View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18315_high_52 (Length: 337)

Name: NF18315_high_52
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18315_high_52
NF18315_high_52
[»] chr6 (5 HSPs)
chr6 (19-313)||(30934959-30935253)
chr6 (20-206)||(30993896-30994081)
chr6 (37-89)||(25048610-25048662)
chr6 (69-206)||(30965201-30965336)
chr6 (21-80)||(33927021-33927081)
[»] chr3 (1 HSPs)
chr3 (19-96)||(41147661-41147738)
[»] chr1 (2 HSPs)
chr1 (37-74)||(33485851-33485888)
chr1 (65-109)||(40006930-40006974)


Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 313
Target Start/End: Original strand, 30934959 - 30935253
Alignment:
Q  19 ccaagctacaacaattggctaaatatttcaaacatacacatgattccaatcaaatacttcaacattttcaactcattatccaaagattcaatctaaaggg 118  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||| || ||||||||||| | || ||    
T  30934959 ccaagctacaacaattggttaaagatttcaaacatacacatgattccaatcaaatacttccacattttcaattcattctcaaaagattcaatgtgaacgg 30935058  T
Q  119 gattagaaacccacgtacactgtcatgtcattattcaacatcacacatcaccatagataacgtttgaagttaacggatagatgaaactgaataacgcaaa 218  Q
    |||| ||||||||||||||||||||||||||  || |||||| |||||||||||| |||||||||||||||||||||||||||||||  |||||||||||    
T  30935059 gatttgaaacccacgtacactgtcatgtcatcgtttaacatcgcacatcaccataaataacgtttgaagttaacggatagatgaaaccaaataacgcaaa 30935158  T
Q  219 ataaacccaacgtctattgtgatctttcaaaaaattcaaagactaaatagaacgatagttacaaattcagagattatctcgtctgttcattcatt 313  Q
    |||||||||| ||||| ||||||||| | ||||||||||||||||||| |||||||| ||||||||||||||| ||||| |||| ||||||||||    
T  30935159 ataaacccaaagtctactgtgatcttacgaaaaattcaaagactaaattgaacgatatttacaaattcagagactatcttgtctattcattcatt 30935253  T

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Target: chr6; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 30993896 - 30994081
Alignment:
Q  20 caagctacaacaattggctaaatatttcaaacatacacatgattccaatcaaatacttcaacattttcaactcatta-tccaaagattcaatctaaaggg 118  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||| | ||| || || ||||||||||| ||||||     
T  30993896 caagctacaacaattggctaatgatttcaaacatacacatgattccaatcaaatacctcaacattttcta-tcaatactctaaagattcaatataaaggt 30993994  T
Q  119 gattagaaacccacgtacactgtcatgtcattattcaacatcacacatcaccatagataacgtttgaagttaacggatagatgaaact 206  Q
    ||||  ||||||||||  |||| ||| | |||||| |||||  ||| ||| |||||||||||||||||||||||||| ||||||||||    
T  30993995 gatttaaaacccacgtcgactgccatatgattatt-aacatttcacgtcatcatagataacgtttgaagttaacggagagatgaaact 30994081  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 25048610 - 25048662
Alignment:
Q  37 ctaaatatttcaaacatacacatgattccaatcaaatacttcaacattttcaa 89  Q
    ||||| ||||||||||||||||| ||| |||| ||||||||||||||||||||    
T  25048610 ctaaaaatttcaaacatacacataatttcaatgaaatacttcaacattttcaa 25048662  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 206
Target Start/End: Original strand, 30965201 - 30965336
Alignment:
Q  69 caaatacttcaacattttcaactcattatccaaagattcaatctaaaggggattagaaacccacgtacactgtcatgtcattattcaacatcacacatca 168  Q
    ||||||| ||||||||||| | ||||  || |||| |||||| |||||| ||||  ||||||||||  ||| |||||| | |||| |||||  ||| |||    
T  30965201 caaatacctcaacattttctattcatc-tctaaaggttcaatgtaaaggtgatttaaaacccacgtcgactatcatgtgaatatt-aacattgcacgtca 30965298  T
Q  169 ccatagataacgtttgaagttaacggatagatgaaact 206  Q
     ||||||||||| ||||||||| |||| ||||||||||    
T  30965299 tcatagataacgcttgaagttatcggagagatgaaact 30965336  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 33927021 - 33927081
Alignment:
Q  21 aagctacaacaattggctaaatatttcaaac-atacacatgattccaatcaaatacttcaa 80  Q
    |||| |||||||||||||||| || | | ||  ||||||||||||||||||||||||||||    
T  33927021 aagccacaacaattggctaaagatctaatacgttacacatgattccaatcaaatacttcaa 33927081  T

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Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 41147661 - 41147738
Alignment:
Q  19 ccaagctacaacaattggctaaatatttcaaacatacacatgattccaatcaaatacttcaacattttcaactcatta 96  Q
    ||||||||||||||||||  ||| ||||||||||||||||| |||||||||||| |||||||||||||||| ||||||    
T  41147661 ccaagctacaacaattggtaaaagatttcaaacatacacataattccaatcaaacacttcaacattttcaattcatta 41147738  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 33485888 - 33485851
Alignment:
Q  37 ctaaatatttcaaacatacacatgattccaatcaaata 74  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  33485888 ctaaagatttcaaacatacacataattccaatcaaata 33485851  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 40006974 - 40006930
Alignment:
Q  65 caatcaaatacttcaacattttcaactcattatccaaagattcaa 109  Q
    ||||||||||| ||||||||||||| |||||||| ||| ||||||    
T  40006974 caatcaaatacctcaacattttcaattcattatctaaaaattcaa 40006930  T

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