View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18315_high_60 (Length: 302)
Name: NF18315_high_60
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_high_60 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 285
Target Start/End: Original strand, 25481906 - 25482189
Alignment:
| Q |
12 |
gaacaaggcatgactcaaacttaccttcatgtagctgcttcacatgatgatgcaggttgtgaaacaggtttgtcgtca----------aagtatgcttct |
101 |
Q |
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| T |
25481906 |
gaacaaggcatgactcaaacttaccttcaggtagctgcttcacatgatgatgcaggttgtgaaacaggtttgtcgtcaaagtatgtcaaagtatgcttct |
25482005 |
T |
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| Q |
102 |
cggcaatgttggttgtattactttcctcttctttcttcttcgagccttttgttcattgttttgataaaaataagaacccaaacggtgaggatattttaat |
201 |
Q |
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| T |
25482006 |
cggcaatgttggttgtattactttcctcttctttcttcttagagccttttgttcattgttttgataaaaataagaacccaaacggtgaggatattttaat |
25482105 |
T |
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| Q |
202 |
atgtttttgatcaaaaaggaataagacaagactcaaacttactttccacttcctgctgataagcaagaacgggaggcttctcag |
285 |
Q |
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| T |
25482106 |
atgtttttgatcaaaaaggaataagacaagactcaaacttactttccacttcctgctgataagcaagaacgggaggcttctcag |
25482189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 285
Target Start/End: Complemental strand, 25862129 - 25861846
Alignment:
| Q |
12 |
gaacaaggcatgactcaaacttaccttcatgtagctgcttcacatgatgatgcaggttgtgaaacaggtttgtcgtcaaagtatg----------cttct |
101 |
Q |
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| T |
25862129 |
gaacaaggcatgactcaaacttaccttcaggtagctgcttcacatgatgatgcaggttgtgaaacaggtttgtcgtcaaagtatgtcaaagtatgcttct |
25862030 |
T |
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| Q |
102 |
cggcaatgttggttgtattactttcctcttctttcttcttcgagccttttgttcattgttttgataaaaataagaacccaaacggtgaggatattttaat |
201 |
Q |
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| T |
25862029 |
cggcaatgttggttgtattactttcctcttctttcttcttagagccttttgttcattgttttgataaaaataagaacccaaacggtgaggatattttaat |
25861930 |
T |
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| Q |
202 |
atgtttttgatcaaaaaggaataagacaagactcaaacttactttccacttcctgctgataagcaagaacgggaggcttctcag |
285 |
Q |
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| T |
25861929 |
atgtttttgatcaaaaaggaataagacaagactcaaacttactttccacttcctgctgataagcaagaacgggaggcttctcag |
25861846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 12 - 285
Target Start/End: Complemental strand, 25887867 - 25887584
Alignment:
| Q |
12 |
gaacaaggcatgactcaaacttaccttcatgtagctgcttcacatgatgatgcaggttgtgaaacaggtttgtcgtcaaagta----------tgcttct |
101 |
Q |
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| T |
25887867 |
gaacaaggcatgactcaaacttaccttcatgtagctgtatcacttgaagatgcaggttgtgaaacaggtttgtcgtcaaagtacgtcaaagtatgcttct |
25887768 |
T |
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| Q |
102 |
cggcaatgttggttgtattactttcctcttctttcttcttcgagccttttgttcattgttttgataaaaataagaacccaaacggtgaggatattttaat |
201 |
Q |
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| T |
25887767 |
cggcaatgttggttgtattactttcctcttctttcttcttcgagccttttgttcattgttttgataaaaataagaacccaaatggtgaggatattttaat |
25887668 |
T |
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| Q |
202 |
atgtttttgatcaaaaaggaataagacaagactcaaacttactttccacttcctgctgataagcaagaacgggaggcttctcag |
285 |
Q |
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| T |
25887667 |
atgtttttgatcaaaaaggaataagacaagactcaaacttactttccacttcttgctgatatgcaagaacgggaggcttctcag |
25887584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 25605699 - 25605422
Alignment:
| Q |
18 |
ggcatgactcaaacttaccttcatgtagctgcttcacatgatgatgcaggttgtgaaacaggtttgtcgtcaaagtatg----------cttctcggcaa |
107 |
Q |
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| T |
25605699 |
ggcatgactcaaacttaccttcatgtagctgtatcacttgaagatgcaggttgtgaaacaggtttgtcgtcaaagtatgtcaaagtatgcttctcggcga |
25605600 |
T |
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| Q |
108 |
tgttggttgtattactttcctcttctttcttcttcgagccttttgttcattgttttgataaaaataagaacccaaacggtgaggatattttaatatgttt |
207 |
Q |
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| T |
25605599 |
tgttggttgtattactttcctcttctttcttcttagagccttttgttcattgttttgataaaaataagaacccaaacggtgaggatattttaatatgttt |
25605500 |
T |
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| Q |
208 |
ttgatcaaaaaggaataagacaagactcaaacttactttccacttcctgctgataagcaagaacgggaggcttctcag |
285 |
Q |
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| T |
25605499 |
ttgatcaaaaaggaataagacaagactcaaacttactttccacttcctgctgataagcaagaacgggaggcttctcag |
25605422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 25887901 - 25887844
Alignment:
| Q |
185 |
ggtgaggatattttaatatgtttttgatcaaaaaggaataagacaagactcaaacttac |
243 |
Q |
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| T |
25887901 |
ggtgaggatattttaatatg-ttttgatcaaaaaagaacaaggcatgactcaaacttac |
25887844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 204
Target Start/End: Complemental strand, 50668359 - 50668303
Alignment:
| Q |
147 |
cttttgttcattgttttgataaaaataagaacccaaacggtgaggatattttaatatg |
204 |
Q |
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| T |
50668359 |
cttttgttcattgttttgat-caaataagaaaccaaagggtgaggatgtttcaatatg |
50668303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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