View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18315_low_14 (Length: 593)
Name: NF18315_low_14
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 136; Significance: 1e-70; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 25747420 - 25747617
Alignment:
| Q |
19 |
accgatcaccctgtaaaggaaaaatat-ttatataaatgagaatgcaattaataatgcatgcatgcat----atgaagaaataaaaagagaagaatcata |
113 |
Q |
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| T |
25747420 |
accgatcaccctgtaaaggaaaaaaaaattatataaatgagaatgcaataattaatgcatgcatgcatgcatatgaagaaataaaaagagaagaatcat- |
25747518 |
T |
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| Q |
114 |
ttcataataatggaatagtagtattactgggaaatcatagagggtgggagggctgagaaggtgttttggagagtaccaatcacgatcaagattccacatt |
213 |
Q |
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| T |
25747519 |
-----aataatggaatagtagtattactgggaaatcataaagggtgggagggctgagaaggtgttttggagagtaccaatcacgatcaagattccacatt |
25747613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 25739015 - 25739213
Alignment:
| Q |
19 |
accgatcaccctgtaaaggaaaaatat--ttatataaatgagaatgcaattaataatgcatgcatgcat----atgaagaaataaaaagagaagaatcat |
112 |
Q |
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| T |
25739015 |
accgatcaccctgtaaaggaaaaaaaaaattatataaatgagaatgcaataattaatgcatgcatgcatgcatatgaagaaataaaaagagaagaatcat |
25739114 |
T |
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| Q |
113 |
attcataataatggaatagtagtattactgggaaatcatagagggtgggagggctgagaaggtgttttggagagtaccaatcacgatcaagattccacat |
212 |
Q |
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| T |
25739115 |
------aataatggaatagtagtattactgggaaatcataaagggtgggagggatgaggaggtgttttggagagtaccaatcacgatcaagattccacat |
25739208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 271 - 398
Target Start/End: Original strand, 25747680 - 25747807
Alignment:
| Q |
271 |
gaatgagtttgggaacgttgtttggtttgtttacccgccaactacatataaagtggcaacggtttgtgttttgaaccgttactatattttgcactcgtat |
370 |
Q |
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| T |
25747680 |
gaatgggtttgagaacgttgtttggtttgtttacccgccaactacatataaagtggcaacggtttgtgttttgaaccgttactatattttgcactcgtat |
25747779 |
T |
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| Q |
371 |
caatcaaatctattatgaatgaatttgg |
398 |
Q |
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| T |
25747780 |
aaatcaaatctattatgaataaatttgg |
25747807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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