View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18315_low_17 (Length: 553)
Name: NF18315_low_17
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 535
Target Start/End: Original strand, 54323803 - 54324337
Alignment:
| Q |
1 |
cttatacattaggccaactgccttatattcaatcacttgatatatcttcaaaccaattgaatggaacaataccagagtcactccagttatgttcctatct |
100 |
Q |
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| T |
54323803 |
cttatacattaggccaactgccttatattcaatcacttgatatatcttcaaaccaattgaatggaacaataccagagtcactccagttatgttcctatct |
54323902 |
T |
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| Q |
101 |
caaagcacttaacttctctttcaacaaattctcaggaaatgtcccaaacaaaggagcgttttcatctttaaccatagattctttcctaggaaacaataat |
200 |
Q |
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| T |
54323903 |
caaagcacttaacttctctttcaacaaattctcaggaaatgtctcaaacaaaggagcgttttcatctttaaccatagattctttcctaggaaacaataat |
54324002 |
T |
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| Q |
201 |
ctatgtggtccatttaaaggcatgcaacaatgtcataggnnnnnnngttatcatttggtgtttttgctagttcctgtgttactatttggcacacctgtga |
300 |
Q |
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| T |
54324003 |
ctatgtggtccatttaaaggcatgcaacaatgtcataggaaaaaaagttatcatttggtgtttttgctagttcctgtgttactatttggcacacctgtga |
54324102 |
T |
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| Q |
301 |
tatgcatgtgtaggaactccataataatcaagtcaaaagtgaaaaagaaacttcaagccgttagtaacagatgtgacttggaggatgaagaagtggaaac |
400 |
Q |
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| T |
54324103 |
tatgcatgtgtagggactccataataatcaagtcaaaagtgaagaagaaacttcaagccgttagtaacagatgtgacttggaggatgaagaagtggaaac |
54324202 |
T |
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| Q |
401 |
aaaagagatcaagcatccaagaatttcatatagacaacttagagaagccactggagggttcaatgcttcaagccttatcggttcaggtctgtttggacga |
500 |
Q |
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| T |
54324203 |
aaaagagatcaagcatccaagaatttcatatagacaacttagagaagccactggagggttcaatgcttcaagccttatcggttcaggtcagtttggacga |
54324302 |
T |
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| Q |
501 |
gtttacaaaggtgtcttcctagataatacaagagt |
535 |
Q |
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| T |
54324303 |
gtttacaaaggtgtcctcctagataatacaagagt |
54324337 |
T |
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