||||||| |||||||||||||||||||||| ||||||| ||||||||||| ||    
T  10470793 agctacttcaaggtgttatgcttacttcatgagctgcaagttcccatctccacggcaatcatttattgcattagtagcagcacttacgcttagagtcata 10470694  T
Q  248 atcacattcggcattctagaaccaagcacatggaccttgatttgttgtttattcgagaaaaagatcttgccaaatctctagttgtgact 336  Q
    |||||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||||||||  |||||||||| |||||||||||||    
T  10470693 atcacatttggcattctagaaccaaacacctagaccttgatttgttgtttgttcgagaaaaagtccttgccaaatttctagttgtgact 10470605  T

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Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 47 - 278
Target Start/End: Complemental strand, 10542845 - 10542614
Alignment:
Q  47 aggcatattgtgatgttaattcagcctctaatgtagataacgtgaagtctacttccggggcattcttatgtctttgtcctaacttggttgttcatagccc 146  Q
    ||||||||||||||||| ||||||||||| |||||||||| |||| ||| |||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  10542845 aggcatattgtgatgttgattcagcctctgatgtagataatgtgaggtcgacttccggggcattcttatgtcttggtcctaacttggtggttcatagccc 10542746  T
Q  147 tagctacttcaaggtgttatccttacttcatgaactgcaagttctcatctccacgtcaatcatttattgcattagtagaagcactttcgcttagagtcgt 246  Q
     ||| ||||||| |||||||||||||| ||||| |||||||||| |||||||  |  ||| |||||| ||  ||||  |||||||||   || ||||| |    
T  10542745 cagccacttcaacgtgttatccttactgcatgagctgcaagttcccatctccttgctaattatttatcgcgatagtcaaagcacttttagtttgagtcat 10542646  T
Q  247 aatcacattcggcattctagaaccaagcacat 278  Q
    ||||  |||||||||||||||||||| |||||    
T  10542645 aatctgattcggcattctagaaccaaacacat 10542614  T

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Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 164 - 336
Target Start/End: Complemental strand, 10505370 - 10505198
Alignment:
Q  164 tatccttacttcatgaactgcaagttctcatctccacgtcaatcatttattgcattagtagaagcactttcgcttagagtcgtaatcacattcggcattc 263  Q
    |||||||||||||||| ||||| |||| ||||||| || |||||||||||| |||||||  ||||||  | |||| ||||| |||||| |||||||||||    
T  10505370 tatccttacttcatgagctgcaggttcccatctcctcgccaatcatttattacattagtcaaagcacacttgctttgagtcataatcagattcggcattc 10505271  T
Q  264 tagaaccaagcacatggaccttgatttgttgtttattcgagaaaaagatcttgccaaatctctagttgtgact 336  Q
    ||||||||  |||||||||||||||||||||||| || ||||||||| ||||||||||||  |||||| ||||    
T  10505270 tagaaccacacacatggaccttgatttgttgtttgtttgagaaaaagctcttgccaaatcaatagttgggact 10505198  T

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Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 203 - 326
Target Start/End: Complemental strand, 10486804 - 10486682
Alignment:
Q  203 caatcatttattgcattagtagaagcactttcgcttagagtcgtaatcacattcggcattctagaaccaagcacatggaccttgatttgttgtttattcg 302  Q
    ||||||||||| ||||||||  |||||||||| ||  |||||||| ||| ||| |||||||||||||||| |||||||||||||| ||||||| | || |    
T  10486804 caatcatttatagcattagtcaaagcactttcact--gagtcgtattcagatttggcattctagaaccaaacacatggaccttgaattgttgtgtttttg 10486707  T
Q  303 agaaaaaga-tcttgccaaatctct 326  Q
    ||||||| | |||||||||||||||    
T  10486706 agaaaaaaactcttgccaaatctct 10486682  T

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Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 93 - 216
Target Start/End: Original strand, 9082736 - 9082859
Alignment:
Q  93 gtctacttccggggcattcttatgtctttgtcctaacttggttgttcatagccctagctacttc-aaggtgttatccttacttcatgaactgcaagttct 191  Q
    |||| ||| ||||||||||||||||||| |||||||| |  |  |||| |||| |||||||||| |||||| |||||||||||||||| |||||| |||     
T  9082736 gtctcctttcggggcattcttatgtcttggtcctaacata-tcattcaaagccttagctacttctaaggtggtatccttacttcatgagctgcaatttcc 9082834  T
Q  192 catctccacgtcaatcatttattgc 216  Q
    |||||||||  ||||||||||||||    
T  9082835 catctccacaccaatcatttattgc 9082859  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 226 - 329
Target Start/End: Original strand, 7483396 - 7483500
Alignment:
Q  226 agcactttcgcttagagtcgtaatcacattcggcattctagaaccaagcacatggaccttgatttgttgtttattcgagaaaaaga-tcttgccaaatct 324  Q
    ||||| ||||||| ||||| |||||| ||| | |||||||||||||| | |||||| ||||||||||||| | || |||||||| | | |||||||||||    
T  7483396 agcaccttcgctttgagtcataatcagatttgacattctagaaccaaacccatggagcttgatttgttgtgtttttgagaaaaaaacttttgccaaatct 7483495  T
Q  325 ctagt 329  Q
    |||||    
T  7483496 ctagt 7483500  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 97 - 166
Target Start/End: Complemental strand, 10847104 - 10847034
Alignment:
Q  97 acttccggggcattcttatgtctttgtcctaacttggttgttcatagccctagctac-ttcaaggtgttat 166  Q
    |||||| ||||||||||||||||| ||||| ||||||| ||||||| |||||||||| || ||||||||||    
T  10847104 acttccagggcattcttatgtcttggtccttacttggtggttcataaccctagctacgtttaaggtgttat 10847034  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 217
Target Start/End: Original strand, 9077412 - 9077582
Alignment:
Q  47 aggcatattgtgatgttaattcagcctctaatgtagataacgtgaagtctacttccggggcattcttatgtctttgtcctaacttggttgttcatagccc 146  Q
    |||| |||||||||||| |||   ||||| ||||||||||| ||| |||| ||| | ||||||| ||||| ||| ||||||||||  |  |||||||||     
T  9077412 aggcctattgtgatgttgatttgacctctgatgtagataacatgaggtctgctttcagggcattgttatgccttggtcctaactt-atgattcatagcct 9077510  T
Q  147 tagctac-ttcaaggtgttatccttacttcatgaactgcaagttctcatctccacgtcaatcatttattgca 217  Q
    ||||||| || ||||||||| ||||| ||||||| | ||  |||| |||||||||  ||||  |||||||||    
T  9077511 tagctacttttaaggtgttaaccttatttcatgagcagcgcgttcccatctccacaccaatactttattgca 9077582  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 10491230 - 10491161
Alignment:
Q  260 attctagaaccaagcacatggaccttgatttgttgtttattcgagaaaaaga---tcttgccaaatctct 326  Q
    ||||||||||||| |||||||||||||||||||||| | || |||||||| |   |||||||||||||||    
T  10491230 attctagaaccaaacacatggaccttgatttgttgtgtttttgagaaaaaaaaactcttgccaaatctct 10491161  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 10858629 - 10858526
Alignment:
Q  72 ctctaatgtagataacgtgaagtctacttccggggcattcttatgtctttgtcctaacttggttgttcatagccctagctacttc-aaggtgttatcctt 170  Q
    |||| ||||||||||  ||| |||||  | ||||||| ||||||||||| || |||||||||| |||||||||||||| ||| || |||| ||||||| |    
T  10858629 ctctgatgtagataatctgaggtctaactgcggggcactcttatgtcttagttctaacttggtggttcatagccctagttacctctaaggcgttatccat 10858530  T
Q  171 actt 174  Q
    ||||    
T  10858529 actt 10858526  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 336
Target Start/End: Complemental strand, 10858470 - 10858371
Alignment:
Q  240 gagtcgtaatcacattcggcattctagaaccaagcac---atggaccttgatttgttgtttattcgagaaaaagatcttgccaaatctctagttgtgact 336  Q
    ||||| |||||  |||||||||||||||||||| ||    ||||||||||||||||| ||| ||||| ||||   ||||| |||||||||||| ||||||    
T  10858470 gagtcctaatctgattcggcattctagaaccaaacaacatatggaccttgatttgttctttgttcgataaaattttcttggcaaatctctagtcgtgact 10858371  T

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Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 68 - 197
Target Start/End: Complemental strand, 17733986 - 17733856
Alignment:
Q  68 cagcctctaatgtagataacgtgaagtctacttccggggcattcttatgtctttgtcctaacttggttgttcatagccctagctacttc-aaggtgttat 166  Q
    |||||||| || |||||| |  || ||||||||||| |||||||||||||||| |||||||||||||  ||||||||||||| |||||| ||||||||||    
T  17733986 cagcctctgatatagatatcacgaggtctacttccgaggcattcttatgtcttggtcctaacttggtgattcatagccctagatacttctaaggtgttat 17733887  T
Q  167 ccttacttcatgaactgcaagttctcatctc 197  Q
    |||| |||||||| |||||||||| ||||||    
T  17733886 ccttgcttcatgagctgcaagttcccatctc 17733856  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 197
Target Start/End: Complemental strand, 18489464 - 18489334
Alignment:
Q  68 cagcctctaatgtagataacgtgaagtctacttccggggcattcttatgtctttgtcctaacttggttgttcatagccctagctacttc-aaggtgttat 166  Q
    |||||||| || |||||| |  || ||||||||||| |||||||||||||||| |||||||||||||  ||||||||||||| |||||| ||||||||||    
T  18489464 cagcctctgatatagatatcacgaggtctacttccgaggcattcttatgtcttggtcctaacttggtgattcatagccctagatacttctaaggtgttat 18489365  T
Q  167 ccttacttcatgaactgcaagttctcatctc 197  Q
    |||| |||| ||| |||||||||| ||||||    
T  18489364 ccttgcttcttgagctgcaagttcccatctc 18489334  T

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Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 47 - 250
Target Start/End: Original strand, 33579733 - 33579937
Alignment:
Q  47 aggcatattgtgatgttaattcagcctctaatgtagataacgtgaagtctacttccggggcattcttatgtctttgtcctaacttggttgttcatagccc 146  Q
    |||| |||||||||||| |||   | ||| |||| || |||||||  ||||  |||||| |||||||||||| |  ||||||||||||  ||||||||||    
T  33579733 aggcctattgtgatgttgattagacgtctgatgtggaaaacgtgagatctaaatccgggtcattcttatgtcatgatcctaacttggtgcttcatagccc 33579832  T
Q  147 tagctacttcaa-ggtgttatccttacttcatgaactgcaagttctcatctccacgtcaatcatttattgcattagtagaagcactttcgcttagagtcg 245  Q
    |||||||||| | ||||||  |||||||||||||||||| |||||||||| |||||  ||| || ||||||||  ||  |||||||||||||| |||||     
T  33579833 tagctacttctacggtgttggccttacttcatgaactgcgagttctcatcgccacgctaatgatctattgcatccgtcaaagcactttcgcttcgagtca 33579932  T
Q  246 taatc 250  Q
    |||||    
T  33579933 taatc 33579937  T

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