View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18315_low_15 (Length: 562)
Name: NF18315_low_15
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_low_15 |
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| [»] scaffold0011 (2 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 158 - 562
Target Start/End: Complemental strand, 243506 - 243099
Alignment:
| Q |
158 |
gtagaaacggcagtctctgcaatcattatataatttcgattgctaaactcccaagaacaccctaagtgggccaaatcgtgcacggaagacataaaagtct |
257 |
Q |
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| T |
243506 |
gtagaaacggcagtctctacaatcattata--atttcgattgttaaactcccaagaacgccctaagtggacaaaatcgtgcacggaagacataaaagtct |
243409 |
T |
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| Q |
258 |
tnnnnnnntat--tttcaaaggacttagcag---gaaaaccagcacacactagagtacgaaagtagaaaattgcagattgaaattcacgccccagtatat |
352 |
Q |
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| T |
243408 |
taaaaaaatatattttcaaaggacttagtagaaggaaaaccagcacacactagagtacgaaagtagaaaattgcatattgaaattcacgctccagtatat |
243309 |
T |
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| Q |
353 |
aatgtgtcaatgcaacattttaccatttgagctaaacacgcaacatgtttttcgaatgttgaaagtgcttgcggtcataattagggttgtaattgtaaag |
452 |
Q |
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| T |
243308 |
aatgtgtcaatgcaacattttaccatttgagctaaacacgcaacatgtttttcgattgttgaaagtgcttgcggtcacaattagagttgtaattgtaaag |
243209 |
T |
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| Q |
453 |
ccacaacttaaactacaactagagaaactaaaaaataaatcagctaacaagaatatgaagatagcaaccacgaattatgctcatcaatcatcatccataa |
552 |
Q |
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| T |
243208 |
ccacaacttaaactacaactagagaaactaaaaaataaagtaactaacaagaatatgaagatagcaaccacgaattatgctcatcaatcatcatccataa |
243109 |
T |
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| Q |
553 |
gattgtttga |
562 |
Q |
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| T |
243108 |
gattgtttga |
243099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 243591 - 243441
Alignment:
| Q |
1 |
agtacagcttgtcaaaaaggtactcatgaaatattatataaaattgcaaacaaatgtgttcgacgaaacttatttcaatcgtgaagtagaaacggcaatc |
100 |
Q |
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|||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||| |||||||||| ||||||||||||||||| || |
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| T |
243591 |
agtacaacttgtcaaaaaggtactcatcaaatattatataaaattgcaaacagatgtgtttgacgaaatttatttcaattgtgaagtagaaacggcagtc |
243492 |
T |
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| Q |
101 |
tctacaatcattatataatttcgtttgttaaactcccaagaacggtctaagtg |
153 |
Q |
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| T |
243491 |
tctacaatcat--tataatttcgattgttaaactcccaagaacgccctaagtg |
243441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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