View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18315_high_56 (Length: 317)
Name: NF18315_high_56
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_high_56 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 305
Target Start/End: Complemental strand, 26828916 - 26828628
Alignment:
| Q |
17 |
agaatcctcccggccagctgctttagtatcagcagtgcgcaggccattattagaggcagttgccacactcaactgtttactgctgtttgcggttttccac |
116 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26828916 |
agaatcctcccggccagctgttttagtatcagcagtgcgcaggccattattagaggcagttgccacactcaactgtttactgctgtttgcggttttccac |
26828817 |
T |
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| Q |
117 |
ccctgcagcaagtgcctcgcgtgctctggaatagtttgacagttttcagttacattttgtattttatttggttctttattgttctattggaaaaataaga |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||| |
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| T |
26828816 |
ccctgcagcaagtgcctcgcgtgctctggaatagtttgacagttttcagttacattttgtattttctttgattctttattggtctattggaaaaataaga |
26828717 |
T |
|
| Q |
217 |
aacatttcattgtgtcacaatcttctccgaggatgagtatatggttattgcagattcctcatccatcacttgtcattgtataagatgat |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26828716 |
aacatttcattgtgtcacaatcttctccgaggatgagtatatggttattgcagattcctcatccatcacttgtcattgtataatatgat |
26828628 |
T |
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