View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18315_high_50 (Length: 338)
Name: NF18315_high_50
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_high_50 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 327
Target Start/End: Complemental strand, 38621201 - 38620891
Alignment:
| Q |
17 |
agcattttaactatctcaatcttttcaaaatggatcgtctactgttagctatacagtgcagccaactacaaactgttagatgaagaaagaaagaagaaaa |
116 |
Q |
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| T |
38621201 |
agcattttaactatcgcaatcttttcaaaatggatcgtctactgttagctatacagtgcagccaactacaaactgttagatgaagaaagaaagaagaaaa |
38621102 |
T |
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| Q |
117 |
tctaataatctatagctgtctgcattgtaaggttgactatagaggatcgaggtttggatcttttttagactcaaaattaaaatatcaggtttccaatgtc |
216 |
Q |
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| T |
38621101 |
tctaataatctatagctgtctgcattgtaagattgactatagaggatcgaggtttggatcttttttagactcaaaattaaaatatcaggtttccaatgtc |
38621002 |
T |
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| Q |
217 |
gatgtaatctttaggtaaaattaatccgttttatttggtccaactctcctgagttttgatctttactctgcgaataacttatttgcatttatcttaaagt |
316 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38621001 |
gatgtaatctttaggtaaaattaatcagttttatttggtccaactctcctgagctttgatctttactctgcgaataacttatttgcatttatcttaaagt |
38620902 |
T |
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| Q |
317 |
ttctgtctgtg |
327 |
Q |
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|||||| |||| |
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| T |
38620901 |
ttctgtttgtg |
38620891 |
T |
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