View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18315_high_70 (Length: 277)
Name: NF18315_high_70
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_high_70 |
 | |
|
| [»] scaffold0011 (1 HSPs) |
| | |
|
| [»] scaffold0662 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0011 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 36 - 237
Target Start/End: Original strand, 242487 - 242688
Alignment:
| Q |
36 |
gtcgtttccttggttcgttatggagtatcctttgttgagggataaagcaagtttgagttttgatttttgggttttcggaagcaattcgttgtgtgctttt |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
242487 |
gtcgtttccttggttcgttatggagtatcctttgttgagggataaagcaagtttgagttttgatttttgggttttcggaagtaattcgttgtgtgctttt |
242586 |
T |
|
| Q |
136 |
gctttgaaccttgctgtgtttttgcttgttgggaagacttcggctttgacgatgaatgttgctggtgttgtgaaggattggttgcttattgcattttctt |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
242587 |
gctttgaaccttgctgtgtttttgcttgttgggaagacttcggctttgacgatgaatgttgctggtgttgtgaaggattggttgcttattgcattttctt |
242686 |
T |
|
| Q |
236 |
gg |
237 |
Q |
| |
|
|| |
|
|
| T |
242687 |
gg |
242688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0662 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0662
Description:
Target: scaffold0662; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 118 - 230
Target Start/End: Complemental strand, 152 - 40
Alignment:
| Q |
118 |
aattcgttgtgtgcttttgctttgaaccttgctgtgtttttgcttgttgggaagacttcggctttgacgatgaatgttgctggtgttgtgaaggattggt |
217 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||| | ||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
152 |
aattcgctgtgtgcttttgctttgaatcttgctgtgtttttgttggttgggaagacgtcggctttgactatgaatgttgctggggttgttaaggattggt |
53 |
T |
|
| Q |
218 |
tgcttattgcatt |
230 |
Q |
| |
|
|| | |||||||| |
|
|
| T |
52 |
tgttgattgcatt |
40 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 118 - 230
Target Start/End: Complemental strand, 47014013 - 47013901
Alignment:
| Q |
118 |
aattcgttgtgtgcttttgctttgaaccttgctgtgtttttgcttgttgggaagacttcggctttgacgatgaatgttgctggtgttgtgaaggattggt |
217 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||| | ||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
47014013 |
aattcgctgtgtgcttttgctttgaatcttgctgtgtttttgttggttgggaagacgtcggctttgactatgaatgttgctggggttgttaaggattggt |
47013914 |
T |
|
| Q |
218 |
tgcttattgcatt |
230 |
Q |
| |
|
|| | |||||||| |
|
|
| T |
47013913 |
tgttgattgcatt |
47013901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 118 - 216
Target Start/End: Original strand, 49575274 - 49575372
Alignment:
| Q |
118 |
aattcgttgtgtgcttttgctttgaaccttgctgtgtttttgcttgttgggaagacttcggctttgacgatgaatgttgctggtgttgtgaaggattgg |
216 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||| ||| | ||||||||||| || || |||||||| |||||||||||||||||||| || |||||| |
|
|
| T |
49575274 |
aattctttgtgtgcatttgctttgaatcttgctgtttttcttcttgttgggaaaacatctgctttgacaatgaatgttgctggtgttgttaaagattgg |
49575372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University