View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18315_high_55 (Length: 317)
Name: NF18315_high_55
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_high_55 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 39491316 - 39491031
Alignment:
| Q |
19 |
aggtgtcacgaaaggagaggttgtaagtagattctaattttgacgtggctcttatttcttctaattaacgatcgatgcaacgaattttatgttttcttgc |
118 |
Q |
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| T |
39491316 |
aggtgtcacgaaaggagaggttgtaagtagattctaattttgacgtggctcttatttcttctaattaacgatcgatgcaacgaattttatgttttcttgt |
39491217 |
T |
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| Q |
119 |
gcaattctttctcatttccttggcctatatatgtaaccccaccaccttgtttctaagacactgcaacctattacaacaaaatagcttctgtctgctggaa |
218 |
Q |
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| T |
39491216 |
gca-ttctttctcatttccttggcctatatatgtaaacccaccaccttgtttctaagacactgcaacctattacaacaaaatagcttctgtctgctggaa |
39491118 |
T |
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| Q |
219 |
gctaaaaacaccatcctctcacaaatttttactattttgaatcatcaatggctcgcaacttcaacaacgttaaagctatctctgctc |
305 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39491117 |
gctcaaaacaccatcctctcacaaatttttactattttgaatcatcaatggctcgcaacttcaacaacgttaaagctatctctgctc |
39491031 |
T |
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