View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18315_low_13 (Length: 595)

Name: NF18315_low_13
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18315_low_13
NF18315_low_13
[»] chr7 (4 HSPs)
chr7 (23-507)||(48361480-48361952)
chr7 (280-401)||(35779937-35780058)
chr7 (25-243)||(35780071-35780289)
chr7 (486-580)||(35779767-35779861)
[»] chr5 (29 HSPs)
chr5 (25-595)||(9074356-9074911)
chr5 (23-595)||(8535416-8535979)
chr5 (27-419)||(1599932-1600313)
chr5 (23-401)||(8641480-8641858)
chr5 (23-243)||(8529195-8529415)
chr5 (280-575)||(8528881-8529173)
chr5 (32-401)||(8644321-8644687)
chr5 (37-243)||(2844702-2844911)
chr5 (336-409)||(8636968-8637041)
chr5 (37-243)||(2874139-2874348)
chr5 (37-243)||(2856529-2856738)
chr5 (23-151)||(9003813-9003939)
chr5 (336-401)||(8677923-8677988)
chr5 (338-411)||(2856824-2856897)
chr5 (338-411)||(2874434-2874507)
chr5 (344-401)||(2904938-2904995)
chr5 (338-411)||(2844997-2845070)
chr5 (29-221)||(8678091-8678293)
chr5 (168-237)||(2904779-2904848)
chr5 (287-368)||(8547992-8548073)
chr5 (32-221)||(8637144-8637342)
chr5 (450-563)||(8677752-8677865)
chr5 (34-100)||(2904642-2904708)
chr5 (35-146)||(8547750-8547857)
chr5 (464-533)||(8636844-8636913)
chr5 (454-506)||(8548141-8548193)
chr5 (459-498)||(1600338-1600377)
chr5 (450-533)||(8644189-8644272)
chr5 (34-100)||(3380858-3380924)
[»] chr4 (1 HSPs)
chr4 (23-575)||(9443042-9443576)
[»] chr1 (4 HSPs)
chr1 (334-419)||(26324200-26324285)
chr1 (23-243)||(5131025-5131245)
chr1 (464-507)||(5130810-5130853)
chr1 (23-71)||(26324135-26324183)
[»] scaffold0627 (2 HSPs)
scaffold0627 (280-419)||(4738-4877)
scaffold0627 (464-506)||(4663-4705)
[»] chr6 (1 HSPs)
chr6 (280-401)||(16716455-16716576)


Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 23 - 507
Target Start/End: Original strand, 48361480 - 48361952
Alignment:
Q  23 agcgtgtgatccttgagataaacacacttggatcaccatcatggagaaacgttgaagtggatcctcaaatttctttttcggagctcaattatcctacttg 122  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||| || ||||||||||||||||| ||||||||||||   ||| | ||||| |||||    
T  48361480 agcgtgtgatccttgagataaacacacttggaacaccatcctggaggaatgttgaagtggatcctcacatttctttttcgagtctcgagtatcccacttg 48361579  T
Q  123 tgtgaatggtgcgcttcattggataagatctgcgcgtaaaaaatggtcaatattgtttttctcttttgaaagtgagaggctgcaattatttccttctccg 222  Q
    |||||||||||| |||||||||||||||| || | || |  || |||||||||||||||||| |||||||||||||||| |||| | ||||||||||||     
T  48361580 tgtgaatggtgcacttcattggataagatttgagggtcagcaaaggtcaatattgtttttctgttttgaaagtgagagggtgcagtcatttccttctcct 48361679  T
Q  223 ccacatgtgtttggaaatcatcctaataatggaaatcattgtaacttcaggagaaagattagaatgggagaatcaaagggattactttacatttgtgact 322  Q
    ||||||||||||||||||||   ||||||||||| || | |||||      ||  | ||||| |||||||||| ||||||||| ||||||||||||||||    
T  48361680 ccacatgtgtttggaaatca---taataatggaattcttggtaac------aggcatattagcatgggagaattaaagggatttctttacatttgtgact 48361770  T
Q  323 ggatcttgttctctgatgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacatcaatacttcgttcaatccatc 422  Q
     || |||    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||| ||    
T  48361771 cgacctttgcatctgatgtttcaatgtgggttatgaatgaatatggtattgaagaatcatagactaaggtttacaacatcaatactgcgttcaatccttc 48361870  T
Q  423 tggcgatcgtacttcatggactacaaatttatgtttgcctataaaacactttgaagaaggtgctgccatattgttacatcattcc 507  Q
      ||  |  | |||| |||  | ||  ||||||   ||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  48361871 gagcagttttgcttcttggcattcagctttatg---gccgataaaacactttgaagaaggtgctgccatattgttatatcattcc 48361952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 280 - 401
Target Start/End: Complemental strand, 35780058 - 35779937
Alignment:
Q  280 attagaatgggagaatcaaagggattactttacatttgtgactggatcttgttctctgatgtttcaatgtgggttatgaatgaatatggcattgaagaat 379  Q
    ||||| |||||||||| ||||||||| |||||||||||||||| ||  || ||   ||||||| |||||||||||||||||||  |||||||||||||||    
T  35780058 attagcatgggagaattaaagggatttctttacatttgtgacttgaatttttttgttgatgttacaatgtgggttatgaatgagcatggcattgaagaat 35779959  T
Q  380 catggactaaggtttacaacat 401  Q
    | ||||||||||||||||||||    
T  35779958 cgtggactaaggtttacaacat 35779937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 25 - 243
Target Start/End: Complemental strand, 35780289 - 35780071
Alignment:
Q  25 cgtgtgatccttgagataaacacacttggatcaccatcatggagaaacgttgaagtggatcctcaaatttctttttcggagctcaattatcctacttgtg 124  Q
    ||||| ||||| || ||||||||||||||| |||||||||||||||  ||||||||||||||||  |||||| ||||    || || ||||| |||||||    
T  35780289 cgtgttatcctcgaaataaacacacttggagcaccatcatggagaactgttgaagtggatcctcgtatttctatttcaagccttaagtatcccacttgtg 35780190  T
Q  125 tgaatggtgcgcttcattggataagatctgcgcgtaaaaaatggtcaatattgtttttctcttttgaaagtgagaggctgcaattatttccttctccgcc 224  Q
    ||||||||| |||||| ||||| | || || | |  || ||  ||||||||| | ||| | ||||||| |||||||| ||||   |||||||||||| ||    
T  35780189 tgaatggtgtgcttcactggatcaaatttgaggggcaacaaaagtcaatattatgtttttgttttgaaggtgagaggttgcagccatttccttctcctcc 35780090  T
Q  225 acatgtgtttggaaatcat 243  Q
    |||||||||||||| ||||    
T  35780089 acatgtgtttggaattcat 35780071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 486 - 580
Target Start/End: Complemental strand, 35779861 - 35779767
Alignment:
Q  486 tgccatattgttacatcattcccaaaattgtttgatgtactatgaacctgaaaaatatgaattcaaacttttccgaatacatgggagtcgttcaa 580  Q
    ||||||||||||| |||||||    |||||||| || |||| ||||||||| ||||||| || |||| |||| ||||| | ||||| ||||||||    
T  35779861 tgccatattgttatatcattcatgcaattgttttatctactttgaacctgagaaatatggatacaaagtttttcgaattcgtgggactcgttcaa 35779767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 25 - 595
Target Start/End: Original strand, 9074356 - 9074911
Alignment:
Q  25 cgtgtgatccttgagataaacacacttggatcaccatcatggagaaacgttgaagtggatcctcaaatttctttttcggagctcaattatcctacttgtg 124  Q
    |||||||||||| ||||||||||||||||| || ||  || |||||| |||||||||||||||||||||||||||| |   ||| | ||||| |||||||    
T  9074356 cgtgtgatccttcagataaacacacttggaacaacaatattgagaaatgttgaagtggatcctcaaatttcttttttgagtctcgagtatcccacttgtg 9074455  T
Q  125 tgaatggtgcgcttcattggataagatctgcgcgtaaaaaatggtcaatattgtttttctcttttgaaagtgagaggctgcaattatttccttctccgcc 224  Q
    |||||||||| |||||||||||||||| ||    | |  || |||||||||||||||||| |||||||||||||||| |||| | |||||||||||| ||    
T  9074456 tgaatggtgcacttcattggataagatatgaaaatcagcaaaggtcaatattgtttttctgttttgaaagtgagaggttgcagtcatttccttctcctcc 9074555  T
Q  225 acatgtgtttggaaatcatcctaataatggaaatcattgtaacttcaggagaaagattagaatgggagaatcaaagggattactttacatttgtgactgg 324  Q
     |||||||||||||| |||   |||| ||||| |  |  ||||      ||| | || |   ||||||||| ||||||||| ||||||||||||||||||    
T  9074556 gcatgtgtttggaaaccat---aatagtggaattgttgataac------agacatatca---tgggagaattaaagggatttctttacatttgtgactgg 9074643  T
Q  325 atcttgttctctgatgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacatcaatacttcgttcaatccatctg 424  Q
    |  || || |||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||  |||||||||||||||| || |    
T  9074644 acatttttatctgatgtttcagtgtgggttatgaatgaatatggtattgaagaatcatggactaaagtttacaacattgatacttcgttcaatccttcgg 9074743  T
Q  425 gcgatcgtacttcatggactacaaatttatgtttgcctataaaacactttgaagaaggtgctgccatattgttacatcattcccaaaattgtttgatgta 524  Q
    ||  || || | |||||  | ||  ||||||   ||| |||||||||||||||||||||||||||||||||||| |||||| | | |||||||| || |     
T  9074744 gctgtcttattacatggggttcaggtttatg---gccgataaaacactttgaagaaggtgctgccatattgttatatcattgctacaattgttttatctt 9074840  T
Q  525 ctatgaacctgaaaaatatgaattcaaacttttccgaatacatgggagtcgttcaatgttttttgaagtaa 595  Q
    |||||||||||| ||||||| ||||||| |||| ||||| |||||||||| ||||| ||||||||||||||    
T  9074841 ctatgaacctgagaaatatggattcaaagtttttcgaattcatgggagtcattcaaagttttttgaagtaa 9074911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 23 - 595
Target Start/End: Complemental strand, 8535979 - 8535416
Alignment:
Q  23 agcgtgtgatccttgagataaacacacttggatcaccatcatggagaaacgttgaagtggatcctcaaatttctttttcggagctcaattatcctacttg 122  Q
    ||||| ||| |||||||||||||||||||||| | ||||| |||||||| ||||||||||||||||||||||||||||||   || || ||||| |||||    
T  8535979 agcgtttgacccttgagataaacacacttggaaccccatcctggagaaatgttgaagtggatcctcaaatttctttttcgagtctaaagtatcccacttg 8535880  T
Q  123 tgtgaatggtgcgcttcattggataagatctgcgcgtaaaaaatggtcaatattgtttttctcttttgaaagtgagaggctgcaattatttccttctccg 222  Q
    |||||||||||| || |||||| |||||| ||   ||    || ||||||||||| ||||||  ||||||||||||| |||| | | ||||||||||||     
T  8535879 tgtgaatggtgcactacattggctaagatttgatggtctgcaaaggtcaatattgattttctgctttgaaagtgagacgctgaagtcatttccttctcct 8535780  T
Q  223 ccacatgtgtttggaaatcatcctaataatggaaatcattgtaacttcaggagaaagattagaatgggagaatcaaagggattactttacatttgtgact 322  Q
    |||||  ||||||||||||||   |||||||||  || | ||||       ||| | ||||| |||||||||| ||||||||| |||||||||||||| |    
T  8535779 ccacagatgtttggaaatcat---aataatggatttcttagtaat------agacatattagcatgggagaattaaagggatttctttacatttgtgatt 8535689  T
Q  323 ggatcttgttctctgatgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacatcaatacttcgttcaatccatc 422  Q
     || ||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||  ||||||| |||||||| ||    
T  8535688 cgacctttttatctgatgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacattgatacttcattcaatccttc 8535589  T
Q  423 tggcgatcgtacttcatggactacaaatttatgtttgcctataaaacactttgaagaaggtgctgccatattgttacatcattcccaaaattgtttgatg 522  Q
     |    ||||  | || |||       |||| | | ||| |||||||||||||||||||||||||||||||||||| ||||||||   |||||||| ||     
T  8535588 ggaaagtcgtgttccacggagatatggtttaagctggccaataaaacactttgaagaaggtgctgccatattgttatatcattcctgcaattgttttatc 8535489  T
Q  523 tactatgaacctgaaaaatatgaattcaaacttttccgaatacatgggagtcgttcaatgttttttgaagtaa 595  Q
    |||||||||||||| ||||||| |||| || |||| |||||  | |||||| ||||||  |||||||||||||    
T  8535488 tactatgaacctgagaaatatggattcgaagtttttcgaatttacgggagtagttcaaatttttttgaagtaa 8535416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 27 - 419
Target Start/End: Original strand, 1599932 - 1600313
Alignment:
Q  27 tgtgatccttgagataaacacacttggatcaccatcatggagaaacgttgaagtggatcctcaaatttctttttcggagctcaattatcctacttgtgtg 126  Q
    |||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||| |  ||| ||  |||| |||||||||    
T  1599932 tgtgatccttgagataaacacacttggaacaccatcctggagaaatgttgaagtggatcctcaaatttctttttggatgcttaagaatcccacttgtgtg 1600031  T
Q  127 aatggtgcgcttcattggataagatctgcgcgtaaaaaatggtcaatattgtttttctcttttgaaagtgagaggctgcaattatttccttctccgccac 226  Q
    |||||||| |||||||||||||||| || | || |  ||  |||||||||| |||||| |||||||||||||||| |||| | |||||||||||| ||||    
T  1600032 aatggtgcacttcattggataagatatgagggtgagcaaatgtcaatattggttttctgttttgaaagtgagaggttgcagtcatttccttctcctccac 1600131  T
Q  227 atgtgtttggaaatcatcctaataatggaaatcattgtaacttcaggagaaagattagaatgggagaatcaaagggattactttacatttgtgactggat 326  Q
    ||| ||||||||||||   ||||||||||| |  | |||||      ||  |  |||| |||||||||| ||||||||| ||||||||||||||||  |     
T  1600132 atgagtttggaaatca---taataatggaacttgtggtaac------agccatgttagcatgggagaattaaagggatttctttacatttgtgact--ac 1600220  T
Q  327 cttgttctctgatgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacatcaatacttcgttcaatcc 419  Q
    ||| || ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||   | ||||||| ||||||||    
T  1600221 ctttttatctgatgttccaatgtgggttatgaaggaatatggcattgaagaatcatggactaaggtttacaagtacgatacttcattcaatcc 1600313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 23 - 401
Target Start/End: Complemental strand, 8641858 - 8641480
Alignment:
Q  23 agcgtgtgatccttgagataaacacacttggatcaccatcatggagaaacgttgaagtggatcctcaaatttctttttcggagctcaattatcctacttg 122  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||| |||||   || || ||||| |||||    
T  8641858 agcgtgtgatccttgagataaacacacttggagcaccatcatggagaaatgttgaagtggatcctcagatttctatttcgagtcttaagtatcccacttg 8641759  T
Q  123 tgtgaatggtgcgcttcattggataagatctgcgcgtaaaaaatggtcaatattgtttttctcttttgaaagtgagaggctgcaattatttccttctccg 222  Q
    ||||||| |||  |||||||| || | || || | |  |  || |||||||||| | ||||| ||| |||||||||||  || | ||||||||||||||     
T  8641758 tgtgaatagtgttcttcattgaatcaaatttgagggggagcaaaggtcaatattatgtttctgtttggaaagtgagagattgaagttatttccttctcct 8641659  T
Q  223 ccacatgtgtttggaaatcatcctaataatggaaatcattgtaacttcaggagaaagattagaatgggagaatcaaagggattactttacattt------ 316  Q
    |||||||||||||||||||||  ||||||||||| |||| |||||      ||    ||||| |||||||| | ||||||||| | ||||||||          
T  8641658 ccacatgtgtttggaaatcataataataatggaattcatggtaac------aggcttattagcatgggagagttaaagggatttccttacatttgtgatc 8641565  T
Q  317 gtgactggatcttgttctctgatgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacat 401  Q
    |||||| || ||| |||| ||||||  || ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  8641564 gtgactcgacctttttctttgatgtcacagtgtgggttatgaatgaatatggcattggagaatcatggactaaggcttacaacat 8641480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 23 - 243
Target Start/End: Complemental strand, 8529415 - 8529195
Alignment:
Q  23 agcgtgtgatccttgagataaacacacttggatcaccatcatggagaaacgttgaagtggatcctcaaatttctttttcggagctcaattatcctacttg 122  Q
    |||||||||||||||||||||||||||||||| || |||| |||||||| ||||||||||||||||||||||||||||||   || || ||||| |||||    
T  8529415 agcgtgtgatccttgagataaacacacttggaacaacatcctggagaaatgttgaagtggatcctcaaatttctttttcgagtctaaagtatcccacttg 8529316  T
Q  123 tgtgaatggtgcgcttcattggataagatctgcgcgtaaaaaatggtcaatattgtttttctcttttgaaagtgagaggctgcaattatttccttctccg 222  Q
    |||||||||||| |||||||||||||||| || | || |  || ||||||||||| ||||||  ||||||| ||||||| |||| |  |||||||||||     
T  8529315 tgtgaatggtgcacttcattggataagatttgagggtcagcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcgtttccttctcct 8529216  T
Q  223 ccacatgtgtttggaaatcat 243  Q
    |||||||||||||||||||||    
T  8529215 ccacatgtgtttggaaatcat 8529195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 280 - 575
Target Start/End: Complemental strand, 8529173 - 8528881
Alignment:
Q  280 attagaatgggagaatcaaagggattactttacatttgtgactggatcttgttctctgatgtttcaatgtgggttatgaatgaatatggcattgaagaat 379  Q
    ||||| |||||||||| ||||||||| || |||||||||||   || |||  | ||| |||||||||||||||||||||||||||||||||||| |||||    
T  8529173 attagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattggagaat 8529074  T
Q  380 catggactaaggtttacaacatcaatacttcgttcaatccatctggcgatcgtacttcatggactacaaatttatgtttgcctataaaacactttgaaga 479  Q
    ||||||||||| ||||||||||| |||||||||||||||| | ||  ||||||  | || ||  |     |||| | | ||| |||||||||||||||||    
T  8529073 catggactaagatttacaacatcgatacttcgttcaatcc-tttg--gatcgtgttccacggggttatggtttaagctggccgataaaacactttgaaga 8528977  T
Q  480 aggtgctgccatattgttacatcattcccaaaattgtttgatgtactatgaacctgaaaaatatgaattcaaacttttccgaatacatgggagtcg 575  Q
    ||||||||||||||||| | ||||||||   |||||||| |  ||||| ||||||||||||||||  |||||| |||| ||||| |||||||||||    
T  8528976 aggtgctgccatattgtcatatcattcctccaattgttttacctactacgaacctgaaaaatatgggttcaaagtttttcgaattcatgggagtcg 8528881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 32 - 401
Target Start/End: Complemental strand, 8644687 - 8644321
Alignment:
Q  32 tccttgagataaacacacttggatcaccatcatggagaaacgttgaagtggatcctcaaatttctttt--------tcggag-ctcaattatcctacttg 122  Q
    ||||||||||||||||||||||| |||||||||||||||| | |||||| ||||||||||||||| ||        |  ||| ||  ||||||| ||||     
T  8644687 tccttgagataaacacacttggaacaccatcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgagtcttcattatcccactta 8644588  T
Q  123 tgtgaatggtgcgcttcattggataagatctgcgcgtaaaaaatggtcaatattgtttttctcttttgaaagtgagaggctgcaattatttccttctccg 222  Q
    ||| |||||||||||||||||||| |||| || |  | || || |||| ||||||| ||||| |||||||||||||||| |||||| ||||||||||||     
T  8644587 tgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgttttgaaagtgagaggttgcaatcatttccttctcct 8644488  T
Q  223 ccacatgtgtttggaaatcatcctaataatggaaatcattgtaacttcaggagaaagattagaatgggagaatcaaagggattactttacatttgtgact 322  Q
    |||   ||||||  ||||||    |||||||||  || | |||||     |||    ||| | |||||||||| || |||||||||||||||||| || |    
T  8644487 cca---gtgtttcaaaatcaa---aataatggatttcgtcgtaac-----gagcgt-attcgcatgggagaattaaggggattactttacatttgcga-t 8644401  T
Q  323 ggatcttgttctc-tgatgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacat 401  Q
      || || || || ||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  8644400 acatattcttttcgtgatgttgcaatgtgggttatgaatgaatatgacattggagaatcatggactaaggtttacaacat 8644321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 37 - 243
Target Start/End: Original strand, 2844702 - 2844911
Alignment:
Q  37 gagataaacacacttggatcaccatcatggagaaacgttgaagtggatcctcaaatttctttttcggagctcaattatcctacttgtgtgaatggtgcgc 136  Q
    |||||| |||| |||||| |||||||||||||||| |||||||||||||||||||||||||||| | ||||     |||| || ||||||||||| || |    
T  2844702 gagatacacacgcttggaacaccatcatggagaaaggttgaagtggatcctcaaatttcttttttgaagcttttgaatccaacatgtgtgaatggcgcac 2844801  T
Q  137 ttcattggataagatctg---cgcgtaaaaaatggtcaatattgtttttctcttttgaaagtgagaggctgcaattatttccttctccgccacatgtgtt 233  Q
    |||||||||| | || ||   || |  || ||  ||||||||||| ||||  |||||||||||||||| |||| |  ||||||||||| |||||||||||    
T  2844802 ttcattggattatatttgaaacggggcaacaaaagtcaatattgtgtttcaattttgaaagtgagaggttgcagtcgtttccttctcctccacatgtgtt 2844901  T
Q  234 tggaaatcat 243  Q
    ||||||||||    
T  2844902 tggaaatcat 2844911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 336 - 409
Target Start/End: Complemental strand, 8637041 - 8636968
Alignment:
Q  336 tgatgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacatcaatactt 409  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  8637041 tgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaacatcgatactt 8636968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 37 - 243
Target Start/End: Original strand, 2874139 - 2874348
Alignment:
Q  37 gagataaacacacttggatcaccatcatggagaaacgttgaagtggatcctcaaatttctttttcggagctcaattatcctacttgtgtgaatggtgcgc 136  Q
    |||||| |||| || ||| |||||||||||||||| |||||||||||||||||||||||||||| | ||||     |||| || ||||||||||| || |    
T  2874139 gagatacacacgctcggaacaccatcatggagaaatgttgaagtggatcctcaaatttcttttttgaagcttttgaatccaacatgtgtgaatggcgcac 2874238  T
Q  137 ttcattggataagatct---gcgcgtaaaaaatggtcaatattgtttttctcttttgaaagtgagaggctgcaattatttccttctccgccacatgtgtt 233  Q
    |||||||||| | || |   ||  |  || ||  ||||||||||| ||||  |||||||||||||||| |||| |  ||||||||||| |||||||||||    
T  2874239 ttcattggattatatttgaagcttggcaacaaaagtcaatattgtgtttcaattttgaaagtgagaggttgcagtcgtttccttctcctccacatgtgtt 2874338  T
Q  234 tggaaatcat 243  Q
    ||||||||||    
T  2874339 tggaaatcat 2874348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 37 - 243
Target Start/End: Original strand, 2856529 - 2856738
Alignment:
Q  37 gagataaacacacttggatcaccatcatggagaaacgttgaagtggatcctcaaatttctttttcggagctcaattatcctacttgtgtgaatggtgcgc 136  Q
    |||||| |||| || ||| || ||||||||||||| |||||||||||||||||||||||||||| | ||||     |||| || ||||||||||| || |    
T  2856529 gagatacacacgctcggaacatcatcatggagaaatgttgaagtggatcctcaaatttcttttttgaagcttttgaatccaacatgtgtgaatggcgcac 2856628  T
Q  137 ttcattggataagatctg---cgcgtaaaaaatggtcaatattgtttttctcttttgaaagtgagaggctgcaattatttccttctccgccacatgtgtt 233  Q
    |||||||||| | || ||   |  |  || ||  ||||||||||| ||||  |||||||||||||||| |||| |  ||||||||||| |||||||||||    
T  2856629 ttcattggattatatttgaagcttggcaacaaaagtcaatattgtgtttcaattttgaaagtgagaggttgcagtcgtttccttctcctccacatgtgtt 2856728  T
Q  234 tggaaatcat 243  Q
    ||||||||||    
T  2856729 tggaaatcat 2856738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 23 - 151
Target Start/End: Complemental strand, 9003939 - 9003813
Alignment:
Q  23 agcgtgtgatccttgagataaacacacttggatcaccatcatggagaaacgttgaagtggatcctcaaatttctttttcggag-ctcaattatcctactt 121  Q
    |||||| |||||||||||||  |||||| ||| |||||||||||||||| |||||||||||||||||| | ||| ||| |||| || |||||||| ||||    
T  9003939 agcgtgcgatccttgagata--cacactgggaacaccatcatggagaaatgttgaagtggatcctcaactgtctattt-ggagtcttaattatccgactt 9003843  T
Q  122 gtgtgaatggtgcgcttcattggataagat 151  Q
    |||||||||| || ||||||||||| ||||    
T  9003842 gtgtgaatggcgcacttcattggatcagat 9003813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 336 - 401
Target Start/End: Complemental strand, 8677988 - 8677923
Alignment:
Q  336 tgatgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacat 401  Q
    ||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  8677988 tgatgttgcaatgtgggatatgaatgaatatggcattggagaatcatggactaaggtttacaacat 8677923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 338 - 411
Target Start/End: Original strand, 2856824 - 2856897
Alignment:
Q  338 atgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacatcaatacttcg 411  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||  ||||||||    
T  2856824 atgttacaatgtgggttatgaatgaatatggcattggagaatcatggactattgtttacaacattgatacttcg 2856897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 338 - 411
Target Start/End: Original strand, 2874434 - 2874507
Alignment:
Q  338 atgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacatcaatacttcg 411  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||  ||||||||    
T  2874434 atgttacaatgtgggttatgaatgaatatggcattggagaatcatggactattgtttacaacattgatacttcg 2874507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 344 - 401
Target Start/End: Original strand, 2904938 - 2904995
Alignment:
Q  344 caatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacat 401  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  2904938 caatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacat 2904995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 338 - 411
Target Start/End: Original strand, 2844997 - 2845070
Alignment:
Q  338 atgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacatcaatacttcg 411  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||  ||||||| |||  ||||||||    
T  2844997 atgttacaatgtgggttatgaatgaatatggcattggagaatcatggactattgtttacagcattgatacttcg 2845070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 29 - 221
Target Start/End: Complemental strand, 8678293 - 8678091
Alignment:
Q  29 tgatccttgagataaacacacttggat-caccatcatggagaaacgttgaagtggatcctcaaatttctttt---tcgga------gctcaattatccta 118  Q
    |||||||||||||||||||| |||||  |||||||||||||||| | |||||||||||||||||||||| ||   || ||      ||||  |||||| |    
T  8678293 tgatccttgagataaacacaattggaaacaccatcatggagaaatgctgaagtggatcctcaaatttctattggatcagatttgaggctccgttatccca 8678194  T
Q  119 cttgtgtgaatggtgcgcttcattggataagatctgcgcgtaaaaaatggtcaatattgtttttctcttttgaaagtgagaggctgcaattatttccttc 218  Q
    ||||| | ||||||||||||||||||||  ||| || | || || ||  ||| ||||||| ||||| ||| |||| ||||| | |||||| |||||||||    
T  8678193 cttgtattaatggtgcgcttcattggatcggatttgagggtcaagaaatgtctatattgtgtttctgtttagaaactgagaagttgcaatcatttccttc 8678094  T
Q  219 tcc 221  Q
    |||    
T  8678093 tcc 8678091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 2904779 - 2904848
Alignment:
Q  168 gtcaatattgtttttctcttttgaaagtgagaggctgcaattatttccttctccgccacatgtgtttgga 237  Q
    ||||||||||| ||||  |||||||||||||||| |||||| |||||||||||| |||||| ||||||||    
T  2904779 gtcaatattgtgtttcagttttgaaagtgagaggatgcaatcatttccttctcctccacatatgtttgga 2904848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 368
Target Start/End: Original strand, 8547992 - 8548073
Alignment:
Q  287 tgggagaatcaaagggattactttacatttgtgactggatcttgttctctgatgtttcaatgtgggttatgaatgaatatgg 368  Q
    ||||||||| ||||||||  ||||||||||||||||||| ||   ||||| ||||| |||||||||||||||| ||||||||    
T  8547992 tgggagaattaaagggatgtctttacatttgtgactggaactatctctcttatgttacaatgtgggttatgaacgaatatgg 8548073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 221
Target Start/End: Complemental strand, 8637342 - 8637144
Alignment:
Q  32 tccttgagataaacacacttggatcaccatcatggagaaacgttgaagtggatcctcaaatttctttt---tcgga------gctcaattatcctacttg 122  Q
    ||||||||||| | ||||||||| |||||||||||||||| | |||||||||||| ||||||||| ||   ||  |      |||   |||||| |||||    
T  8637342 tccttgagatatatacacttggaacaccatcatggagaaatgctgaagtggatccccaaatttctattggatcaaatatatggcttcgttatcccacttg 8637243  T
Q  123 tgtgaatggtgcgcttcattggataagatctgcgcgtaaaaaatggtcaatattgtttttctcttttgaaagtgagaggctgcaattatttccttctcc 221  Q
    |||||||||| || |||||||||| |||| |  | || || || |||| ||||||| ||||| ||| |||| ||||||| |||||| ||||||||||||    
T  8637242 tgtgaatggtacgattcattggatcagatttaagggtcaagaaaggtctatattgtgtttctgtttagaaaatgagaggttgcaatcatttccttctcc 8637144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 450 - 563
Target Start/End: Complemental strand, 8677865 - 8677752
Alignment:
Q  450 tttatgtttgcctataaaacactttgaagaaggtgctgccatattgttacatcattcccaaaattgtttgatgtactatgaacctgaaaaatatgaattc 549  Q
    |||||||| |||  |||||||||||||||| |||||||||||||||||| ||||||||   |||||| | || ||||||||||| || ||| |||  |||    
T  8677865 tttatgttggccggtaaaacactttgaagagggtgctgccatattgttatatcattcctgcaattgtcttatctactatgaacccgagaaacatggtttc 8677766  T
Q  550 aaacttttccgaat 563  Q
    ||| |||| |||||    
T  8677765 aaagtttttcgaat 8677752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 2904642 - 2904708
Alignment:
Q  34 cttgagataaacacacttggatcaccatcatggagaaacgttgaagtggatcctcaaatttcttttt 100  Q
    ||||||||| |||| || ||| || |||||||||||||  |||||||||||||||||||||||||||    
T  2904642 cttgagatacacacgctcggaacaacatcatggagaaatcttgaagtggatcctcaaatttcttttt 2904708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 146
Target Start/End: Original strand, 8547750 - 8547857
Alignment:
Q  35 ttgagataaacacacttggatcaccatcatggagaaacgttgaagtggatcctcaaatttctttttcggagctcaattatcctacttgtgtgaatggtgc 134  Q
    |||||||| ||||||| ||| ||||| ||||||||||     ||||||||||||||||||||| |||  | || |  ||||| |||||||||||| ||||    
T  8547750 ttgagatacacacactcggaacaccaacatggagaaat----aagtggatcctcaaatttcttcttcttatcttatgtatcccacttgtgtgaatcgtgc 8547845  T
Q  135 gcttcattggat 146  Q
     |||||||||||    
T  8547846 acttcattggat 8547857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 464 - 533
Target Start/End: Complemental strand, 8636913 - 8636844
Alignment:
Q  464 taaaacactttgaagaaggtgctgccatattgttacatcattcccaaaattgtttgatgtactatgaacc 533  Q
    |||||||||||||||| || ||||||||||||||| ||||||||   |||||| | || |||||||||||    
T  8636913 taaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacc 8636844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 506
Target Start/End: Original strand, 8548141 - 8548193
Alignment:
Q  454 tgtttgcctataaaacactttgaagaaggtgctgccatattgttacatcattc 506  Q
    ||||||||  |||||||||||||||| ||||||||| |||||||| |||||||    
T  8548141 tgtttgccggtaaaacactttgaagagggtgctgccgtattgttatatcattc 8548193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 498
Target Start/End: Original strand, 1600338 - 1600377
Alignment:
Q  459 gcctataaaacactttgaagaaggtgctgccatattgtta 498  Q
    ||| ||| ||||||||||||||||||||||||||||||||    
T  1600338 gccgatacaacactttgaagaaggtgctgccatattgtta 1600377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 533
Target Start/End: Complemental strand, 8644272 - 8644189
Alignment:
Q  450 tttatgtttgcctataaaacactttgaagaaggtgctgccatattgttacatcattcccaaaattgtttgatgtactatgaacc 533  Q
    |||||||| |||  ||||| |||||||||| || ||||||||||||||| ||||||||   |||||| | || |||||||||||    
T  8644272 tttatgttggccggtaaaaaactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacc 8644189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 3380924 - 3380858
Alignment:
Q  34 cttgagataaacacacttggatcaccatcatggagaaacgttgaagtggatcctcaaatttcttttt 100  Q
    ||||||||| ||||  | ||| || |||||| ||||||  |||||||||||||||||||||||||||    
T  3380924 cttgagatacacacgttcggaacaacatcatagagaaatcttgaagtggatcctcaaatttcttttt 3380858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 162; Significance: 4e-86; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 23 - 575
Target Start/End: Complemental strand, 9443576 - 9443042
Alignment:
Q  23 agcgtgtgatccttgagataaacacacttggatcaccatcatggagaaacgttgaagtggatcctcaaatttctttttcggagctcaattatcctacttg 122  Q
    |||||||||||||||||||||||||||||||| || |||| |||||||| ||||||||||||||||||||||||||||||   || || ||||| |||||    
T  9443576 agcgtgtgatccttgagataaacacacttggaacaacatcctggagaaatgttgaagtggatcctcaaatttctttttcgagtctaaagtatcccacttg 9443477  T
Q  123 tgtgaatggtgcgcttcattggataagatctgcgcgtaaaaaatggtcaatattgtttttctcttttgaaagtgagaggctgcaattatttccttctccg 222  Q
    |||||||||||| |||||||||||||||| || |  | |  || ||||||||||| ||||||  ||||||||||||||| |||| | ||||||||||||     
T  9443476 tgtgaatggtgcacttcattggataagatttgaggatgagcaaaggtcaatattggttttctgctttgaaagtgagaggttgcagtcatttccttctcct 9443377  T
Q  223 ccacatgtgtttggaaatcatcctaataatggaaatcattgtaacttcaggagaaagattagaatgggagaatcaaagggattactttacatttgtgact 322  Q
    |||||||||||||||||||      ||||||    | ||||||      | ||    ||||| |||||||||| ||||||||| || |||||||||||      
T  9443376 ccacatgtgtttggaaatc------ataatgt---ttattgta------gtaggcctattagcatgggagaattaaagggatttctatacatttgtgatc 9443292  T
Q  323 ggatcttgttctctgatgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacatcaatacttcgttcaatccatc 422  Q
     || |||  | ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||| |     
T  9443291 cgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacatcgatacttcgttcaatcc-tt 9443193  T
Q  423 tggcgatcgtacttcatggactacaaatttatgtttgcctataaaacactttgaagaaggtgctgccatattgttacatcattcccaaaattgtttgatg 522  Q
    ||  ||||||  | || ||  |     |||| | | ||| |||||||||||||||||||||||||||||||||| | ||||||||   |||||||| |      
T  9443192 tg--gatcgtgttccacggggttatggtttaagctggccgataaaacactttgaagaaggtgctgccatattgtcatatcattccttcaattgttttacc 9443095  T
Q  523 tactatgaacctgaaaaatatgaattcaaacttttccgaatacatgggagtcg 575  Q
    ||||| ||||||||||||||||  |||||| |||| ||||| |||||||||||    
T  9443094 tactacgaacctgaaaaatatgggttcaaagtttttcgaattcatgggagtcg 9443042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 7e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 334 - 419
Target Start/End: Original strand, 26324200 - 26324285
Alignment:
Q  334 tctgatgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacatcaatacttcgttcaatcc 419  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||| || |||||||||||||    
T  26324200 tctgatgtttcaatgtgggttatgaatgaatatggcactggagaatcatggactaagatttacaacatcgatgcttcgttcaatcc 26324285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 23 - 243
Target Start/End: Complemental strand, 5131245 - 5131025
Alignment:
Q  23 agcgtgtgatccttgagataaacacacttggatcaccatcatggagaaacgttgaagtggatcctcaaatttctttttcggagctcaattatcctacttg 122  Q
    |||||||||||||||||||| |||| |||||| ||   ||||||||||| ||||||||||||| ||| |||||| |||||  |||  | | |||||||||    
T  5131245 agcgtgtgatccttgagatacacactcttggaacattgtcatggagaaatgttgaagtggatcttcagatttctatttcgaggcttgagtgtcctacttg 5131146  T
Q  123 tgtgaatggtgcgcttcattggataagatctgcgcgtaaaaaatggtcaatattgtttttctcttttgaaagtgagaggctgcaattatttccttctccg 222  Q
    ||||||||   | ||||||||||| | || ||  | || |||| ||||| | |||| ||||  |||||||||||||||  |||||| ||| ||||||||     
T  5131145 tgtgaatgacacacttcattggatcatatatgatcttagaaaaaggtcattgttgtgtttcagttttgaaagtgagagattgcaatcattcccttctcct 5131046  T
Q  223 ccacatgtgtttggaaatcat 243  Q
    ||||| ||||||| |||||||    
T  5131045 ccacacgtgtttgaaaatcat 5131025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 464 - 507
Target Start/End: Complemental strand, 5130853 - 5130810
Alignment:
Q  464 taaaacactttgaagaaggtgctgccatattgttacatcattcc 507  Q
    |||||||||||||||| ||||||||||||||| || ||||||||    
T  5130853 taaaacactttgaagagggtgctgccatattgctatatcattcc 5130810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 26324135 - 26324183
Alignment:
Q  23 agcgtgtgatccttgagataaacacacttggatcaccatcatggagaaa 71  Q
    ||||||||||||||| ||| |||||||||||| |||| || ||||||||    
T  26324135 agcgtgtgatccttgggatgaacacacttggaacaccgtcctggagaaa 26324183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 280 - 419
Target Start/End: Complemental strand, 4877 - 4738
Alignment:
Q  280 attagaatgggagaatcaaagggattactttacatttgtgactggatcttgttctctgatgtttcaatgtgggttatgaatgaatatggcattgaagaat 379  Q
    ||||| |||||||||| ||||||||| ||||||||||||||||  | ||  ||     ||||| ||||||||||||||||||||||||||||||  ||||    
T  4877 attagcatgggagaattaaagggatttctttacatttgtgactcaaactccttaaaatatgttacaatgtgggttatgaatgaatatggcattggtgaat 4778  T
Q  380 catggactaaggtttacaacatcaatacttcgttcaatcc 419  Q
    ||||||||||||||||| |||| ||||||| || ||||||    
T  4777 catggactaaggtttaccacattaatactttgtacaatcc 4738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 464 - 506
Target Start/End: Complemental strand, 4705 - 4663
Alignment:
Q  464 taaaacactttgaagaaggtgctgccatattgttacatcattc 506  Q
    |||||||||||||||| ||||||||  ||||||||||||||||    
T  4705 taaaacactttgaagagggtgctgctgtattgttacatcattc 4663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 280 - 401
Target Start/End: Complemental strand, 16716576 - 16716455
Alignment:
Q  280 attagaatgggagaatcaaagggattactttacatttgtgactggatcttgttctctgatgtttcaatgtgggttatgaatgaatatggcattgaagaat 379  Q
    ||||| |||||||||| ||||||||| || ||||||| |||||  | ||| |||    ||||| |||||||||||||||||||||||||||||| |||||    
T  16716576 attagcatgggagaattaaagggatttctatacatttctgactcaaacttcttcgaatatgttacaatgtgggttatgaatgaatatggcattggagaat 16716477  T
Q  380 catggactaaggtttacaacat 401  Q
    ||||||||||||||||| ||||    
T  16716476 catggactaaggtttaccacat 16716455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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