View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18315_high_74 (Length: 237)
Name: NF18315_high_74
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_high_74 |
 | |
|
| [»] chr2 (9 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 40 - 237
Target Start/End: Complemental strand, 31280742 - 31280545
Alignment:
| Q |
40 |
tatttccaaattcactcacatgatctgctcaacccagcctcatactccctttatataaattgtggtggaaggcaagcgacaatcaacaaaagaacttacg |
139 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||| |||||||||| | |
|
|
| T |
31280742 |
tattttcaaattcacttacatgatctgctcaacccagcctcatactccctttatataaattgtggtggaaagcaagaaacagtcaacgaaagaacttatg |
31280643 |
T |
|
| Q |
140 |
atgatgattcagattcatctggaccaactaaattccatctcagtccaacaggaaattgggcatttagcaccactgggatattcattgatcatggtcaa |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
31280642 |
atgatgattcagattcatctggaccaactaaattccatcacagtccaacaggaaattgggcatttattaccactggtatattcattgatcatggtcaa |
31280545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 40 - 223
Target Start/End: Complemental strand, 31373678 - 31373495
Alignment:
| Q |
40 |
tatttccaaattcactcacatgatctgctcaacccagcctcatactccctttatataaattgtggtggaaggcaagcgacaatcaacaaaagaacttacg |
139 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||| || ||||||||| || ||| | |
|
|
| T |
31373678 |
tatttccaaattcactcacatgatttgctcaacccagccgcatactccctttatataaattgtggtggaaagcaagaaactgtcaacaaaacaagttatg |
31373579 |
T |
|
| Q |
140 |
atgatgattcagattcatctggaccaactaaattccatctcagtccaacaggaaattgggcatttagcaccactgggatattca |
223 |
Q |
| |
|
|||||||||| || |||||||||||| | |||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
31373578 |
atgatgattccgagtcatctggaccagcaaaattccatctcagcccaacaggaaattgggcatttagcactactggtatattca |
31373495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 24 - 228
Target Start/End: Complemental strand, 31384269 - 31384062
Alignment:
| Q |
24 |
attttcttagtttcctta---tttccaaattcactcacatgatctgctcaacccagcctcatactccctttatataaattgtggtggaaggcaagcgaca |
120 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||| |||||||||| || ||||||||| |||||||||||||||||| ||||| | | |
|
|
| T |
31384269 |
attttcttagtttccttaatatttccaaagtcactcacatgatcttatcaacccagcgtcttactcccttcatataaattgtggtggaaagcaagaaaga |
31384170 |
T |
|
| Q |
121 |
atcaacaaaagaacttacgatgatgattcagattcatctggaccaactaaattccatctcagtccaacaggaaattgggcatttagcaccactgggatat |
220 |
Q |
| |
|
||||||||| || ||| ||||||||||| ||||| |||||| || ||||||||||| ||||||||||||||| ||||||||||||||| ||||| |||| |
|
|
| T |
31384169 |
gtcaacaaaacaagttatgatgatgattccgattcttctggagcagctaaattccatgtcagtccaacaggaacttgggcatttagcactactggtatat |
31384070 |
T |
|
| Q |
221 |
tcattgat |
228 |
Q |
| |
|
|||||||| |
|
|
| T |
31384069 |
tcattgat |
31384062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 31253473 - 31253264
Alignment:
| Q |
22 |
tgattttcttagtttcctta---tttccaaattcactcacatgatctgctcaacccagcctcatactccctttatataaattgtggtggaaggcaagcga |
118 |
Q |
| |
|
|||||||||||||||||||| ||| ||| | |||||||| ||| ||||||||||||| |||||||||| ||||||||||||||||| |||||| | |
|
|
| T |
31253473 |
tgattttcttagtttccttaatatttttaaagttgctcacatgttcttctcaacccagccttgtactccctttttataaattgtggtggaaagcaagcaa |
31253374 |
T |
|
| Q |
119 |
caatcaacaaaagaacttacgatgatgattcagattcatctggaccaactaaattccatctcagtccaacaggaaattgggcatttagcaccactgggat |
218 |
Q |
| |
|
| ||||||||| || ||| |||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||| || ||||| || |
|
|
| T |
31253373 |
tagtcaacaaaaaaagttatgatgatgattcagattcatctggagcagctaaattccatgtcagtccaacaggaaattgggcatttagtacaactggtat |
31253274 |
T |
|
| Q |
219 |
attcattgat |
228 |
Q |
| |
|
|||||||||| |
|
|
| T |
31253273 |
attcattgat |
31253264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 31291033 - 31290824
Alignment:
| Q |
22 |
tgattttcttagtttcctta---tttccaaattcactcacatgatctgctcaacccagcctcatactccctttatataaattgtggtggaaggcaagcga |
118 |
Q |
| |
|
|||||||||||||||||||| |||||||| | |||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||| || | |
|
|
| T |
31291033 |
tgattttcttagtttccttaatatttccaaagtttctcacatgatcttctcaacccagccttgtactccctttatataaattgtggtggaaagcatgcaa |
31290934 |
T |
|
| Q |
119 |
caatcaacaaaagaacttacgatgatgattcagattcatctggaccaactaaattccatctcagtccaacaggaaattgggcatttagcaccactgggat |
218 |
Q |
| |
|
| |||| ||||||| ||| || |||||||| ||||| |||||| || ||||||||||| |||| |||||||||||||||||||||||| | || || || |
|
|
| T |
31290933 |
tagtcaaaaaaagaagttatgacgatgattccgattcttctggagcagctaaattccatgtcagcccaacaggaaattgggcatttagctctaccggtat |
31290834 |
T |
|
| Q |
219 |
attcattgat |
228 |
Q |
| |
|
|||||||||| |
|
|
| T |
31290833 |
attcattgat |
31290824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 54 - 228
Target Start/End: Complemental strand, 31358314 - 31358140
Alignment:
| Q |
54 |
ctcacatgatctgctcaacccagcctcatactccctttatataaattgtggtggaaggcaagcgacaatcaacaaaagaacttacgatgatgattcagat |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | | ||||||||| || ||| ||||||||||||||| |
|
|
| T |
31358314 |
ctcacatgatctgctcaacccagcctcatactccctttatataaattgtggtggaagtcgagcaaaagtcaacaaaacaagttatgatgatgattcagat |
31358215 |
T |
|
| Q |
154 |
tcatctggaccaactaaattccatctcagtccaacaggaaattgggcatttagcaccactgggatattcattgat |
228 |
Q |
| |
|
|| ||||||| ||| |||| ||| ||||||||| |||||||||||||| || |||||||| |||| ||||||| |
|
|
| T |
31358214 |
tctcctggacctgctagattctatcgcagtccaactggaaattgggcattgagtaccactggtatatacattgat |
31358140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 39 - 215
Target Start/End: Complemental strand, 31317980 - 31317804
Alignment:
| Q |
39 |
ttatttccaaattcactcacatgatctgctcaacccagcctcatactccctttatataaattgtggtggaaggcaagcgacaatcaacaaaagaacttac |
138 |
Q |
| |
|
||||||||||| | || |||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||| || | ||||| || || ||| |
|
|
| T |
31317980 |
ttatttccaaagttgctgacatgatctgcttaacccagcctcatacaccctttatataaattgtggtggaaagcaagtgatagtcaacggaaaaagttat |
31317881 |
T |
|
| Q |
139 |
gatgatgattcagattcatctggaccaactaaattccatctcagtccaacaggaaattgggcatttagcaccactgg |
215 |
Q |
| |
|
||| ||||||||| |||||| ||||| || || | || |||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
31317880 |
tatggtgattcagactcatctagaccagctcgatccgatgtcagtccaacagaaaattgggcatttagcagcactgg |
31317804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 65 - 215
Target Start/End: Original strand, 31421404 - 31421554
Alignment:
| Q |
65 |
tgctcaacccagcctcatactccctttatataaattgtggtggaaggcaagcgacaatcaacaaaagaacttacgatgatgattcagattcatctggacc |
164 |
Q |
| |
|
|||||||||||||| || |||| |||||||||||||||||||||| |||||| | | || || || || |||||||| ||||||||||| | ||||||| |
|
|
| T |
31421404 |
tgctcaacccagccgcaaactctctttatataaattgtggtggaaagcaagcaatagtcgacggaaaaagttacgatggtgattcagatttacctggacc |
31421503 |
T |
|
| Q |
165 |
aactaaattccatctcagtccaacaggaaattgggcatttagcaccactgg |
215 |
Q |
| |
|
||| ||||||| || |||||||||||||||||||| |||||| ||||| |
|
|
| T |
31421504 |
cgctagattccatgccaatccaacaggaaattgggcatatagcacaactgg |
31421554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 31304841 - 31304730
Alignment:
| Q |
22 |
tgattttcttagtttcctta---tttccaaattcactcacatgatctgctcaacccagcctcatactccctttatataaattgtggtggaaggcaagcga |
118 |
Q |
| |
|
|||||||||||||||| ||| || ||||| | ||||||||||| |||||||||||||||| | || |||||||||||||||||||||| |||| | |
|
|
| T |
31304841 |
tgattttcttagtttcattagtattgccaaagtttctcacatgatccgctcaacccagcctcaaaatctctttatataaattgtggtggaaatcaagaaa |
31304742 |
T |
|
| Q |
119 |
caatcaacaaaa |
130 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
31304741 |
cagtcaacaaaa |
31304730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University