View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18315_high_65 (Length: 296)
Name: NF18315_high_65
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_high_65 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 11800584 - 11800428
Alignment:
| Q |
13 |
gaacatttacagttggagcatatatagctaagggaacaaaacactcttaaaacatagaacatgcttcaagaggtaaagtgggggataatcggttgttcat |
112 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11800584 |
gaacatttatagttgaagcatatatagctaagggaacaaaacactcttaaaacacagaacatgcttcaagaggtaaagtgggggataatcggttgttcat |
11800485 |
T |
|
| Q |
113 |
ctaacaaacttagtagctgaattatcctcctaatgacgaagttaacaataaaatata |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11800484 |
ctaacaaacttagtagctgaattatcctcctaatgacgaagttaacaataaaatata |
11800428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 171 - 280
Target Start/End: Complemental strand, 11800298 - 11800189
Alignment:
| Q |
171 |
tccaggttatatcatcccgaaaggatggaaagtgctaacatggtcaagagctattcatcatgatcctacatattattcaaacccagatgaatttaatcca |
270 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11800298 |
tccaggttatatcatcccgaatggatggaaagtgctaacatggtcaagagctattcatcatgaacctacatattattcaaacccagatgaatttaatcca |
11800199 |
T |
|
| Q |
271 |
tcgagatggg |
280 |
Q |
| |
|
|||||||||| |
|
|
| T |
11800198 |
tcgagatggg |
11800189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 279
Target Start/End: Complemental strand, 11816153 - 11816045
Alignment:
| Q |
173 |
caggttatatcatcccgaaaggatggaaagtgctaacatggtcaagagctattcat-cat-gatcctacatattattcaaacccagatgaatttaatcca |
270 |
Q |
| |
|
|||| ||||| || || ||||||||||||||| |||| |||||||||||||||||| || ||||||||| ||||| | ||||| || ||||||||||| |
|
|
| T |
11816153 |
caggctatataataccaaaaggatggaaagtgttaacttggtcaagagctattcatatatggatcctacaaattatcccaacccggagaaatttaatcca |
11816054 |
T |
|
| Q |
271 |
tcgagatgg |
279 |
Q |
| |
|
||||||||| |
|
|
| T |
11816053 |
tcgagatgg |
11816045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University