View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18315_low_12 (Length: 597)

Name: NF18315_low_12
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18315_low_12
NF18315_low_12
[»] chr2 (12 HSPs)
chr2 (1-308)||(34579232-34579539)
chr2 (1-308)||(34584981-34585288)
chr2 (366-587)||(34579618-34579835)
chr2 (366-587)||(34585367-34585584)
chr2 (1-71)||(34571794-34571864)
chr2 (204-306)||(34590048-34590150)
chr2 (8-70)||(34562977-34563039)
chr2 (458-526)||(15007018-15007088)
chr2 (427-526)||(37009582-37009683)
chr2 (453-526)||(40020176-40020250)
chr2 (427-526)||(11564391-11564492)
chr2 (427-526)||(33146085-33146186)
[»] scaffold0051 (1 HSPs)
scaffold0051 (427-528)||(11551-11653)
[»] chr8 (7 HSPs)
chr8 (1-71)||(25865440-25865510)
chr8 (3-69)||(41943686-41943752)
chr8 (486-526)||(40299510-40299550)
chr8 (456-526)||(34678678-34678749)
chr8 (463-526)||(35366916-35366979)
chr8 (453-526)||(40791126-40791200)
chr8 (486-526)||(39998958-39998998)
[»] chr4 (6 HSPs)
chr4 (429-525)||(46076402-46076499)
chr4 (453-526)||(46490613-46490686)
chr4 (452-515)||(10037203-10037267)
chr4 (6-68)||(24860289-24860351)
chr4 (485-526)||(47930670-47930711)
chr4 (486-526)||(9785179-9785219)
[»] scaffold0102 (1 HSPs)
scaffold0102 (453-526)||(26430-26504)
[»] chr3 (5 HSPs)
chr3 (453-526)||(9830354-9830429)
chr3 (427-526)||(3090341-3090441)
chr3 (427-526)||(33978609-33978709)
chr3 (456-526)||(30127675-30127746)
chr3 (453-526)||(17058385-17058458)
[»] chr7 (3 HSPs)
chr7 (453-527)||(23232942-23233017)
chr7 (453-526)||(33869870-33869944)
chr7 (427-526)||(38987803-38987904)
[»] chr6 (5 HSPs)
chr6 (427-526)||(13489517-13489618)
chr6 (473-526)||(28713484-28713537)
chr6 (427-525)||(21802528-21802628)
chr6 (428-526)||(28494159-28494259)
chr6 (428-526)||(29806568-29806668)
[»] chr5 (5 HSPs)
chr5 (427-526)||(31850055-31850156)
chr5 (486-526)||(42598434-42598474)
chr5 (456-526)||(6844364-6844434)
chr5 (492-526)||(6123848-6123882)
chr5 (453-526)||(38955483-38955557)
[»] scaffold0068 (1 HSPs)
scaffold0068 (427-525)||(59311-59411)
[»] chr1 (5 HSPs)
chr1 (182-304)||(7595109-7595232)
chr1 (427-525)||(19071762-19071861)
chr1 (427-525)||(19119652-19119751)
chr1 (427-526)||(4007603-4007704)
chr1 (452-526)||(35383515-35383590)
[»] scaffold0189 (1 HSPs)
scaffold0189 (427-526)||(11340-11441)
[»] scaffold0136 (1 HSPs)
scaffold0136 (493-526)||(736-769)


Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-129; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 34579232 - 34579539
Alignment:
Q  1 cgagttgcttccttggtgccttaccaagggtggatctgcgagcagtttgctttgtacgcgccattgaatcgnnnnnnngaagaagactatattgaaagaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||| |||||||||    
T  34579232 cgagttgcttccttggtgccttaccaagggtggatctgcgagcagtttgctttgtacgcgccattgaatcgaaaaaa-gaagaagactattttgaaagaa 34579330  T
Q  101 gaaaggaatgaatattgtgtatgaaaggaagtgtttatataggagtggaaaaaataggattaggtcggtttaattgagattagagtgatcttggacgttg 200  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34579331 gaaaggattgaagattgtgtatgaaaggaagtgtttatataggagtggagaaaataggattaggtcggtttaattgagattagagagatcttggacgttg 34579430  T
Q  201 catgcttcaacggttatgatta-ttttttaattagaaatattaattgtaatccatgtgcttgtatcttattggttgttttgtgatgttgaggattgccaa 299  Q
    | |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||| ||||||||||||||||    
T  34579431 cttgcttcaacggttatgattatttttttaattagaaatattaattgtgatccatgtgcttgtctcttgttggttgttttgtggtgttgaggattgccaa 34579530  T
Q  300 cgtggctca 308  Q
    |||||||||    
T  34579531 cgtggctca 34579539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 34584981 - 34585288
Alignment:
Q  1 cgagttgcttccttggtgccttaccaagggtggatctgcgagcagtttgctttgtacgcgccattgaatcgnnnnnnngaagaagactatattgaaagaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||| |||||||||    
T  34584981 cgagttgcttccttggtgccttaccaagggtggatctgcgagcagtttgctttgtacgcgccattgaatcgaaaaaa-gaagaagactattttgaaagaa 34585079  T
Q  101 gaaaggaatgaatattgtgtatgaaaggaagtgtttatataggagtggaaaaaataggattaggtcggtttaattgagattagagtgatcttggacgttg 200  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34585080 gaaaggattgaagattgtgtatgaaaggaagtgtttatataggagtggagaaaataggattaggtcggtttaattgagattagagagatcttggacgttg 34585179  T
Q  201 catgcttcaacggttatgatta-ttttttaattagaaatattaattgtaatccatgtgcttgtatcttattggttgttttgtgatgttgaggattgccaa 299  Q
    | |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||| ||||||||||||||||    
T  34585180 cttgcttcaacggttatgattatttttttaattagaaatattaattgtgatccatgtgcttgtctcttgttggttgttttgtggtgttgaggattgccaa 34585279  T
Q  300 cgtggctca 308  Q
    |||||||||    
T  34585280 cgtggctca 34585288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 366 - 587
Target Start/End: Original strand, 34579618 - 34579835
Alignment:
Q  366 cggtaaattacaattccctcctttaaaagatatcttaaattacataatattcttctcctctttatgttaaaatatacaccgcctattttgaaaagtaaaa 465  Q
    ||||||||||||||||| |||||||||||||||||||||||||||  |||||| ||| |  ||||||||||||||||||  | |||||||||||||||||    
T  34579618 cggtaaattacaattccttcctttaaaagatatcttaaattacat--tattctcctctt--ttatgttaaaatatacactacttattttgaaaagtaaaa 34579713  T
Q  466 cttatacccccttctccatgagatgtttgaattaaaacttcatcccttaataattaaatattaccttgatgacagtctgttattcttagcatatttttta 565  Q
    ||||||||||| |||| |||||||| |||||  |||||||||||| ||| ||||||||||||||||||||||  ||  |||||||||||||||||||||     
T  34579714 cttatacccccctctctatgagatgcttgaaacaaaacttcatcctttagtaattaaatattaccttgatgattgtacgttattcttagcatattttttt 34579813  T
Q  566 gtcaaattcagtataatctacc 587  Q
     |||| ||||||| ||| ||||    
T  34579814 atcaatttcagtagaatttacc 34579835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 366 - 587
Target Start/End: Original strand, 34585367 - 34585584
Alignment:
Q  366 cggtaaattacaattccctcctttaaaagatatcttaaattacataatattcttctcctctttatgttaaaatatacaccgcctattttgaaaagtaaaa 465  Q
    ||||||||||||||||| |||||||||||||||||||||||||||  |||||| ||| |  ||||||||||||||||||  | |||||||||||||||||    
T  34585367 cggtaaattacaattccttcctttaaaagatatcttaaattacat--tattctcctctt--ttatgttaaaatatacactacttattttgaaaagtaaaa 34585462  T
Q  466 cttatacccccttctccatgagatgtttgaattaaaacttcatcccttaataattaaatattaccttgatgacagtctgttattcttagcatatttttta 565  Q
    ||||||||||| |||| |||||||| |||||  |||||||||||| ||| ||||||||||||||||||||||  ||  |||||||||||||||||||||     
T  34585463 cttatacccccctctctatgagatgcttgaaacaaaacttcatcctttagtaattaaatattaccttgatgattgtacgttattcttagcatattttttt 34585562  T
Q  566 gtcaaattcagtataatctacc 587  Q
     |||| ||||||| ||| ||||    
T  34585563 atcaatttcagtagaatttacc 34585584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 34571794 - 34571864
Alignment:
Q  1 cgagttgcttccttggtgccttaccaagggtggatctgcgagcagtttgctttgtacgcgccattgaatcg 71  Q
    |||||| ||||||||||||||| |||  ||||||| |||||||||||||||||||||||||||||||||||    
T  34571794 cgagttccttccttggtgccttgccaccggtggatttgcgagcagtttgctttgtacgcgccattgaatcg 34571864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 204 - 306
Target Start/End: Original strand, 34590048 - 34590150
Alignment:
Q  204 gcttcaacggttatgattattttttaattagaaatattaattgtaatccatgtgcttgtatcttattggttgttttgtgatgttgaggattgccaacgtg 303  Q
    |||||||||||  |||| |||||||||||||||||||||||| | ||| | |||||||| || |||||||||||||||| | | |||||||||||| |||    
T  34590048 gcttcaacggtggtgatgattttttaattagaaatattaattctgatctacgtgcttgtttcctattggttgttttgtggtttcgaggattgccaatgtg 34590147  T
Q  304 gct 306  Q
    |||    
T  34590148 gct 34590150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 34562977 - 34563039
Alignment:
Q  8 cttccttggtgccttaccaagggtggatctgcgagcagtttgctttgtacgcgccattgaatc 70  Q
    |||| |||||||||| |||  ||||||| ||||||||||||||||||||||||||||||||||    
T  34562977 cttcgttggtgccttgccaccggtggatttgcgagcagtttgctttgtacgcgccattgaatc 34563039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 458 - 526
Target Start/End: Complemental strand, 15007088 - 15007018
Alignment:
Q  458 aagtaaaacttatac--ccccttctccatgagatgtttgaattaaaacttcatcccttaataattaaatat 526  Q
    |||||||| ||||||  ||||||| | || |||||||||||||| ||||||||||||||||||||||||||    
T  15007088 aagtaaaatttatactcccccttccctataagatgtttgaattacaacttcatcccttaataattaaatat 15007018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 427 - 526
Target Start/End: Complemental strand, 37009683 - 37009582
Alignment:
Q  427 ttatgttaaaatatacac-cgcctattttgaaaagtaaaacttatacccccttctcc-atgagatgtttgaattaaaacttcatcccttaataattaaat 524  Q
    |||||||||||||||||| | |||   ||||||||||||| ||| || ||| || || || |||||||||||||| ||| || |||||||||||||||||    
T  37009683 ttatgttaaaatatacactcccctcccttgaaaagtaaaatttacactcccctcccctataagatgtttgaattacaacctcttcccttaataattaaat 37009584  T
Q  525 at 526  Q
    ||    
T  37009583 at 37009582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 526
Target Start/End: Original strand, 40020176 - 40020250
Alignment:
Q  453 ttgaaaagtaaaacttatac-ccccttctccatgagatgtttgaattaaaacttcatcccttaataattaaatat 526  Q
    ||||||| ||||| |||||| ||||||| |  |||||||||||||||  |||| | |||||||||||||||||||    
T  40020176 ttgaaaaataaaatttatactccccttccctttgagatgtttgaattgcaactccctcccttaataattaaatat 40020250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 526
Target Start/End: Complemental strand, 11564492 - 11564391
Alignment:
Q  427 ttatgttaaaatatacac-cgcctattttgaaaagtaaaacttatacccccttctcc-atgagatgtttgaattaaaacttcatcccttaataattaaat 524  Q
    |||||||||||||||||| | |||   |||||||||||||||||||| | | || || || ||||| |||||||| | | || |||||||||||||||||    
T  11564492 ttatgttaaaatatacactctcctcccttgaaaagtaaaacttatactctcatcccctataagatgcttgaattacatcctcctcccttaataattaaat 11564393  T
Q  525 at 526  Q
    ||    
T  11564392 at 11564391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 526
Target Start/End: Original strand, 33146085 - 33146186
Alignment:
Q  427 ttatgttaaaatatacac-cgcctattttgaaaagtaaaacttatacccccttctcc-atgagatgtttgaattaaaacttcatcccttaataattaaat 524  Q
    |||||||||||||||||| | |||   |||||||| |||| |||||||||| || || || ||||| |||||||| |||  | |||||||||||||||||    
T  33146085 ttatgttaaaatatacactcccctcccttgaaaaggaaaatttatacccccctcccctataagatgcttgaattacaaccccctcccttaataattaaat 33146184  T
Q  525 at 526  Q
    ||    
T  33146185 at 33146186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 427 - 528
Target Start/End: Complemental strand, 11653 - 11551
Alignment:
Q  427 ttatgttaaaatatacac-cgcctattttgaaaagtaaaacttatacccccttctccatgagatgtttgaattaaaacttcatcccttaataattaaata 525  Q
    |||||||||| ||||||| | ||| | ||||||||||||| ||||||||||| | | || ||||| |||||||| ||| |||||||||||||||||||||    
T  11653 ttatgttaaattatacactcccctctcttgaaaagtaaaatttataccccctcccctataagatgcttgaattacaacctcatcccttaataattaaata 11554  T
Q  526 tta 528  Q
    |||    
T  11553 tta 11551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 25865510 - 25865440
Alignment:
Q  1 cgagttgcttccttggtgccttaccaagggtggatctgcgagcagtttgctttgtacgcgccattgaatcg 71  Q
    |||||||||||||||||||||| ||   ||||||| |||||||||||||||| ||||| ||||||||||||    
T  25865510 cgagttgcttccttggtgccttgccgccggtggatttgcgagcagtttgcttcgtacgagccattgaatcg 25865440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 41943752 - 41943686
Alignment:
Q  3 agttgcttccttggtgccttaccaagggtggatctgcgagcagtttgctttgtacgcgccattgaat 69  Q
    |||||||||||||| ||||| |||  ||||||| |||||||||||||||| ||||| ||||||||||    
T  41943752 agttgcttccttggagccttgccaccggtggatttgcgagcagtttgcttagtacgagccattgaat 41943686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 486 - 526
Target Start/End: Complemental strand, 40299550 - 40299510
Alignment:
Q  486 agatgtttgaattaaaacttcatcccttaataattaaatat 526  Q
    ||||| |||||||| ||||||||||||||||||||||||||    
T  40299550 agatgcttgaattacaacttcatcccttaataattaaatat 40299510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 456 - 526
Target Start/End: Original strand, 34678678 - 34678749
Alignment:
Q  456 aaaagtaaaacttatacccccttctcc-atgagatgtttgaattaaaacttcatcccttaataattaaatat 526  Q
    |||||||||| |||||  ||| ||||| || ||||| |||||||| ||| ||||||||||||||||||||||    
T  34678678 aaaagtaaaatttataatcccctctcctataagatgcttgaattacaacgtcatcccttaataattaaatat 34678749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 526
Target Start/End: Complemental strand, 35366979 - 35366916
Alignment:
Q  463 aaacttatacccccttctccatgagatgtttgaattaaaacttcatcccttaataattaaatat 526  Q
    |||||| ||| ||| || ||||||||||||||||||| ||||   |||||||||||||||||||    
T  35366979 aaacttgtactcccctccccatgagatgtttgaattacaactcactcccttaataattaaatat 35366916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 526
Target Start/End: Original strand, 40791126 - 40791200
Alignment:
Q  453 ttgaaaagtaaaacttatacccccttctcc-atgagatgtttgaattaaaacttcatcccttaataattaaatat 526  Q
    ||||||||||||| |||||| |||||| |  || |||||||||||||| |||  | |||||||||||||||||||    
T  40791126 ttgaaaagtaaaatttatactcccttcccttataagatgtttgaattacaaccccctcccttaataattaaatat 40791200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 526
Target Start/End: Complemental strand, 39998998 - 39998958
Alignment:
Q  486 agatgtttgaattaaaacttcatcccttaataattaaatat 526  Q
    ||||| |||||||| ||| ||||||||||||||||||||||    
T  39998998 agatgcttgaattacaacctcatcccttaataattaaatat 39998958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 429 - 525
Target Start/End: Original strand, 46076402 - 46076499
Alignment:
Q  429 atgttaaaatatacaccgcctattttgaaaagtaaaacttatacccc-cttctccatgagatgtttgaattaaaacttcatcccttaataattaaata 525  Q
    ||||||||||||||||  | | ||||||||||||||| |||||| || |||| | |||||||| |||||||| |||  ||||||||||||||||||||    
T  46076402 atgttaaaatatacactacatcttttgaaaagtaaaatttatactcctcttccctatgagatgattgaattacaaccacatcccttaataattaaata 46076499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 453 - 526
Target Start/End: Complemental strand, 46490686 - 46490613
Alignment:
Q  453 ttgaaaagtaaaacttatacccccttctccatgagatgtttgaattaaaacttcatcccttaataattaaatat 526  Q
    ||||||| |||||||||||| ||| || |||||||||| |||||||| ||||   |||||| ||||||||||||    
T  46490686 ttgaaaaataaaacttatactcccctccccatgagatgcttgaattacaactctctcccttgataattaaatat 46490613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 452 - 515
Target Start/End: Complemental strand, 10037267 - 10037203
Alignment:
Q  452 tttgaaaagtaaaacttatac-ccccttctccatgagatgtttgaattaaaacttcatcccttaa 515  Q
    ||||||||||||||||||||| |||||| || ||||||| ||||||||| ||| || ||||||||    
T  10037267 tttgaaaagtaaaacttatactccccttttctatgagatatttgaattacaacatcctcccttaa 10037203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 24860351 - 24860289
Alignment:
Q  6 tgcttccttggtgccttaccaagggtggatctgcgagcagtttgctttgtacgcgccattgaa 68  Q
    |||||||||||||| || ||   ||||||| ||||||| |||||||||||||| |||||||||    
T  24860351 tgcttccttggtgcttttcctccggtggatttgcgagctgtttgctttgtacgagccattgaa 24860289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 526
Target Start/End: Original strand, 47930670 - 47930711
Alignment:
Q  485 gagatgtttgaattaaaacttcatcccttaataattaaatat 526  Q
    |||||| |||||||| ||| ||||||||||||||||||||||    
T  47930670 gagatgcttgaattacaacctcatcccttaataattaaatat 47930711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 526
Target Start/End: Complemental strand, 9785219 - 9785179
Alignment:
Q  486 agatgtttgaattaaaacttcatcccttaataattaaatat 526  Q
    |||||||||||||| ||| || |||||||||||||||||||    
T  9785219 agatgtttgaattacaacctcctcccttaataattaaatat 9785179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 453 - 526
Target Start/End: Original strand, 26430 - 26504
Alignment:
Q  453 ttgaaaagtaaaacttatacccccttctcc-atgagatgtttgaattaaaacttcatcccttaataattaaatat 526  Q
    ||||||||||||| | |||| ||||||||| || ||||| |||||||| ||| ||||||||||||||||||||||    
T  26430 ttgaaaagtaaaattgatactcccttctcctataagatgcttgaattacaacatcatcccttaataattaaatat 26504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 453 - 526
Target Start/End: Original strand, 9830354 - 9830429
Alignment:
Q  453 ttgaaaagtaaaacttataccccc--ttctccatgagatgtttgaattaaaacttcatcccttaataattaaatat 526  Q
    ||||||| ||||| ||||||||||  | | |||||||||| |||||||| ||| ||||||||||||||||||||||    
T  9830354 ttgaaaaataaaagttataccccccctcccccatgagatgcttgaattacaacctcatcccttaataattaaatat 9830429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 526
Target Start/End: Complemental strand, 3090441 - 3090341
Alignment:
Q  427 ttatgttaaaatatacac-cgcctattttgaaaagtaaaacttatacccccttctccatgagatgtttgaattaaaacttcatcccttaataattaaata 525  Q
    |||||||||||||||||| | |||   |||||||| |||| ||||||||||| | | || ||||| |||||||| |||  | ||||||||||||||||||    
T  3090441 ttatgttaaaatatacactcccctcccttgaaaaggaaaatttataccccctcccctataagatgcttgaattacaaccccctcccttaataattaaata 3090342  T
Q  526 t 526  Q
    |    
T  3090341 t 3090341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 526
Target Start/End: Original strand, 33978609 - 33978709
Alignment:
Q  427 ttatgttaaaatatacaccgcctattttgaaaagtaaaacttatacccccttctcc-atgagatgtttgaattaaaacttcatcccttaataattaaata 525  Q
    ||||||||||||||| | | |||  |||||||||||||| |||||| | | || || || |||||||||||||| |||  | ||||||||||||||||||    
T  33978609 ttatgttaaaatatatatcccctcctttgaaaagtaaaatttatactctcctcccctataagatgtttgaattacaaccccctcccttaataattaaata 33978708  T
Q  526 t 526  Q
    |    
T  33978709 t 33978709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 456 - 526
Target Start/End: Original strand, 30127675 - 30127746
Alignment:
Q  456 aaaagtaaaacttatac-ccccttctccatgagatgtttgaattaaaacttcatcccttaataattaaatat 526  Q
    |||||||||| |||||| ||||| ||| ||||||||||||||||| |||| | ||||||| | |||||||||    
T  30127675 aaaagtaaaatttatactcccctcctctatgagatgtttgaattacaactccctcccttatttattaaatat 30127746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 526
Target Start/End: Complemental strand, 17058458 - 17058385
Alignment:
Q  453 ttgaaaagtaaaacttatacccccttctccatgagatgtttgaattaaaacttcatcccttaataattaaatat 526  Q
    ||||||| |||||||||||| | | || |||||||||| |||||||| |||  | || ||||||||||||||||    
T  17058458 ttgaaaaataaaacttatactcgcctccccatgagatgcttgaattacaaccgcctctcttaataattaaatat 17058385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 453 - 527
Target Start/End: Original strand, 23232942 - 23233017
Alignment:
Q  453 ttgaaaagtaaaacttatac-ccccttctccatgagatgtttgaattaaaacttcatcccttaataattaaatatt 527  Q
    ||||||||||||| |||||| ||||| ||| || ||||| |||||||| ||| |||||||| ||||||||||||||    
T  23232942 ttgaaaagtaaaatttatactcccctcctctataagatgcttgaattacaacctcatccctcaataattaaatatt 23233017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 526
Target Start/End: Complemental strand, 33869944 - 33869870
Alignment:
Q  453 ttgaaaagtaaaacttatacccccttctcc-atgagatgtttgaattaaaacttcatcccttaataattaaatat 526  Q
    ||||||||||||| |||||| ||| ||||  || |||||||||||||| ||| || |||||||||| ||||||||    
T  33869944 ttgaaaagtaaaatttatactcccctctcttataagatgtttgaattacaacctcctcccttaatagttaaatat 33869870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 526
Target Start/End: Original strand, 38987803 - 38987904
Alignment:
Q  427 ttatgttaaaatatacaccgc-ctattttgaaaagtaaaacttatacccccttctcc-atgagatgtttgaattaaaacttcatcccttaataattaaat 524  Q
    ||||||||||||||||||  | || | ||||||||||||| ||| || ||| || || || |||||||||||||| |||  | |||||||||||||||||    
T  38987803 ttatgttaaaatatacactccactctcttgaaaagtaaaatttacactcccctcccctataagatgtttgaattacaaccccctcccttaataattaaat 38987902  T
Q  525 at 526  Q
    ||    
T  38987903 at 38987904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 526
Target Start/End: Original strand, 13489517 - 13489618
Alignment:
Q  427 ttatgttaaaatatacac-cgcctattttgaaaagtaaaacttatacccccttctcc---atgagatgtttgaattaaaacttcatcccttaataattaa 522  Q
    ||||||||||||||| || | | ||||||||| ||||||| |||||| |  ||||||   ||||||||||||||||| || ||| |||||||||||||||    
T  13489517 ttatgttaaaatatatactctcatattttgaatagtaaaatttatactc--ttctcccttatgagatgtttgaattacaaattcctcccttaataattaa 13489614  T
Q  523 atat 526  Q
    ||||    
T  13489615 atat 13489618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 473 - 526
Target Start/End: Complemental strand, 28713537 - 28713484
Alignment:
Q  473 ccccttctccatgagatgtttgaattaaaacttcatcccttaataattaaatat 526  Q
    ||||| ||| || |||||||||||||| ||| ||||||||||||||||||||||    
T  28713537 cccctcctctataagatgtttgaattacaacctcatcccttaataattaaatat 28713484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 525
Target Start/End: Complemental strand, 21802628 - 21802528
Alignment:
Q  427 ttatgttaaaatatacac-cgcctattttgaaaagtaaaacttatac-ccccttctccatgagatgtttgaattaaaacttcatcccttaataattaaat 524  Q
    |||||||||||||||||| | |||   ||||||||||||| |||||| ||||| ||| || ||||| |||||||| |||  | |||||||||||||||||    
T  21802628 ttatgttaaaatatacactcccctcccttgaaaagtaaaatttatactcccctcctctataagatgcttgaattacaaccccctcccttaataattaaat 21802529  T
Q  525 a 525  Q
    |    
T  21802528 a 21802528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 526
Target Start/End: Original strand, 28494159 - 28494259
Alignment:
Q  428 tatgttaaaatataca-ccgcctattttgaaaagtaaaacttatacccccttctcc-atgagatgtttgaattaaaacttcatcccttaataattaaata 525  Q
    |||||||||||||||| || |||   ||||||||||||| |||||| | | || || || ||||| |||||||| |||||| || |||||||||||||||    
T  28494159 tatgttaaaatatacatcctcctcccttgaaaagtaaaatttatactctcatcccctataagatgcttgaattacaacttcctctcttaataattaaata 28494258  T
Q  526 t 526  Q
    |    
T  28494259 t 28494259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 526
Target Start/End: Original strand, 29806568 - 29806668
Alignment:
Q  428 tatgttaaaatataca-ccgcctattttgaaaagtaaaacttatacccccttctcc-atgagatgtttgaattaaaacttcatcccttaataattaaata 525  Q
    |||||||||||||||| || |||   ||||||||||||| |||||| | | || || || ||||| |||||||| |||||| || |||||||||||||||    
T  29806568 tatgttaaaatatacatcctcctcccttgaaaagtaaaatttatactctcatcccctataagatgcttgaattacaacttcctctcttaataattaaata 29806667  T
Q  526 t 526  Q
    |    
T  29806668 t 29806668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 427 - 526
Target Start/End: Original strand, 31850055 - 31850156
Alignment:
Q  427 ttatgttaaaatatacaccg-cctattttgaaaagtaaaacttatac-ccccttctccatgagatgtttgaattaaaacttcatcccttaataattaaat 524  Q
    ||||||||||||||||||   |||  |||||||| ||||| |||||| ||||||| |  |||||||||||||||  |||| | |||||||||||||||||    
T  31850055 ttatgttaaaatatacactttcctcctttgaaaaataaaatttatactccccttccctttgagatgtttgaattccaactccctcccttaataattaaat 31850154  T
Q  525 at 526  Q
    ||    
T  31850155 at 31850156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 486 - 526
Target Start/End: Original strand, 42598434 - 42598474
Alignment:
Q  486 agatgtttgaattaaaacttcatcccttaataattaaatat 526  Q
    |||||||||||||| |||||| |||||||||||||||||||    
T  42598434 agatgtttgaattacaacttcctcccttaataattaaatat 42598474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 456 - 526
Target Start/End: Original strand, 6844364 - 6844434
Alignment:
Q  456 aaaagtaaaacttatacccccttctcc-atgagatgtttgaattaaaacttcatcccttaataattaaatat 526  Q
    ||||| |||| ||||||||||| |||| || |||||||||||||| |||||| ||||||| |||||||||||    
T  6844364 aaaagaaaaatttataccccct-ctcctataagatgtttgaattacaacttcctcccttattaattaaatat 6844434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 492 - 526
Target Start/End: Complemental strand, 6123882 - 6123848
Alignment:
Q  492 ttgaattaaaacttcatcccttaataattaaatat 526  Q
    |||||||| ||||||||||||||||||||||||||    
T  6123882 ttgaattacaacttcatcccttaataattaaatat 6123848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 526
Target Start/End: Complemental strand, 38955557 - 38955483
Alignment:
Q  453 ttgaaaagtaaaacttatacccccttctc-catgagatgtttgaattaaaacttcatcccttaataattaaatat 526  Q
    ||||||||||||| |||||| |||||| | ||| |||||||||||||| |||    |||||||||||||||||||    
T  38955557 ttgaaaagtaaaatttatactcccttccctcataagatgtttgaattacaacactctcccttaataattaaatat 38955483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 525
Target Start/End: Original strand, 59311 - 59411
Alignment:
Q  427 ttatgttaaaatatacac-cgcctattttgaaaagtaaaacttatac-ccccttctccatgagatgtttgaattaaaacttcatcccttaataattaaat 524  Q
    |||||||||||||||||| | |||   ||||||||||||| |||||| ||||| ||| || ||||| |||||||| |||  | |||||||||||||||||    
T  59311 ttatgttaaaatatacactcccctcccttgaaaagtaaaatttatactcccctcctctataagatgcttgaattacaaccccctcccttaataattaaat 59410  T
Q  525 a 525  Q
    |    
T  59411 a 59411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 304
Target Start/End: Original strand, 7595109 - 7595232
Alignment:
Q  182 agagtgatcttggacgttgcatgcttcaacggttatgatta-ttttttaattagaaatattaattgtaatccatgtgcttgtatcttattggttgttttg 280  Q
    |||| |||| ||||| ||| ||||||||||||| ||||| | |||||||| |  ||||||||| ||  |||| |||| |||| | |||||||||| |||     
T  7595109 agagagatcgtggactttgaatgcttcaacggtaatgatgagttttttaagtgaaaatattaagtgcgatccgtgtggttgtttattattggttggttta 7595208  T
Q  281 tgatgttgaggattgccaacgtgg 304  Q
    ||| |||| ||||||||| |||||    
T  7595209 tgaagttgcggattgccagcgtgg 7595232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 525
Target Start/End: Original strand, 19071762 - 19071861
Alignment:
Q  427 ttatgttaaaatatacaccgcctattttgaaaagtaaaacttatac-ccccttctccatgagatgtttgaattaaaacttcatcccttaataattaaata 525  Q
    ||||||||||||||||||  |||    |||||||||||| |||||| ||||| ||| || ||||| |||||||| |||  | ||||||||||||||||||    
T  19071762 ttatgttaaaatatacactccctcccgtgaaaagtaaaatttatactcccctcctctataagatgcttgaattacaaccacctcccttaataattaaata 19071861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 525
Target Start/End: Original strand, 19119652 - 19119751
Alignment:
Q  427 ttatgttaaaatatacaccgcctattttgaaaagtaaaacttatac-ccccttctccatgagatgtttgaattaaaacttcatcccttaataattaaata 525  Q
    ||||||||||||||||||  |||    |||||||||||| |||||| ||||| ||| || ||||| |||||||| |||  | ||||||||||||||||||    
T  19119652 ttatgttaaaatatacactccctcccgtgaaaagtaaaatttatactcccctcctctataagatgcttgaattacaaccacctcccttaataattaaata 19119751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 526
Target Start/End: Original strand, 4007603 - 4007704
Alignment:
Q  427 ttatgttaaaatatacaccgc-ctattttgaaaagtaaaacttatac-ccccttctccatgagatgtttgaattaaaacttcatcccttaataattaaat 524  Q
    ||||||||||||||||||| | ||  |||||||||||||| |||||| || |||| | || ||||| |||||||| | |  | |||||||||||||||||    
T  4007603 ttatgttaaaatatacacccctctcctttgaaaagtaaaatttatactcctcttccctataagatgcttgaattacatccccctcccttaataattaaat 4007702  T
Q  525 at 526  Q
    ||    
T  4007703 at 4007704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 526
Target Start/End: Complemental strand, 35383590 - 35383515
Alignment:
Q  452 tttgaaaagtaaaacttata--cccccttctccatgagatgtttgaattaaaacttcatcccttaataattaaatat 526  Q
    |||||||||||||||||| |  |||| ||| | |||| |||||||||||| |||||| | |||||||||||||||||    
T  35383590 tttgaaaagtaaaacttacactcccctttccctatgaaatgtttgaattacaacttc-ttccttaataattaaatat 35383515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 526
Target Start/End: Original strand, 11340 - 11441
Alignment:
Q  427 ttatgttaaaatatacac-cgcctattttgaaaagtaaaacttatacccccttctcc-atgagatgtttgaattaaaacttcatcccttaataattaaat 524  Q
    |||||||||||||||||| | |||   ||||||||||||| ||| || |||||| || || ||||| |||||||| |||  | |||||||||||||||||    
T  11340 ttatgttaaaatatacactcccctcccttgaaaagtaaaatttacactcccttcccctataagatgcttgaattacaaccccctcccttaataattaaat 11439  T
Q  525 at 526  Q
    ||    
T  11440 at 11441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 526
Target Start/End: Complemental strand, 769 - 736
Alignment:
Q  493 tgaattaaaacttcatcccttaataattaaatat 526  Q
    ||||||| ||||||||||||||||||||||||||    
T  769 tgaattacaacttcatcccttaataattaaatat 736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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