View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18315_high_71 (Length: 269)
Name: NF18315_high_71
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_high_71 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 3825429 - 3825696
Alignment:
| Q |
1 |
tgatgacttttagctattggtcccatataaaattgatgtgattttaattaaagacgggtcagatttattccaaaataacattccgtagcctatagatgca |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3825429 |
tgatgacttttagctattggtcccatatgaaattgatgtgattttaattaaagacggatcagatttattccaaaataacattccgtagcctatagatgca |
3825528 |
T |
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| Q |
101 |
attttggtatcacatcttatgtcctaattttggtataatggctcccggccaagggcacaccacctagtctatccatttggataaagtttacatattaatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3825529 |
attttggtatcacatcttatgtcctaattttggtataatggct-ccggccaagggcacaccacctagtctatccatttggataaagtttacatattaatg |
3825627 |
T |
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| Q |
201 |
gaacnnnnnnngacatatgttaatttataatggaattaaacttttttgacaagccatgttactgataat |
269 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3825628 |
gaacaaaaaaagacatatgttaatttataatggaattaaacttttttgacaagccatgttactgataat |
3825696 |
T |
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