View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18315_high_45 (Length: 351)
Name: NF18315_high_45
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_high_45 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 41141472 - 41141812
Alignment:
| Q |
1 |
tcgcagtaataactcataaacaaactttgtcattgatgtatgggtggattgaaaattgaaatactgaagaaaaaacgtttcaaatttgagctaataataa |
100 |
Q |
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| T |
41141472 |
tcgcagtaataactcataaacaaactttgtcattgatgtatgggtgaattgaaaattgaaatactgaagaaaaaacgtttcaaatttgagctaataataa |
41141571 |
T |
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| Q |
101 |
cgggaaggttgtaaaaggttttgggtaacatt----caaccggttagattggtataatacaaaattaaacaagtgtaccaattctaatggttacaacata |
196 |
Q |
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| T |
41141572 |
cgggaaggttgtaaaaggttttgggtaacattcattcaaccggttagattggtataatacaaaattaaaaaagtgtaccaattctaatggttacaacata |
41141671 |
T |
|
| Q |
197 |
tgatgtataaatgtattgacacaatttaaagatagatacgccatgaatatttctatataattcacttgtaaaaggaagcaaaagcaaaaaactacagcat |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41141672 |
tgatgtataaatgtattgacacaatttaaagatagatacgccatgaatatttctatataattcacttgtaaaaggaagcaaaagcaaaaaactacagcat |
41141771 |
T |
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| Q |
297 |
gacttgtaaaagataatttggcaaagcttggccaaatattt |
337 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
41141772 |
gacttgtaaaagataatttggcaaagcttggccaaatattt |
41141812 |
T |
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