View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18315_high_47 (Length: 343)

Name: NF18315_high_47
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18315_high_47
NF18315_high_47
[»] chr5 (3 HSPs)
chr5 (38-328)||(18578181-18578471)
chr5 (223-328)||(30495992-30496095)
chr5 (223-328)||(30536335-30536438)
[»] chr4 (1 HSPs)
chr4 (38-328)||(10340217-10340507)
[»] chr6 (1 HSPs)
chr6 (38-109)||(29171554-29171625)


Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 38 - 328
Target Start/End: Original strand, 18578181 - 18578471
Alignment:
Q  38 tttacaacatttgcaaattttatatttcatgataatgagcttttgcaactgcccataaacatttgatgcttaaaaacattttacgcttaagagttcagtg 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||    
T  18578181 tttacaacatttgcaaattttatatttcatgataatgagcttttgcaactgtccataaacatttgacgcttaaaaacattttacgcttaagagttcattg 18578280  T
Q  138 caataagaaataaaaaatggatcaaaagtttaaaattgaaccaactcatgtttatcattcttatgaacttattgacaatgttaaagtgtgacctcttcat 237  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  18578281 caataagaaataaaaaatggatcaaaagtttaaaattgaaacaactcatgtttatcattcttatgaactgattgacaatgttgaagtgtgacctcttcat 18578380  T
Q  238 ccttatgaattatattcattctttctacacttcattattacttacttttggccatgctttctttctgtatttgtttttcaggggaagaaag 328  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18578381 ccttatgaatcatattcattctttctacacttcattattacttacttttggccatgctttctttctgtatttgtttttcaggcgaagaaag 18578471  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 223 - 328
Target Start/End: Complemental strand, 30496095 - 30495992
Alignment:
Q  223 gtgtgacctcttcatccttatgaattatattcattctttctacacttcattattacttacttttggccatgctttctttctgtatttgtttttcagggga 322  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||  |||| || | ||||||||||| ||||||||||||||||    
T  30496095 gtgtgacctcttcatcgttatgaattatattcattctttctacacttcattactgcttac--ttggtcaagatttctttctgtctttgtttttcagggga 30495998  T
Q  323 agaaag 328  Q
    ||||||    
T  30495997 agaaag 30495992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 223 - 328
Target Start/End: Complemental strand, 30536438 - 30536335
Alignment:
Q  223 gtgtgacctcttcatccttatgaattatattcattctttctacacttcattattacttacttttggccatgctttctttctgtatttgtttttcagggga 322  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||  |||| || | ||||||||||| ||||||||||||||||    
T  30536438 gtgtgacctcttcatcgttatgaattatattcattctttctacacttcattactgcttac--ttggtcaagatttctttctgtctttgtttttcagggga 30536341  T
Q  323 agaaag 328  Q
    ||||||    
T  30536340 agaaag 30536335  T

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Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 38 - 328
Target Start/End: Original strand, 10340217 - 10340507
Alignment:
Q  38 tttacaacatttgcaaattttatatttcatgataatgagcttttgcaactgcccataaacatttgatgcttaaaaacattttacgcttaagagttcagtg 137  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||    
T  10340217 tttacagcatttgcaaattttatatttcatgataatgagcttttgcaactgtccataaacatttgacgcttaaaaacattttacgcttaagagttcattg 10340316  T
Q  138 caataagaaataaaaaatggatcaaaagtttaaaattgaaccaactcatgtttatcattcttatgaacttattgacaatgttaaagtgtgacctcttcat 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  10340317 caataagaaataaaaaatggatcaaaagtttaaaattgaaccaactcatgtttatcattcttatgaactgattgacaatgttgaagtgtgacctcttcat 10340416  T
Q  238 ccttatgaattatattcattctttctacacttcattattacttacttttggccatgctttctttctgtatttgtttttcaggggaagaaag 328  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  10340417 ccttatgaattatagtcattctttctacacttcattattacttacttttggccatgctttctttctgaatttgtttttcagaggaagaaag 10340507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 29171554 - 29171625
Alignment:
Q  38 tttacaacatttgcaaattttatatttcatgataatgagcttttgcaactgcccataaacatttgatgctta 109  Q
    ||||| ||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||| |||||    
T  29171554 tttacgacatttgcaaaatttatatttcatgatagtgagcttttgcaactgtccataaacatttgacgctta 29171625  T

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